RLG00000003633

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017557
Physical Location & Seq
Forward (+)
50984953 .. 50987876
2924 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003633

Sequence Viewer

Length: 573 bp
ATGGAGAACAGAGTCCGGCCCAAAAAGCCTGTAGAGAGCGTCCTTCGTTCTATTCCTTCCCGGCGCAGAGAGCCAGGTATCTTATCAGAAAGCCTAGAGCGGTTCTACCATGGAACTAAACCTAAGGTGCCCCGAGAGCCTCAGCAGCCCCAACCAAAAATAAACCAGAAGACGGTTTCTGATGATTCTGAACCATTCAAAGGGTCAGGTGCTAAAGGATGGCCTCTCCAGCCTCCTCTATACATGCCCGTACCCCCTCCTTCACAGTCTACCAATGCAGACTTGGACGCAATCAGATCTGTTCTCCAACAGAGTGAGAAAGTCGTGGAGCGTTTGAAGAAGCAGGAGGAGAACATGGCACAGGAGGTGACACAAAGAGCAAAGGAGCTTCGTGACAAGGAGTTCAAGCTCCCATACCAGAAGCCTATGCCTTGCTTAGCTGAGAAAGATGCTTGTGTGGATTGCTACAAGGAGCATGGGAAGGAGGATCCTCTCAAGTGTGCTGGTCTTGTTAACAGTTATGCAGATTGTGCTCGCAAAGTTAGGCAGCAGGTCAGTTCGGGAAACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.59

Weight (kDa)

9.33

Isoelectric Point (pI)

70.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017557)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12340
fragaria_vesca FvH4_5g00490
malus_domestica MD04G1080500.v1.1
prunus_persica Prupe.4G260700_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0202021
rosa_laevigata RLG00000003633
rosa_roxburghii Rroxscaffold_3G00254940
rosa_samantha Rh7AG194600 Rh7BG196100 Rh7CG205900 Rh7DG201300
rosa_wichuraiana Rw7G017050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 541
AccB1I GGYRCC 1 cut(s) 127
AccBSI CCGCTC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 269
AciI CCGC 1 cut(s) 100
AclWI GGATC 2 cut(s) 482, 495
AfaI GTAC 1 cut(s) 252
AfiI CCNNNNNNNGG 2 cut(s) 172, 200
AgsI TTSAA 3 cut(s) 199, 337, 406
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 3 cut(s) 388, 409, 440
AluI AGCT 3 cut(s) 388, 409, 440
Alw21I GWGCWC 1 cut(s) 535
AlwI GGATC 2 cut(s) 482, 495
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 2 cut(s) 17, 221
ApeKI GCWGC 2 cut(s) 145, 547
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 379
AvaI CYCGRG 1 cut(s) 132
AxyI CCTNAGG 1 cut(s) 123
BaeGI GKGCMC 1 cut(s) 132
BamHI GGATCC 1 cut(s) 487
BanI GGYRCC 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 176
Bbv12I GWGCWC 1 cut(s) 535
BbvCI CCTCAGC 1 cut(s) 141
BbvI GCAGC 2 cut(s) 157, 559
BccI CCATC 1 cut(s) 213
BciT130I CCWGG 1 cut(s) 75
BcnI CCSGG 1 cut(s) 61
BfaI CTAG 1 cut(s) 95
BfmI CTRYAG 1 cut(s) 30
BfuAI ACCTGC 1 cut(s) 541
BglII AGATCT 1 cut(s) 296
BisI GCNGC 2 cut(s) 146, 548
BlpI GCTNAGC 1 cut(s) 436
BlsI GCNGC 2 cut(s) 147, 549
Bme1390I CCNGG 2 cut(s) 61, 75
BmeT110I CYCGRG 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 2 cut(s) 129, 489
BmrFI CCNGG 2 cut(s) 61, 75
BmsI GCATC 1 cut(s) 439
BpiI GAAGAC 1 cut(s) 176
BpmI CTGGAG 1 cut(s) 212
Bpu10I CCTNAGC 1 cut(s) 141
Bpu1102I GCTNAGC 1 cut(s) 436
BpuEI CTTGAG 1 cut(s) 479
BpuMI CCSGG 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 200
Bse21I CCTNAGG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 224
BseLI CCNNNNNNNGG 2 cut(s) 172, 200
BseMII CTCAG 2 cut(s) 155, 432
BseRI GAGGAG 2 cut(s) 225, 362
BseSI GKGCMC 1 cut(s) 132
BseXI GCAGC 2 cut(s) 157, 559
BshFI GGCC 2 cut(s) 19, 223
BshNI GGYRCC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 535
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 2 cut(s) 16, 61
BslI CCNNNNNNNGG 2 cut(s) 172, 200
BsnI GGCC 2 cut(s) 19, 223
BsoBI CYCGRG 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 132, 535
Bsp143I GATC 2 cut(s) 296, 487
Bsp1720I GCTNAGC 1 cut(s) 436
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 1 cut(s) 100
BspANI GGCC 2 cut(s) 19, 223
BspCNI CTCAG 2 cut(s) 154, 433
BspLI GGNNCC 2 cut(s) 129, 489
BspMI ACCTGC 1 cut(s) 541
BspPI GGATC 2 cut(s) 482, 495
BspT107I GGYRCC 1 cut(s) 127
BsrBI CCGCTC 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 2 cut(s) 296, 487
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 3 cut(s) 175, 267, 518
BstAPI GCANNNNNTGC 1 cut(s) 530
BstC8I GCNNGC 1 cut(s) 535
BstDEI CTNAG 4 cut(s) 123, 141, 436, 441
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 224
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 2 cut(s) 299, 490
BstMBI GATC 2 cut(s) 296, 487
BstMWI GCNNNNNNNGC 6 cut(s) 25, 70, 136, 145, 229, 530
BstNI CCWGG 1 cut(s) 75
BstNSI RCATGY 1 cut(s) 247
BstSCI CCNGG 2 cut(s) 59, 73
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 157, 559
BstV2I GAAGAC 1 cut(s) 176
BstX2I RGATCY 2 cut(s) 296, 487
BstYI RGATCY 2 cut(s) 296, 487
Bsu36I CCTNAGG 1 cut(s) 123
BsuRI GGCC 2 cut(s) 19, 223
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 224
BveI ACCTGC 1 cut(s) 541
Cac8I GCNNGC 1 cut(s) 535
CfoI GCGC 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 18
CseI GACGC 2 cut(s) 28, 296
Csp6I GTAC 1 cut(s) 251
CviAII CATG 4 cut(s) 110, 244, 355, 476
CviQI GTAC 1 cut(s) 251
DdeI CTNAG 4 cut(s) 123, 141, 436, 441
DpnI GATC 2 cut(s) 298, 489
DpnII GATC 2 cut(s) 296, 487
Eco130I CCWWGG 1 cut(s) 109
Eco81I CCTNAGG 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 4 cut(s) 113, 247, 358, 479
FaiI YATR 8 cut(s) 111, 241, 245, 356, 415, 428, 477, 522
FatI CATG 4 cut(s) 109, 243, 354, 475
FblI GTMKAC 1 cut(s) 269
Fnu4HI GCNGC 2 cut(s) 146, 548
FokI GGATG 1 cut(s) 231
Fsp4HI GCNGC 2 cut(s) 146, 548
FspBI CTAG 1 cut(s) 95
GlaI GCGC 1 cut(s) 65
GluI GCNGC 2 cut(s) 146, 548
GsuI CTGGAG 1 cut(s) 212
HaeIII GGCC 2 cut(s) 19, 223
HapII CCGG 2 cut(s) 16, 61
HgaI GACGC 2 cut(s) 28, 296
HhaI GCGC 1 cut(s) 66
Hin1II CATG 4 cut(s) 113, 247, 358, 479
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HinfI GANTC 2 cut(s) 12, 185
HpaI GTTAAC 1 cut(s) 514
HpaII CCGG 2 cut(s) 16, 61
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 2 cut(s) 270, 514
Hpy188I TCNGA 4 cut(s) 88, 181, 190, 296
Hpy188III TCNNGA 2 cut(s) 392, 561
Hpy8I GTNNAC 2 cut(s) 270, 514
HpyAV CCTTC 4 cut(s) 53, 66, 270, 475
HpyCH4III ACNGT 3 cut(s) 175, 267, 518
HpyCH4V TGCA 2 cut(s) 278, 524
HpyF10VI GCNNNNNNNGC 6 cut(s) 25, 70, 136, 145, 229, 530
HpyF3I CTNAG 4 cut(s) 123, 141, 436, 441
Hsp92II CATG 4 cut(s) 113, 247, 358, 479
HspAI GCGC 1 cut(s) 64
KspAI GTTAAC 1 cut(s) 514
Kzo9I GATC 2 cut(s) 296, 487
LmnI GCTCC 4 cut(s) 328, 385, 414, 472
Lsp1109I GCAGC 2 cut(s) 157, 559
LweI GCATC 1 cut(s) 439
MaeI CTAG 1 cut(s) 95
MaeIII GTNAC 2 cut(s) 367, 392
MalI GATC 2 cut(s) 298, 489
MbiI CCGCTC 1 cut(s) 100
MboI GATC 2 cut(s) 296, 487
MboII GAAGA 2 cut(s) 181, 349
MflI RGATCY 2 cut(s) 296, 487
MhlI GDGCHC 2 cut(s) 132, 535
MlyI GAGTC 1 cut(s) 21
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 9 cut(s) 150, 234, 243, 246, 267, 340, 358, 478, 501
MseI TTAA 1 cut(s) 513
MspI CCGG 2 cut(s) 16, 61
MspR9I CCNGG 2 cut(s) 61, 75
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 6 cut(s) 25, 70, 136, 145, 229, 530
NciI CCSGG 1 cut(s) 61
NcoI CCATGG 1 cut(s) 109
NdeII GATC 2 cut(s) 296, 487
NlaIII CATG 4 cut(s) 113, 247, 358, 479
NlaIV GGNNCC 2 cut(s) 129, 489
NmuCI GTSAC 2 cut(s) 367, 392
NspI RCATGY 1 cut(s) 247
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 2 cut(s) 147, 549
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 2 cut(s) 129, 489
PspPI GGNCC 1 cut(s) 18
PsuI RGATCY 2 cut(s) 296, 487
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 513
SatI GCNGC 2 cut(s) 146, 548
Sau3AI GATC 2 cut(s) 296, 487
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 1 cut(s) 21
ScrFI CCNGG 2 cut(s) 61, 75
SduI GDGCHC 2 cut(s) 132, 535
SetI ASST 9 cut(s) 79, 124, 129, 211, 369, 390, 411, 442, 555
SfaNI GCATC 1 cut(s) 439
SfcI CTRYAG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
SsiI CCGC 1 cut(s) 100
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 59, 73
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 3 cut(s) 175, 267, 518
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 1 cut(s) 513
Tru9I TTAA 1 cut(s) 513
TseFI GTSAC 2 cut(s) 367, 392
TseI GCWGC 2 cut(s) 145, 547
Tsp45I GTSAC 2 cut(s) 367, 392
XceI RCATGY 1 cut(s) 247
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XmiI GTMKAC 1 cut(s) 269
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.