AT4G13930

Serine hydroxymethyltransferase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
8047692 .. 8050157
2466 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13930.1

Sequence Viewer

Length: 1416 bp
ATGGAACCAGTCTCTTCATGGGGTAACACCTCTCTCGTCTCCGTAGATCCAGAGATCCACGACCTAATCGAGAAGGAGAAACGTCGGCAATGTCGAGGAATCGAACTTATCGCTTCCGAGAATTTCACTTCCTTCGCCGTCATCGAAGCTCTCGGAAGTGCCTTAACCAACAAATACTCCGAAGGTATTCCTGGTAATCGTTATTACGGAGGTAACGAATTCATCGATGAGATCGAGAATCTTTGCCGTTCAAGAGCTCTCGAAGCTTTCCATTGTGATCCAGCAGCGTGGGGCGTTAATGTTCAGCCGTATTCTGGATCTCCGGCAAATTTCGCTGCTTACACGGCTTTGCTTCAGCCTCACGATCGTATCATGGGGCTTGATTTGCCTTCAGGTGGTCATTTGACTCATGGTTACTATACATCTGGTGGTAAGAAGATCTCTGCGACTTCGATCTACTTTGAGAGTCTTCCGTATAAGGTGAATTTCACCACTGGTTACATTGATTACGATAAGCTTGAAGAGAAGGCGTTGGATTTCAGGCCTAAGTTGCTTATCTGTGGTGGTAGTGCGTATCCTAGGGATTGGGATTACGCTAGATTTAGAGCTATTGCTGATAAGGTTGGAGCTCTTTTGCTTTGTGACATGGCTCACATCAGTGGTCTCGTTGCTGCTCAGGAAGCTGCAAACCCATTTGAGTACTGTGACGTTGTGACAACCACAACCCACAAGAGTTTGAGGGGTCCAAGGGCTGGTATGATTTTCTACAGGAAGGGTCCAAAACCACCAAAGAAGGGTCAACCCGAGGGTGCAGTCTATGATTTTGAGGACAAAATCAACTTTGCTGTATTCCCTGCGCTTCAAGGTGGTCCTCACAATCACCAGATTGGTGCTCTAGCTGTTGCGTTGAAGCAGGCTAATACTCCTGGGTTCAAGGTCTACGCAAAACAAGTGAAAGCCAATGCTGTTGCCCTTGGAAACTACCTAATGAGCAAGGGTTACCAGATTGTGACCAATGGAACTGAGAACCACCTTGTTCTCTGGGATCTTCGCCCTCTTGGATTGACCGGAAACAAGGTTGAGAAGCTCTGCGATCTGTGCAGCATTACATTGAACAAGAACGCAGTATTTGGAGACAGTAGTGCTCTTGCTCCTGGAGGTGTAAGAATCGGTGCACCCGCGATGACATCGAGAGGATTGGTGGAGAAGGACTTTGAGCAGATAGGAGAATTCCTGAGCCGTGCAGTGACACTGACGTTGGACATCCAAAAGACATACGGTAAGTTGTTGAAGGACTTCAACAAGGGTTTGGTGAACAACAAAGATCTCGATCAGCTCAAGGCTGATGTCGAGAAGTTCTCGGCGTCTTATGAGATGCCTGGATTCCTCATGTCTGAGATGAAGTACAAGGATTAG

Protein Analysis

471

Amino Acids

51.72

Weight (kDa)

6.8

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SHMT PF00464 13 - 411 3.3e-188 Serine hydroxymethyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13890 AT4G13890 AT4G13930
fragaria_vesca FvH4_4g13290 FvH4_4g13290
malus_domestica MD05G1230200.v1.1
prunus_persica Prupe.1G165100_v2.0.a1
pyrus_communis pycom04g01360 pycom420g00990
rosa_chinensis RchiOBHm_Chr4g0413581
rosa_laevigata RLG00000008211
rosa_multiflora Rmu_sc0008298.1_g000001
rosa_roxburghii Rroxscaffold_5G00357460
rosa_rugosa Rorug04G0121000
rosa_samantha Rh4AG180800 Rh4BG180000 Rh4CG191900
rosa_wichuraiana Rw4G015100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 752
AccI GTMKAC 1 cut(s) 939
AccII CGCG 1 cut(s) 1181
AciI CCGC 1 cut(s) 1179
AclWI GGATC 5 cut(s) 41, 49, 272, 325, 1053
AcsI RAATTY 5 cut(s) 121, 218, 328, 484, 1229
AcuI CTGAAG 2 cut(s) 338, 375
AcyI GRCGYC 1 cut(s) 1364
AfaI GTAC 2 cut(s) 701, 1406
AfiI CCNNNNNNNGG 4 cut(s) 314, 395, 752, 794
AgsI TTSAA 8 cut(s) 252, 521, 863, 910, 934, 1114, 1291, 1300
AjnI CCWGG 4 cut(s) 190, 925, 1153, 1378
AleI CACNNNNGTG 1 cut(s) 657
Alw21I GWGCWC 5 cut(s) 259, 631, 895, 1147, 1177
Alw26I GTCTC 4 cut(s) 16, 43, 668, 1128
Alw44I GTGCAC 1 cut(s) 1173
AlwI GGATC 5 cut(s) 41, 49, 272, 325, 1053
Ama87I CYCGRG 1 cut(s) 803
AoxI GGCC 1 cut(s) 542
ApaLI GTGCAC 1 cut(s) 1173
ApeKI GCWGC 5 cut(s) 284, 335, 671, 683, 1101
ApoI RAATTY 5 cut(s) 121, 218, 328, 484, 1229
Asp700I GAANNNNTTC 2 cut(s) 186, 1295
AspA2I CCTAGG 1 cut(s) 578
AspLEI GCGC 1 cut(s) 859
AspS9I GGNCC 3 cut(s) 743, 776, 869
AsuHPI GGTGA 4 cut(s) 481, 493, 872, 1324
AvaI CYCGRG 1 cut(s) 803
AvaII GGWCC 3 cut(s) 743, 776, 869
AvrII CCTAGG 1 cut(s) 578
BaeGI GKGCMC 1 cut(s) 1177
BaeI ACNNNNGTAYC 2 cut(s) 352, 385
BanII GRGCYC 2 cut(s) 259, 631
BbsI GAAGAC 1 cut(s) 461
Bbv12I GWGCWC 5 cut(s) 259, 631, 895, 1147, 1177
BbvI GCAGC 5 cut(s) 296, 322, 658, 670, 1113
BceAI ACGGC 5 cut(s) 122, 231, 292, 360, 1224
BciT130I CCWGG 4 cut(s) 192, 927, 1155, 1380
BciVI GTATCC 1 cut(s) 585
BcoDI GTCTC 4 cut(s) 16, 43, 668, 1128
BfaI CTAG 3 cut(s) 579, 597, 896
BfmI CTRYAG 1 cut(s) 766
BfuI GTATCC 1 cut(s) 585
BglII AGATCT 2 cut(s) 438, 1324
BisI GCNGC 5 cut(s) 285, 336, 672, 684, 1102
BlnI CCTAGG 1 cut(s) 578
BlsI GCNGC 5 cut(s) 286, 337, 673, 685, 1103
BmcAI AGTACT 1 cut(s) 701
Bme1390I CCNGG 4 cut(s) 192, 927, 1155, 1380
Bme18I GGWCC 3 cut(s) 743, 776, 869
BmeT110I CYCGRG 1 cut(s) 803
BmgT120I GGNCC 3 cut(s) 743, 776, 869
BmiI GGNNCC 3 cut(s) 6, 744, 777
BmrFI CCNGG 4 cut(s) 192, 927, 1155, 1380
BmsI GCATC 1 cut(s) 1365
BpiI GAAGAC 1 cut(s) 461
BplI GAGNNNNNCTC 2 cut(s) 1343, 1375
BpmI CTGGAG 1 cut(s) 1176
Bpu10I CCTNAGC 2 cut(s) 675, 1235
BpuEI CTTGAG 1 cut(s) 1322
Bsa29I ATCGAT 1 cut(s) 225
BsaBI GATNNNNATC 1 cut(s) 1329
BsaHI GRCGYC 1 cut(s) 1364
BsaI GGTCTC 1 cut(s) 668
BsaJI CCNNGG 5 cut(s) 578, 746, 804, 926, 973
BsaWI WCCGGW 1 cut(s) 1067
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 4 cut(s) 314, 395, 752, 794
Bse1I ACTGG 2 cut(s) 8, 499
Bse3DI GCAATG 1 cut(s) 95
Bse8I GATNNNNATC 1 cut(s) 1329
BseBI CCWGG 4 cut(s) 192, 927, 1155, 1380
BseCI ATCGAT 1 cut(s) 225
BseDI CCNNGG 5 cut(s) 578, 746, 804, 926, 973
BseGI GGATG 1 cut(s) 1263
BseJI GATNNNNATC 1 cut(s) 1329
BseLI CCNNNNNNNGG 4 cut(s) 314, 395, 752, 794
BseMI GCAATG 1 cut(s) 95
BseMII CTCAG 4 cut(s) 689, 1014, 1226, 1386
BseNI ACTGG 2 cut(s) 8, 499
BseSI GKGCMC 1 cut(s) 1177
BseXI GCAGC 5 cut(s) 296, 322, 658, 670, 1113
BsgI GTGCAG 3 cut(s) 831, 1120, 1263
Bsh1236I CGCG 1 cut(s) 1181
Bsh1285I CGRYCG 1 cut(s) 367
BshFI GGCC 1 cut(s) 544
BshVI ATCGAT 1 cut(s) 225
BsiEI CGRYCG 1 cut(s) 367
BsiHKAI GWGCWC 5 cut(s) 259, 631, 895, 1147, 1177
BsiHKCI CYCGRG 1 cut(s) 803
BsiSI CCGG 2 cut(s) 323, 1068
BslI CCNNNNNNNGG 4 cut(s) 314, 395, 752, 794
BsmAI GTCTC 4 cut(s) 16, 43, 668, 1128
BsmBI CGTCTC 1 cut(s) 43
BsnI GGCC 1 cut(s) 544
Bso31I GGTCTC 1 cut(s) 668
BsoBI CYCGRG 1 cut(s) 803
Bsp1286I GDGCHC 5 cut(s) 259, 631, 895, 1147, 1177
BspACI CCGC 1 cut(s) 1179
BspANI GGCC 1 cut(s) 544
BspCNI CTCAG 4 cut(s) 688, 1015, 1227, 1387
BspDI ATCGAT 1 cut(s) 225
BspFNI CGCG 1 cut(s) 1181
BspLI GGNNCC 3 cut(s) 6, 744, 777
BspPI GGATC 5 cut(s) 41, 49, 272, 325, 1053
BspTNI GGTCTC 1 cut(s) 668
BsrDI GCAATG 1 cut(s) 95
BsrI ACTGG 2 cut(s) 8, 499
BssECI CCNNGG 5 cut(s) 578, 746, 804, 926, 973
BssNI GRCGYC 1 cut(s) 1364
BssT1I CCWWGG 3 cut(s) 578, 746, 973
Bst2UI CCWGG 4 cut(s) 192, 927, 1155, 1380
Bst4CI ACNGT 3 cut(s) 704, 1139, 1280
Bst6I CTCTTC 2 cut(s) 19, 516
BstACI GRCGYC 1 cut(s) 1364
BstC8I GCNNGC 1 cut(s) 915
BstDEI CTNAG 5 cut(s) 546, 675, 1023, 1235, 1395
BstEII GGTNACC 1 cut(s) 998
BstF5I GGATG 1 cut(s) 1263
BstFNI CGCG 1 cut(s) 1181
BstHHI GCGC 1 cut(s) 859
BstMAI GTCTC 4 cut(s) 16, 43, 668, 1128
BstMCI CGRYCG 1 cut(s) 367
BstMWI GCNNNNNNNGC 7 cut(s) 263, 332, 344, 385, 550, 680, 1098
BstNI CCWGG 4 cut(s) 192, 927, 1155, 1380
BstPI GGTNACC 1 cut(s) 998
BstSCI CCNGG 4 cut(s) 190, 925, 1153, 1378
BstSFI CTRYAG 1 cut(s) 766
BstSLI GKGCMC 1 cut(s) 1177
BstUI CGCG 1 cut(s) 1181
BstV1I GCAGC 5 cut(s) 296, 322, 658, 670, 1113
BstV2I GAAGAC 1 cut(s) 461
BstX2I RGATCY 6 cut(s) 46, 54, 317, 438, 1045, 1324
BstXI CCANNNNNNTGG 1 cut(s) 288
BstYI RGATCY 6 cut(s) 46, 54, 317, 438, 1045, 1324
Bsu15I ATCGAT 1 cut(s) 225
BsuI GTATCC 1 cut(s) 585
BsuRI GGCC 1 cut(s) 544
BsuTUI ATCGAT 1 cut(s) 225
BtgZI GCGATG 1 cut(s) 1196
BtsCI GGATG 1 cut(s) 1263
BtsI GCAGTG 1 cut(s) 1251
BtsIMutI CAGTG 4 cut(s) 492, 664, 1250, 1251
Cac8I GCNNGC 1 cut(s) 915
CfoI GCGC 1 cut(s) 859
Cfr13I GGNCC 3 cut(s) 743, 776, 869
ClaI ATCGAT 1 cut(s) 225
CseI GACGC 1 cut(s) 1353
Csp6I GTAC 2 cut(s) 700, 1405
CviAII CATG 5 cut(s) 18, 373, 410, 646, 1390
CviQI GTAC 2 cut(s) 700, 1405
DdeI CTNAG 5 cut(s) 546, 675, 1023, 1235, 1395
Eam1104I CTCTTC 2 cut(s) 19, 516
EarI CTCTTC 2 cut(s) 19, 516
Ecl136II GAGCTC 2 cut(s) 257, 629
Eco130I CCWWGG 3 cut(s) 578, 746, 973
Eco147I AGGCCT 1 cut(s) 544
Eco24I GRGCYC 2 cut(s) 259, 631
Eco31I GGTCTC 1 cut(s) 668
Eco47I GGWCC 3 cut(s) 743, 776, 869
Eco53kI GAGCTC 2 cut(s) 257, 629
Eco57I CTGAAG 2 cut(s) 338, 375
Eco88I CYCGRG 1 cut(s) 803
Eco91I GGTNACC 1 cut(s) 998
EcoICRI GAGCTC 2 cut(s) 257, 629
EcoO65I GGTNACC 1 cut(s) 998
EcoRI GAATTC 2 cut(s) 218, 1229
EcoRII CCWGG 4 cut(s) 190, 925, 1153, 1378
EcoT14I CCWWGG 3 cut(s) 578, 746, 973
EcoT38I GRGCYC 2 cut(s) 259, 631
ErhI CCWWGG 3 cut(s) 578, 746, 973
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 5 cut(s) 21, 376, 413, 649, 1393
FatI CATG 5 cut(s) 17, 372, 409, 645, 1389
FauI CCCGC 1 cut(s) 1186
FblI GTMKAC 1 cut(s) 939
Fnu4HI GCNGC 5 cut(s) 285, 336, 672, 684, 1102
FokI GGATG 1 cut(s) 1250
FriOI GRGCYC 2 cut(s) 259, 631
Fsp4HI GCNGC 5 cut(s) 285, 336, 672, 684, 1102
FspBI CTAG 3 cut(s) 579, 597, 896
GlaI GCGC 1 cut(s) 858
GluI GCNGC 5 cut(s) 285, 336, 672, 684, 1102
GsuI CTGGAG 1 cut(s) 1176
HaeIII GGCC 1 cut(s) 544
HapII CCGG 2 cut(s) 323, 1068
HgaI GACGC 1 cut(s) 1353
HhaI GCGC 1 cut(s) 859
Hin1I GRCGYC 1 cut(s) 1364
Hin1II CATG 5 cut(s) 21, 376, 413, 649, 1393
Hin6I GCGC 1 cut(s) 857
HinP1I GCGC 1 cut(s) 857
HincII GTYRAC 1 cut(s) 800
HindII GTYRAC 1 cut(s) 800
HindIII AAGCTT 2 cut(s) 264, 515
HinfI GANTC 6 cut(s) 99, 238, 406, 466, 1167, 1383
HpaII CCGG 2 cut(s) 323, 1068
HphI GGTGA 4 cut(s) 481, 493, 872, 1324
Hpy166II GTNNAC 4 cut(s) 800, 940, 1175, 1315
Hpy188I TCNGA 4 cut(s) 118, 155, 181, 1396
Hpy8I GTNNAC 4 cut(s) 800, 940, 1175, 1315
Hpy99I CGWCG 1 cut(s) 87
HpyAV CCTTC 9 cut(s) 67, 142, 176, 399, 520, 766, 787, 1201, 1285
HpyCH4III ACNGT 3 cut(s) 704, 1139, 1280
HpyCH4IV ACGT 3 cut(s) 82, 708, 1256
HpyCH4V TGCA 5 cut(s) 686, 812, 1101, 1175, 1244
HpyF10VI GCNNNNNNNGC 7 cut(s) 263, 332, 344, 385, 550, 680, 1098
HpyF3I CTNAG 5 cut(s) 546, 675, 1023, 1235, 1395
HpySE526I ACGT 3 cut(s) 82, 708, 1256
Hsp92I GRCGYC 1 cut(s) 1364
Hsp92II CATG 5 cut(s) 21, 376, 413, 649, 1393
HspAI GCGC 1 cut(s) 857
LmnI GCTCC 2 cut(s) 626, 1156
Lsp1109I GCAGC 5 cut(s) 296, 322, 658, 670, 1113
LweI GCATC 1 cut(s) 1365
MaeI CTAG 3 cut(s) 579, 597, 896
MaeII ACGT 3 cut(s) 82, 708, 1256
MboII GAAGA 5 cut(s) 6, 448, 461, 533, 1040
MflI RGATCY 6 cut(s) 46, 54, 317, 438, 1045, 1324
MhlI GDGCHC 5 cut(s) 259, 631, 895, 1147, 1177
MluCI AATT 5 cut(s) 121, 218, 328, 484, 1229
MlyI GAGTC 2 cut(s) 400, 475
MmeI TCCRAC 3 cut(s) 513, 604, 1239
MroXI GAANNNNTTC 2 cut(s) 186, 1295
MseI TTAA 2 cut(s) 164, 297
MslI CAYNNNNRTG 1 cut(s) 657
MspI CCGG 2 cut(s) 323, 1068
MspR9I CCNGG 4 cut(s) 192, 927, 1155, 1380
MvaI CCWGG 4 cut(s) 192, 927, 1155, 1380
MvnI CGCG 1 cut(s) 1181
MwoI GCNNNNNNNGC 7 cut(s) 263, 332, 344, 385, 550, 680, 1098
NlaIII CATG 5 cut(s) 21, 376, 413, 649, 1393
NlaIV GGNNCC 3 cut(s) 6, 744, 777
NmeAIII GCCGAG 1 cut(s) 1340
NmuCI GTSAC 5 cut(s) 641, 704, 712, 1009, 1246
OliI CACNNNNGTG 1 cut(s) 657
PceI AGGCCT 1 cut(s) 544
PcsI WCGNNNNNNNCGW 6 cut(s) 66, 91, 141, 213, 222, 231
PdmI GAANNNNTTC 2 cut(s) 186, 1295
PfeI GAWTC 4 cut(s) 99, 238, 1167, 1383
PflMI CCANNNNNTGG 1 cut(s) 752
PfoI TCCNGGA 1 cut(s) 1153
PkrI GCNGC 5 cut(s) 286, 337, 673, 685, 1103
Ple19I CGATCG 1 cut(s) 367
PleI GAGTC 2 cut(s) 400, 474
PpsI GAGTC 2 cut(s) 400, 474
Psp124BI GAGCTC 2 cut(s) 259, 631
Psp6I CCWGG 4 cut(s) 190, 925, 1153, 1378
PspEI GGTNACC 1 cut(s) 998
PspGI CCWGG 4 cut(s) 190, 925, 1153, 1378
PspN4I GGNNCC 3 cut(s) 6, 744, 777
PspPI GGNCC 3 cut(s) 743, 776, 869
PsuI RGATCY 6 cut(s) 46, 54, 317, 438, 1045, 1324
PvuI CGATCG 1 cut(s) 367
RsaI GTAC 2 cut(s) 701, 1406
RsaNI GTAC 2 cut(s) 700, 1405
RseI CAYNNNNRTG 1 cut(s) 657
SacI GAGCTC 2 cut(s) 259, 631
SaqAI TTAA 2 cut(s) 164, 297
SatI GCNGC 5 cut(s) 285, 336, 672, 684, 1102
Sau96I GGNCC 3 cut(s) 743, 776, 869
ScaI AGTACT 1 cut(s) 701
SchI GAGTC 2 cut(s) 400, 475
ScrFI CCNGG 4 cut(s) 192, 927, 1155, 1380
SduI GDGCHC 5 cut(s) 259, 631, 895, 1147, 1177
SfaNI GCATC 1 cut(s) 1365
SfcI CTRYAG 1 cut(s) 766
SinI GGWCC 3 cut(s) 743, 776, 869
SmiMI CAYNNNNRTG 1 cut(s) 657
SmlI CTYRAG 1 cut(s) 1337
SmoI CTYRAG 1 cut(s) 1337
Sse9I AATT 5 cut(s) 121, 218, 328, 484, 1229
SseBI AGGCCT 1 cut(s) 544
SsiI CCGC 1 cut(s) 1179
SspMI CTAG 3 cut(s) 579, 597, 896
SstI GAGCTC 2 cut(s) 259, 631
StuI AGGCCT 1 cut(s) 544
StyD4I CCNGG 4 cut(s) 190, 925, 1153, 1378
StyI CCWWGG 3 cut(s) 578, 746, 973
TaaI ACNGT 3 cut(s) 704, 1139, 1280
TaiI ACGT 3 cut(s) 85, 711, 1259
TasI AATT 5 cut(s) 121, 218, 328, 484, 1229
TatI WGTACW 2 cut(s) 699, 1404
TfiI GAWTC 4 cut(s) 99, 238, 1167, 1383
Tru1I TTAA 2 cut(s) 164, 297
Tru9I TTAA 2 cut(s) 164, 297
TscAI CASTG 4 cut(s) 499, 664, 1251, 1257
TseFI GTSAC 5 cut(s) 641, 704, 712, 1009, 1246
TseI GCWGC 5 cut(s) 284, 335, 671, 683, 1101
Tsp45I GTSAC 5 cut(s) 641, 704, 712, 1009, 1246
TspDTI ATGAA 3 cut(s) 6, 211, 1415
TspGWI ACGGA 3 cut(s) 31, 222, 462
TspRI CASTG 4 cut(s) 499, 664, 1251, 1257
Van91I CCANNNNNTGG 1 cut(s) 752
VneI GTGCAC 1 cut(s) 1173
VpaK11BI GGWCC 3 cut(s) 743, 776, 869
XapI RAATTY 5 cut(s) 121, 218, 328, 484, 1229
XcmI CCANNNNNNNNNTGG 1 cut(s) 15
XmaJI CCTAGG 1 cut(s) 578
XmiI GTMKAC 1 cut(s) 939
XmnI GAANNNNTTC 2 cut(s) 186, 1295
XspI CTAG 3 cut(s) 579, 597, 896
ZrmI AGTACT 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.