Rh4BG180000

Interconversion of serine and glycine

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
31800803 .. 31803605
2803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG180000.1

Sequence Viewer

Length: 1080 bp
ATGGAGGCAGTAAACGCATGGGGTAACACCAACCTGGAGGCCGTGGACCCAGAGATCCACGACCTGATTGAGAAGGAGAAGCGTCGCCAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTCGCCGTCATCGAGGCCCTCGGCAGCGCCCTCACCAACAAATACTCCGAGGGCATGCCCGGCAACCGCTACTACGGCGGCAACGAGTACATCGACCAGATCGAGAATCTCTGCCGCTCACGCGCCCTCCAGGCCTTCCACCTCGACGCGTCTCAGTGGGGCGTCAATGTCCAGCCCTACTCCGGCTCCCCGGCCAACTTCGCCGCCTACACCGCCGTGCTCCAGCCCCACGACCGCATCATGGGCCTGGACCTCCCCTCCGGCGGGCACTTGACCCACGGTTACTACACCTCCGGCGGGAAGAAGATCTCCGCCACCTCGATCTACTTCGAGAGTCTGCCGTACAAGGTGAATTCCTCCACCGGGTACATTGATTACGACAAGCTGGAGGAGAAGGCCTTGGATTTCAGGCCGAGATTGATCATTTGCGGCGGGAGTGCGTATCCCAGAGACTGGGACTACGCCAGGTTCAGGGCTGTGGCGGATAAGTGCGGTGCGCTTTTGCTCTGTGACATGGCTCACATCAGTGGCCTTGTTTGTGCGCAGGAAGCTGCAAATCCATTTGAGTTCTGTGACATTGTCACAACCACAACCCACAAGAGTTTGAGGGGACCTAGGGCTGGTATGATCTTTTACAGGAAGGGGCCTAAGCCACCCAAGAAGGGCCAGCCAGAGGGTGCAGAATATGACTTTGAAGACAAGATCAACTTTGCTGTCTTCCCCTCGCTTCAGGGTGGTCCTCATAATCACCAGATTGGTGCTCTCGCTGTTGCTCTTAAGCAGGCCATGACACCTGGGTTCAAAGCCTATGCTCAACAAGTCAAGGCCAATGCTGTTGCCCTTGGAAAGTATCTGATGAGCAAGGATTACAAGCTTGTCACAGGAGGAACCGAGAACCACCTTGTTCTGTGGGATCTCAGGCCTCTTGGTTTGACTGGTATATTCTGA

Protein Analysis

359

Amino Acids

39.55

Weight (kDa)

6.79

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SHMT PF00464 12 - 357 7.5e-164 Serine hydroxymethyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13890 AT4G13890 AT4G13930
fragaria_vesca FvH4_4g13290 FvH4_4g13290
malus_domestica MD05G1230200.v1.1
prunus_persica Prupe.1G165100_v2.0.a1
pyrus_communis pycom04g01360 pycom420g00990
rosa_chinensis RchiOBHm_Chr4g0413581
rosa_laevigata RLG00000008211
rosa_multiflora Rmu_sc0008298.1_g000001
rosa_roxburghii Rroxscaffold_5G00357460
rosa_rugosa Rorug04G0121000
rosa_samantha Rh4AG180800 Rh4BG180000 Rh4CG191900
rosa_wichuraiana Rw4G015100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 675
AccB7I CCANNNNNTGG 1 cut(s) 585
AccBSI CCGCTC 1 cut(s) 249
AccII CGCG 3 cut(s) 96, 255, 281
AclWI GGATC 2 cut(s) 49, 1053
AcoI YGGCCR 1 cut(s) 324
AcsI RAATTY 1 cut(s) 484
AcuI CTGAAG 1 cut(s) 845
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 3 cut(s) 221, 476, 500
AflII CTTAAG 1 cut(s) 908
AflIII ACRYGT 1 cut(s) 279
AgsI TTSAA 2 cut(s) 827, 934
AjnI CCWGG 5 cut(s) 33, 261, 378, 596, 925
AleI CACNNNNGTG 2 cut(s) 347, 657
AloI GAACNNNNNNTCC 2 cut(s) 113, 145
AluBI AGCT 4 cut(s) 106, 517, 683, 1006
AluI AGCT 4 cut(s) 106, 517, 683, 1006
Alw21I GWGCWC 3 cut(s) 108, 354, 895
Alw26I GTCTC 2 cut(s) 288, 576
AlwI GGATC 2 cut(s) 49, 1053
AlwNI CAGNNNCTG 1 cut(s) 585
ApeKI GCWGC 2 cut(s) 156, 683
ApoI RAATTY 1 cut(s) 484
AspA2I CCTAGG 1 cut(s) 746
AspLEI GCGC 4 cut(s) 161, 257, 631, 676
AspS9I GGNCC 8 cut(s) 46, 148, 376, 382, 743, 776, 796, 869
AsuC2I CCSGG 3 cut(s) 192, 323, 496
AsuHPI GGTGA 4 cut(s) 118, 157, 493, 872
AvaII GGWCC 4 cut(s) 46, 382, 743, 869
AvrII CCTAGG 1 cut(s) 746
BaeGI GKGCMC 1 cut(s) 402
BanII GRGCYC 1 cut(s) 108
BbsI GAAGAC 2 cut(s) 834, 841
Bbv12I GWGCWC 3 cut(s) 108, 354, 895
BbvI GCAGC 2 cut(s) 168, 670
BceAI ACGGC 5 cut(s) 26, 122, 223, 332, 457
BciT130I CCWGG 5 cut(s) 35, 263, 380, 598, 927
BciVI GTATCC 1 cut(s) 585
BclI TGATCA 1 cut(s) 552
BcnI CCSGG 3 cut(s) 192, 323, 496
BcoDI GTCTC 2 cut(s) 288, 576
BfaI CTAG 1 cut(s) 747
BfoI RGCGCY 1 cut(s) 162
BfrI CTTAAG 1 cut(s) 908
BfuI GTATCC 1 cut(s) 585
BglI GCCNNNNNGGC 1 cut(s) 263
BglII AGATCT 1 cut(s) 438
BisI GCNGC 8 cut(s) 94, 97, 157, 211, 247, 336, 562, 684
BlnI CCTAGG 1 cut(s) 746
BlsI GCNGC 8 cut(s) 95, 98, 158, 212, 248, 337, 563, 685
Bme1390I CCNGG 8 cut(s) 35, 192, 263, 323, 380, 496, 598, 927
Bme18I GGWCC 4 cut(s) 46, 382, 743, 869
BmgT120I GGNCC 8 cut(s) 46, 148, 376, 382, 743, 776, 796, 869
BmiI GGNNCC 5 cut(s) 48, 319, 744, 777, 1021
BmrFI CCNGG 8 cut(s) 35, 192, 263, 323, 380, 496, 598, 927
BmrI ACTGGG 1 cut(s) 595
BmsI GCATC 2 cut(s) 108, 378
BmuI ACTGGG 1 cut(s) 595
BpiI GAAGAC 2 cut(s) 834, 841
BpmI CTGGAG 4 cut(s) 56, 245, 338, 539
Bpu10I CCTNAGC 1 cut(s) 780
BpuMI CCSGG 3 cut(s) 192, 323, 496
BsaHI GRCGYC 1 cut(s) 294
Bse1I ACTGG 2 cut(s) 590, 1072
BseBI CCWGG 5 cut(s) 35, 263, 380, 598, 927
BseMII CTCAG 2 cut(s) 299, 1063
BseNI ACTGG 2 cut(s) 590, 1072
BseRI GAGGAG 1 cut(s) 536
BseSI GKGCMC 1 cut(s) 402
BseXI GCAGC 2 cut(s) 168, 670
BsgI GTGCAG 1 cut(s) 831
Bsh1236I CGCG 3 cut(s) 96, 255, 281
Bsh1285I CGRYCG 1 cut(s) 367
BsiEI CGRYCG 1 cut(s) 367
BsiHKAI GWGCWC 3 cut(s) 108, 354, 895
BsiSI CCGG 6 cut(s) 192, 315, 323, 393, 426, 495
BslFI GGGAC 2 cut(s) 602, 756
BsmAI GTCTC 2 cut(s) 288, 576
BsmBI CGTCTC 1 cut(s) 288
BsmFI GGGAC 2 cut(s) 602, 756
Bsp1286I GDGCHC 4 cut(s) 108, 354, 402, 895
Bsp143I GATC 8 cut(s) 54, 231, 438, 453, 552, 759, 834, 1045
BspCNI CTCAG 2 cut(s) 298, 1062
BspFNI CGCG 3 cut(s) 96, 255, 281
BspLI GGNNCC 5 cut(s) 48, 319, 744, 777, 1021
BspPI GGATC 2 cut(s) 49, 1053
BspTI CTTAAG 1 cut(s) 908
BsrBI CCGCTC 1 cut(s) 249
BsrI ACTGG 2 cut(s) 590, 1072
BssMI GATC 8 cut(s) 54, 231, 438, 453, 552, 759, 834, 1045
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 3 cut(s) 531, 746, 973
Bst2UI CCWGG 5 cut(s) 35, 263, 380, 598, 927
Bst4CI ACNGT 1 cut(s) 413
BstACI GRCGYC 1 cut(s) 294
BstAFI CTTAAG 1 cut(s) 908
BstC8I GCNNGC 4 cut(s) 188, 398, 800, 915
BstDEI CTNAG 3 cut(s) 285, 780, 1049
BstDSI CCRYGG 3 cut(s) 42, 94, 409
BstFNI CGCG 3 cut(s) 96, 255, 281
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 4 cut(s) 161, 257, 631, 676
BstKTI GATC 8 cut(s) 57, 234, 441, 456, 555, 762, 837, 1048
BstMAI GTCTC 2 cut(s) 288, 576
BstMBI GATC 8 cut(s) 54, 231, 438, 453, 552, 759, 834, 1045
BstMCI CGRYCG 1 cut(s) 367
BstNI CCWGG 5 cut(s) 35, 263, 380, 598, 927
BstNSI RCATGY 1 cut(s) 190
BstSCI CCNGG 8 cut(s) 33, 190, 261, 321, 378, 494, 596, 925
BstSLI GKGCMC 1 cut(s) 402
BstUI CGCG 3 cut(s) 96, 255, 281
BstV1I GCAGC 2 cut(s) 168, 670
BstV2I GAAGAC 2 cut(s) 834, 841
BstX2I RGATCY 3 cut(s) 54, 438, 1045
BstYI RGATCY 3 cut(s) 54, 438, 1045
BsuI GTATCC 1 cut(s) 585
BtgI CCRYGG 3 cut(s) 42, 94, 409
BtgZI GCGATG 1 cut(s) 94
BtsIMutI CAGTG 2 cut(s) 293, 664
Cac8I GCNNGC 4 cut(s) 188, 398, 800, 915
CaiI CAGNNNCTG 1 cut(s) 585
CfoI GCGC 4 cut(s) 161, 257, 631, 676
Cfr13I GGNCC 8 cut(s) 46, 148, 376, 382, 743, 776, 796, 869
Cfr42I CCGCGG 1 cut(s) 97
CseI GACGC 4 cut(s) 71, 270, 283, 287
Csp6I GTAC 3 cut(s) 220, 475, 499
CviAII CATG 5 cut(s) 18, 187, 373, 646, 919
CviQI GTAC 3 cut(s) 220, 475, 499
DdeI CTNAG 3 cut(s) 285, 780, 1049
DpnI GATC 8 cut(s) 56, 233, 440, 455, 554, 761, 836, 1047
DpnII GATC 8 cut(s) 54, 231, 438, 453, 552, 759, 834, 1045
EaeI YGGCCR 1 cut(s) 324
EciI GGCGGA 2 cut(s) 433, 629
Ecl136II GAGCTC 1 cut(s) 106
Eco130I CCWWGG 3 cut(s) 531, 746, 973
Eco147I AGGCCT 3 cut(s) 266, 530, 1054
Eco24I GRGCYC 1 cut(s) 108
Eco47I GGWCC 4 cut(s) 46, 382, 743, 869
Eco53kI GAGCTC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 845
EcoICRI GAGCTC 1 cut(s) 106
EcoO109I RGGNCCY 3 cut(s) 148, 743, 776
EcoRI GAATTC 1 cut(s) 484
EcoRII CCWGG 5 cut(s) 33, 261, 378, 596, 925
EcoT14I CCWWGG 3 cut(s) 531, 746, 973
EcoT38I GRGCYC 1 cut(s) 108
ErhI CCWWGG 3 cut(s) 531, 746, 973
Esp3I CGTCTC 1 cut(s) 288
FaeI CATG 5 cut(s) 21, 190, 376, 649, 922
FalI AAGNNNNNCTT 2 cut(s) 824, 856
FaqI GGGAC 2 cut(s) 602, 756
FatI CATG 5 cut(s) 17, 186, 372, 645, 918
FauI CCCGC 3 cut(s) 389, 422, 557
FbaI TGATCA 1 cut(s) 552
Fnu4HI GCNGC 8 cut(s) 94, 97, 157, 211, 247, 336, 562, 684
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 8 cut(s) 94, 97, 157, 211, 247, 336, 562, 684
FspBI CTAG 1 cut(s) 747
FspI TGCGCA 1 cut(s) 675
GlaI GCGC 4 cut(s) 160, 256, 630, 675
GluI GCNGC 8 cut(s) 94, 97, 157, 211, 247, 336, 562, 684
GsuI CTGGAG 4 cut(s) 56, 245, 338, 539
HaeII RGCGCY 1 cut(s) 162
HapII CCGG 6 cut(s) 192, 315, 323, 393, 426, 495
HgaI GACGC 4 cut(s) 71, 270, 283, 287
HhaI GCGC 4 cut(s) 161, 257, 631, 676
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 5 cut(s) 21, 190, 376, 649, 922
Hin6I GCGC 4 cut(s) 159, 255, 629, 674
HinP1I GCGC 4 cut(s) 159, 255, 629, 674
HindIII AAGCTT 1 cut(s) 1004
HinfI GANTC 2 cut(s) 238, 466
HpaII CCGG 6 cut(s) 192, 315, 323, 393, 426, 495
HphI GGTGA 4 cut(s) 118, 157, 493, 872
Hpy166II GTNNAC 2 cut(s) 13, 46
Hpy188I TCNGA 4 cut(s) 118, 181, 987, 1079
Hpy188III TCNNGA 2 cut(s) 235, 463
Hpy8I GTNNAC 2 cut(s) 13, 46
Hpy99I CGWCG 2 cut(s) 87, 281
HpyAV CCTTC 6 cut(s) 67, 142, 277, 520, 766, 787
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4V TGCA 2 cut(s) 686, 812
HpyF3I CTNAG 3 cut(s) 285, 780, 1049
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 5 cut(s) 21, 190, 376, 649, 922
HspAI GCGC 4 cut(s) 159, 255, 629, 674
Ksp22I TGATCA 1 cut(s) 552
KspI CCGCGG 1 cut(s) 97
Kzo9I GATC 8 cut(s) 54, 231, 438, 453, 552, 759, 834, 1045
LmnI GCTCC 2 cut(s) 323, 357
Lsp1109I GCAGC 2 cut(s) 168, 670
LweI GCATC 2 cut(s) 108, 378
MaeI CTAG 1 cut(s) 747
MaeIII GTNAC 6 cut(s) 23, 413, 641, 704, 712, 1009
MalI GATC 8 cut(s) 56, 233, 440, 455, 554, 761, 836, 1047
MbiI CCGCTC 1 cut(s) 249
MboI GATC 8 cut(s) 54, 231, 438, 453, 552, 759, 834, 1045
MboII GAAGA 4 cut(s) 445, 448, 839, 841
MflI RGATCY 3 cut(s) 54, 438, 1045
MhlI GDGCHC 4 cut(s) 108, 354, 402, 895
MluCI AATT 1 cut(s) 484
MluI ACGCGT 1 cut(s) 279
MlyI GAGTC 1 cut(s) 475
MseI TTAA 1 cut(s) 909
MslI CAYNNNNRTG 2 cut(s) 347, 657
MspA1I CMGCKG 1 cut(s) 96
MspCI CTTAAG 1 cut(s) 908
MspI CCGG 6 cut(s) 192, 315, 323, 393, 426, 495
MspR9I CCNGG 8 cut(s) 35, 192, 263, 323, 380, 496, 598, 927
MvaI CCWGG 5 cut(s) 35, 263, 380, 598, 927
MvnI CGCG 3 cut(s) 96, 255, 281
NciI CCSGG 3 cut(s) 192, 323, 496
NdeII GATC 8 cut(s) 54, 231, 438, 453, 552, 759, 834, 1045
NlaIII CATG 5 cut(s) 21, 190, 376, 649, 922
NlaIV GGNNCC 5 cut(s) 48, 319, 744, 777, 1021
NmeAIII GCCGAG 2 cut(s) 132, 570
NmuCI GTSAC 4 cut(s) 641, 704, 712, 1009
NsbI TGCGCA 1 cut(s) 675
NspI RCATGY 1 cut(s) 190
OliI CACNNNNGTG 2 cut(s) 347, 657
PaeI GCATGC 1 cut(s) 190
PceI AGGCCT 3 cut(s) 266, 530, 1054
PcsI WCGNNNNNNNCGW 4 cut(s) 141, 213, 222, 231
PfeI GAWTC 1 cut(s) 238
PflFI GACNNNGTC 1 cut(s) 710
PflMI CCANNNNNTGG 1 cut(s) 585
PkrI GCNGC 8 cut(s) 95, 98, 158, 212, 248, 337, 563, 685
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
PpuMI RGGWCCY 1 cut(s) 743
Psp124BI GAGCTC 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 743
Psp6I CCWGG 5 cut(s) 33, 261, 378, 596, 925
PspGI CCWGG 5 cut(s) 33, 261, 378, 596, 925
PspN4I GGNNCC 5 cut(s) 48, 319, 744, 777, 1021
PspPI GGNCC 8 cut(s) 46, 148, 376, 382, 743, 776, 796, 869
PspPPI RGGWCCY 1 cut(s) 743
PstNI CAGNNNCTG 1 cut(s) 585
PsuI RGATCY 3 cut(s) 54, 438, 1045
PsyI GACNNNGTC 1 cut(s) 710
RsaI GTAC 3 cut(s) 221, 476, 500
RsaNI GTAC 3 cut(s) 220, 475, 499
RseI CAYNNNNRTG 2 cut(s) 347, 657
SacI GAGCTC 1 cut(s) 108
SacII CCGCGG 1 cut(s) 97
SaqAI TTAA 1 cut(s) 909
SatI GCNGC 8 cut(s) 94, 97, 157, 211, 247, 336, 562, 684
Sau3AI GATC 8 cut(s) 54, 231, 438, 453, 552, 759, 834, 1045
Sau96I GGNCC 8 cut(s) 46, 148, 376, 382, 743, 776, 796, 869
SchI GAGTC 1 cut(s) 475
ScrFI CCNGG 8 cut(s) 35, 192, 263, 323, 380, 496, 598, 927
SduI GDGCHC 4 cut(s) 108, 354, 402, 895
SfaNI GCATC 2 cut(s) 108, 378
Sfr303I CCGCGG 1 cut(s) 97
SgrBI CCGCGG 1 cut(s) 97
SinI GGWCC 4 cut(s) 46, 382, 743, 869
SmiMI CAYNNNNRTG 2 cut(s) 347, 657
SmlI CTYRAG 1 cut(s) 908
SmoI CTYRAG 1 cut(s) 908
SphI GCATGC 1 cut(s) 190
Sse9I AATT 1 cut(s) 484
SseBI AGGCCT 3 cut(s) 266, 530, 1054
SspMI CTAG 1 cut(s) 747
SstI GAGCTC 1 cut(s) 108
StuI AGGCCT 3 cut(s) 266, 530, 1054
StyD4I CCNGG 8 cut(s) 33, 190, 261, 321, 378, 494, 596, 925
StyI CCWWGG 3 cut(s) 531, 746, 973
TaaI ACNGT 1 cut(s) 413
TaqI TCGA 7 cut(s) 102, 144, 225, 234, 276, 452, 462
TasI AATT 1 cut(s) 484
TatI WGTACW 1 cut(s) 219
TauI GCSGC 6 cut(s) 96, 99, 213, 249, 338, 564
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 909
Tru9I TTAA 1 cut(s) 909
TscAI CASTG 2 cut(s) 293, 664
TseFI GTSAC 4 cut(s) 641, 704, 712, 1009
TseI GCWGC 2 cut(s) 156, 683
Tsp45I GTSAC 4 cut(s) 641, 704, 712, 1009
TspRI CASTG 2 cut(s) 293, 664
Tth111I GACNNNGTC 1 cut(s) 710
Van91I CCANNNNNTGG 1 cut(s) 585
Vha464I CTTAAG 1 cut(s) 908
VpaK11BI GGWCC 4 cut(s) 46, 382, 743, 869
XapI RAATTY 1 cut(s) 484
XceI RCATGY 1 cut(s) 190
XmaJI CCTAGG 1 cut(s) 746
XspI CTAG 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.