FvH4_4g13290

Interconversion of serine and glycine

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
16876052 .. 16878959
2908 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13290.t2

Sequence Viewer

Length: 1416 bp
ATGGATCCAGTAAACGACTGGGGCAACACCCCCCTGAACGCCGTGGACCCAGAGATCCACGACCTGATCGAGAAGGAGAAGCGTCGCCAATGCCGCGGCATCGAGCTGATCGCGTCGGAGAATTTCACCTCCTTCGCCGTCATCGAGGCACTCGGCAGCGCCCTCACCAACAAATACTCCGAAGGAATGCCCGGCAACCGCTACTACGGCGGCAACGAGTTCATCGACGAGATCGAGAATCTCTGCCGCGCACGCGCCCTCAAGGCGTTTCACCTCGACGCGTCTCAATGGGGCGTCAATGTCCAACCCTACTCCGGCTCCCCCGCCAACTTCGCCGCCTACACCGCCGTCCTCAACCCCCACGACCGCATCATGGGCCTTGACCTCCCCTCCGGCGGTCACTTGACCCATGGATACTACACCTCCGGCGGCAAGAAGATCTCGGCCACGTCGATCTACTTCGAGTCTCTTCCCTACAAGGTGAACAACACAACTGGTTACATTGATTACGATAAGCTGGAGGAGAAGGCCTTGGATTTCAGGCCGAGGTTGATCATCTGCGGTGGGAGTGCTTATCCTAGGGACTGGGACTACGCCAGGTTCAGGTCTGTGGCTGATAAGTGCGGTGCGCTTTTGCTTTGCGACATGGCTCACATCAGTGGCCTTGTTTGTGCTCAGGAAGCTGCAAATCCATTTGAGTTCTGTGACATTGTCACAACCACAACCCACAAGAGCTTGAGGGGACCTAGGGCTGGTATGATCTTTTACAGGAAGGGGCCTAAGCCACCGAAGAAGGGCCAGCCAGAGGGTGCAGAATATGATTTTGAAGACAAGATCAACTTTTCTGTTTTCCCCTCACTTCAGGGTGGTCCTCATAATCACCAGATTGGTGCTCTCGCTGTTGCTCTCAAGCAGGCCATGACACCTGGGTTCAAAGCCTATGCAAAACAAGTCAAGGCCAATGCTGTTGCCCTTGGAAAGTATCTGATGAGCAAGGATTACAAGCTTGTCACAGGAGGAACCGAGAACCACCTTGTTCTGTGGGATCTCAGGCCTCTTGGGTTGACTGGCAACAAGGTTGAGAAGCTTTGTGACCTAGCAAACATTACTGTCAACAAGAATGCTGTTTTTGGTGACAGCAGTGCCTTGGCTCCTGGAGGAGTAAGAATTGGTACTCCAGCCATGACTTCAAGAGGTTTGCTTGAGAAGGACTTTGAGAAGATTGGTGAGTTTCTTCATAGGGCTGTGACCCTCACATTGAAGATCCAGAAGGAATATGGAAAGCTACTGAAAGACTTCAACAAGGGGTTGGTGAACAACAAGGAAATTGAAGAACTCAAGGCTGATGTTGAAAAGTTCTCCTCCTTATTTGACATGCCTGGTTTCGTGATGTCTGAAATGAAGTACAAGGATTGA

Protein Analysis

472

Amino Acids

52.04

Weight (kDa)

7.58

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SHMT PF00464 12 - 391 4.4e-178 Serine hydroxymethyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13890 AT4G13890 AT4G13930
fragaria_vesca FvH4_4g13290 FvH4_4g13290
malus_domestica MD05G1230200.v1.1
prunus_persica Prupe.1G165100_v2.0.a1
pyrus_communis pycom04g01360 pycom420g00990
rosa_chinensis RchiOBHm_Chr4g0413581
rosa_laevigata RLG00000008211
rosa_multiflora Rmu_sc0008298.1_g000001
rosa_roxburghii Rroxscaffold_5G00357460
rosa_rugosa Rorug04G0121000
rosa_samantha Rh4AG180800 Rh4BG180000 Rh4CG191900
rosa_wichuraiana Rw4G015100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 96, 113, 249, 255, 281
AclWI GGATC 4 cut(s) 12, 49, 1053, 1258
AcoI YGGCCR 1 cut(s) 444
AcsI RAATTY 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 845
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 2 cut(s) 1174, 1406
AfiI CCNNNNNNNGG 7 cut(s) 314, 373, 395, 603, 752, 794, 805
AflIII ACRYGT 1 cut(s) 279
AgsI TTSAA 7 cut(s) 827, 934, 1191, 1261, 1300, 1331, 1352
AjiI CACGTC 1 cut(s) 450
AjnI CCWGG 4 cut(s) 596, 925, 1153, 1378
AleI CACNNNNGTG 1 cut(s) 657
AluBI AGCT 7 cut(s) 106, 517, 683, 735, 1006, 1087, 1285
AluI AGCT 7 cut(s) 106, 517, 683, 735, 1006, 1087, 1285
Alw21I GWGCWC 2 cut(s) 676, 895
Alw26I GTCTC 2 cut(s) 288, 471
AlwI GGATC 4 cut(s) 12, 49, 1053, 1258
ApeKI GCWGC 2 cut(s) 156, 683
ApoI RAATTY 1 cut(s) 121
Asp700I GAANNNNTTC 1 cut(s) 1295
AspA2I CCTAGG 2 cut(s) 578, 746
AspLEI GCGC 4 cut(s) 161, 251, 257, 631
AspS9I GGNCC 6 cut(s) 46, 376, 743, 776, 796, 869
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 8 cut(s) 118, 157, 263, 493, 872, 1145, 1238, 1324
AvaII GGWCC 3 cut(s) 46, 743, 869
AvrII CCTAGG 2 cut(s) 578, 746
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 834
Bbv12I GWGCWC 2 cut(s) 676, 895
BbvI GCAGC 2 cut(s) 168, 670
BceAI ACGGC 4 cut(s) 26, 122, 223, 332
BciT130I CCWGG 4 cut(s) 598, 927, 1155, 1380
BciVI GTATCC 1 cut(s) 407
BclI TGATCA 1 cut(s) 552
BcnI CCSGG 1 cut(s) 192
BcoDI GTCTC 2 cut(s) 288, 471
BfaI CTAG 3 cut(s) 579, 747, 1097
BfoI RGCGCY 1 cut(s) 162
BfuI GTATCC 1 cut(s) 407
BglI GCCNNNNNGGC 1 cut(s) 263
BglII AGATCT 1 cut(s) 438
BisI GCNGC 8 cut(s) 94, 97, 157, 211, 247, 336, 430, 684
BlnI CCTAGG 2 cut(s) 578, 746
BlsI GCNGC 8 cut(s) 95, 98, 158, 212, 248, 337, 431, 685
Bme1390I CCNGG 5 cut(s) 192, 598, 927, 1155, 1380
Bme18I GGWCC 3 cut(s) 46, 743, 869
BmgBI CACGTC 1 cut(s) 450
BmgT120I GGNCC 6 cut(s) 46, 376, 743, 776, 796, 869
BmiI GGNNCC 7 cut(s) 6, 48, 319, 744, 777, 1021, 1152
BmrFI CCNGG 5 cut(s) 192, 598, 927, 1155, 1380
BmrI ACTGGG 2 cut(s) 28, 595
BmsI GCATC 2 cut(s) 108, 378
BmuI ACTGGG 2 cut(s) 28, 595
BpiI GAAGAC 1 cut(s) 834
BpmI CTGGAG 3 cut(s) 539, 1161, 1176
Bpu10I CCTNAGC 2 cut(s) 675, 780
BpuEI CTTGAG 5 cut(s) 245, 757, 893, 1223, 1322
BpuMI CCSGG 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 294
BsaXI ACNNNNNCTCC 8 cut(s) 161, 191, 302, 332, 374, 404, 407, 437
Bsc4I CCNNNNNNNGG 7 cut(s) 314, 373, 395, 603, 752, 794, 805
Bse1I ACTGG 5 cut(s) 8, 23, 499, 590, 1072
BseBI CCWGG 4 cut(s) 598, 927, 1155, 1380
BseLI CCNNNNNNNGG 7 cut(s) 314, 373, 395, 603, 752, 794, 805
BseMII CTCAG 2 cut(s) 689, 1063
BseNI ACTGG 5 cut(s) 8, 23, 499, 590, 1072
BseRI GAGGAG 3 cut(s) 536, 1173, 1351
BseXI GCAGC 2 cut(s) 168, 670
BsgI GTGCAG 1 cut(s) 831
Bsh1236I CGCG 5 cut(s) 96, 113, 249, 255, 281
Bsh1285I CGRYCG 1 cut(s) 367
BsiEI CGRYCG 1 cut(s) 367
BsiHKAI GWGCWC 2 cut(s) 676, 895
BsiSI CCGG 4 cut(s) 192, 315, 393, 426
BslFI GGGAC 3 cut(s) 596, 602, 756
BslI CCNNNNNNNGG 7 cut(s) 314, 373, 395, 603, 752, 794, 805
BsmAI GTCTC 2 cut(s) 288, 471
BsmBI CGTCTC 1 cut(s) 288
BsmFI GGGAC 3 cut(s) 596, 602, 756
BsmI GAATGC 2 cut(s) 192, 1126
Bsp1286I GDGCHC 2 cut(s) 676, 895
Bsp19I CCATGG 1 cut(s) 409
BspCNI CTCAG 2 cut(s) 688, 1062
BspFNI CGCG 5 cut(s) 96, 113, 249, 255, 281
BspLI GGNNCC 7 cut(s) 6, 48, 319, 744, 777, 1021, 1152
BspPI GGATC 4 cut(s) 12, 49, 1053, 1258
BsrI ACTGG 5 cut(s) 8, 23, 499, 590, 1072
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 6 cut(s) 409, 531, 578, 746, 973, 1146
Bst2UI CCWGG 4 cut(s) 598, 927, 1155, 1380
Bst4CI ACNGT 1 cut(s) 1111
Bst6I CTCTTC 1 cut(s) 474
BstACI GRCGYC 1 cut(s) 294
BstC8I GCNNGC 3 cut(s) 253, 800, 915
BstDEI CTNAG 3 cut(s) 675, 780, 1049
BstDSI CCRYGG 3 cut(s) 42, 94, 409
BstFNI CGCG 5 cut(s) 96, 113, 249, 255, 281
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 4 cut(s) 161, 251, 257, 631
BstMAI GTCTC 2 cut(s) 288, 471
BstMCI CGRYCG 1 cut(s) 367
BstMWI GCNNNNNNNGC 8 cut(s) 93, 207, 252, 263, 332, 344, 375, 680
BstNI CCWGG 4 cut(s) 598, 927, 1155, 1380
BstNSI RCATGY 1 cut(s) 1378
BstSCI CCNGG 5 cut(s) 190, 596, 925, 1153, 1378
BstUI CGCG 5 cut(s) 96, 113, 249, 255, 281
BstV1I GCAGC 2 cut(s) 168, 670
BstV2I GAAGAC 1 cut(s) 834
BstX2I RGATCY 5 cut(s) 4, 54, 438, 1045, 1263
BstYI RGATCY 5 cut(s) 4, 54, 438, 1045, 1263
BsuI GTATCC 1 cut(s) 407
BtgI CCRYGG 3 cut(s) 42, 94, 409
BtrI CACGTC 1 cut(s) 450
BtsI GCAGTG 1 cut(s) 1147
BtsIMutI CAGTG 2 cut(s) 664, 1147
Cac8I GCNNGC 3 cut(s) 253, 800, 915
CfoI GCGC 4 cut(s) 161, 251, 257, 631
Cfr13I GGNCC 6 cut(s) 46, 376, 743, 776, 796, 869
Cfr42I CCGCGG 1 cut(s) 97
CseI GACGC 5 cut(s) 71, 102, 270, 283, 287
Csp6I GTAC 2 cut(s) 1173, 1405
CviAII CATG 6 cut(s) 373, 410, 646, 919, 1183, 1375
CviQI GTAC 2 cut(s) 1173, 1405
DdeI CTNAG 3 cut(s) 675, 780, 1049
EaeI YGGCCR 1 cut(s) 444
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Eco130I CCWWGG 6 cut(s) 409, 531, 578, 746, 973, 1146
Eco147I AGGCCT 2 cut(s) 530, 1054
Eco47I GGWCC 3 cut(s) 46, 743, 869
Eco57I CTGAAG 1 cut(s) 845
EcoO109I RGGNCCY 2 cut(s) 743, 776
EcoRII CCWGG 4 cut(s) 596, 925, 1153, 1378
EcoT14I CCWWGG 6 cut(s) 409, 531, 578, 746, 973, 1146
ErhI CCWWGG 6 cut(s) 409, 531, 578, 746, 973, 1146
Esp3I CGTCTC 1 cut(s) 288
FaeI CATG 6 cut(s) 376, 413, 649, 922, 1186, 1378
FalI AAGNNNNNCTT 2 cut(s) 824, 856
FaqI GGGAC 3 cut(s) 596, 602, 756
FatI CATG 6 cut(s) 372, 409, 645, 918, 1182, 1374
FauI CCCGC 1 cut(s) 331
FbaI TGATCA 1 cut(s) 552
Fnu4HI GCNGC 8 cut(s) 94, 97, 157, 211, 247, 336, 430, 684
Fsp4HI GCNGC 8 cut(s) 94, 97, 157, 211, 247, 336, 430, 684
FspBI CTAG 3 cut(s) 579, 747, 1097
GlaI GCGC 4 cut(s) 160, 250, 256, 630
GluI GCNGC 8 cut(s) 94, 97, 157, 211, 247, 336, 430, 684
GsuI CTGGAG 3 cut(s) 539, 1161, 1176
HaeII RGCGCY 1 cut(s) 162
HapII CCGG 4 cut(s) 192, 315, 393, 426
HgaI GACGC 5 cut(s) 71, 102, 270, 283, 287
HhaI GCGC 4 cut(s) 161, 251, 257, 631
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 6 cut(s) 376, 413, 649, 922, 1186, 1378
Hin6I GCGC 4 cut(s) 159, 249, 255, 629
HinP1I GCGC 4 cut(s) 159, 249, 255, 629
HincII GTYRAC 2 cut(s) 1065, 1114
HindII GTYRAC 2 cut(s) 1065, 1114
HindIII AAGCTT 2 cut(s) 1004, 1085
HinfI GANTC 2 cut(s) 238, 464
HpaII CCGG 4 cut(s) 192, 315, 393, 426
HphI GGTGA 8 cut(s) 118, 157, 263, 493, 872, 1145, 1238, 1324
Hpy166II GTNNAC 6 cut(s) 13, 46, 484, 1065, 1114, 1315
Hpy188I TCNGA 4 cut(s) 118, 181, 987, 1396
Hpy188III TCNNGA 6 cut(s) 70, 235, 677, 1191, 1267, 1387
Hpy8I GTNNAC 6 cut(s) 13, 46, 484, 1065, 1114, 1315
Hpy99I CGWCG 5 cut(s) 87, 118, 230, 281, 454
HpyAV CCTTC 8 cut(s) 67, 142, 176, 520, 766, 787, 1201, 1264
HpyCH4III ACNGT 1 cut(s) 1111
HpyCH4IV ACGT 1 cut(s) 449
HpyCH4V TGCA 3 cut(s) 686, 812, 944
HpyF10VI GCNNNNNNNGC 8 cut(s) 93, 207, 252, 263, 332, 344, 375, 680
HpyF3I CTNAG 3 cut(s) 675, 780, 1049
HpySE526I ACGT 1 cut(s) 449
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 6 cut(s) 376, 413, 649, 922, 1186, 1378
HspAI GCGC 4 cut(s) 159, 249, 255, 629
Ksp22I TGATCA 1 cut(s) 552
KspI CCGCGG 1 cut(s) 97
LmnI GCTCC 2 cut(s) 323, 1156
Lsp1109I GCAGC 2 cut(s) 168, 670
LweI GCATC 2 cut(s) 108, 378
MaeI CTAG 3 cut(s) 579, 747, 1097
MaeII ACGT 1 cut(s) 449
MaeIII GTNAC 8 cut(s) 398, 497, 704, 712, 1009, 1091, 1133, 1246
MboII GAAGA 8 cut(s) 448, 461, 802, 839, 1226, 1231, 1273, 1343
MflI RGATCY 5 cut(s) 4, 54, 438, 1045, 1263
MhlI GDGCHC 2 cut(s) 676, 895
MluCI AATT 3 cut(s) 121, 1167, 1326
MluI ACGCGT 1 cut(s) 279
MlyI GAGTC 1 cut(s) 473
MmeI TCCRAC 2 cut(s) 96, 328
MroXI GAANNNNTTC 1 cut(s) 1295
MslI CAYNNNNRTG 1 cut(s) 657
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 4 cut(s) 192, 315, 393, 426
MspR9I CCNGG 5 cut(s) 192, 598, 927, 1155, 1380
Mva1269I GAATGC 2 cut(s) 192, 1126
MvaI CCWGG 4 cut(s) 598, 927, 1155, 1380
MvnI CGCG 5 cut(s) 96, 113, 249, 255, 281
MwoI GCNNNNNNNGC 8 cut(s) 93, 207, 252, 263, 332, 344, 375, 680
NciI CCSGG 1 cut(s) 192
NcoI CCATGG 1 cut(s) 409
NlaIII CATG 6 cut(s) 376, 413, 649, 922, 1186, 1378
NlaIV GGNNCC 7 cut(s) 6, 48, 319, 744, 777, 1021, 1152
NmeAIII GCCGAG 3 cut(s) 132, 422, 570
NmuCI GTSAC 7 cut(s) 398, 704, 712, 1009, 1091, 1133, 1246
NspI RCATGY 1 cut(s) 1378
OliI CACNNNNGTG 1 cut(s) 657
PceI AGGCCT 2 cut(s) 530, 1054
PcsI WCGNNNNNNNCGW 6 cut(s) 66, 141, 213, 222, 231, 449
PctI GAATGC 2 cut(s) 192, 1126
PdmI GAANNNNTTC 1 cut(s) 1295
PfeI GAWTC 1 cut(s) 238
PflFI GACNNNGTC 1 cut(s) 710
PfoI TCCNGGA 1 cut(s) 1153
PkrI GCNGC 8 cut(s) 95, 98, 158, 212, 248, 337, 431, 685
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
PpuMI RGGWCCY 1 cut(s) 743
Psp5II RGGWCCY 1 cut(s) 743
Psp6I CCWGG 4 cut(s) 596, 925, 1153, 1378
PspGI CCWGG 4 cut(s) 596, 925, 1153, 1378
PspN4I GGNNCC 7 cut(s) 6, 48, 319, 744, 777, 1021, 1152
PspPI GGNCC 6 cut(s) 46, 376, 743, 776, 796, 869
PspPPI RGGWCCY 1 cut(s) 743
PsuI RGATCY 5 cut(s) 4, 54, 438, 1045, 1263
PsyI GACNNNGTC 1 cut(s) 710
RsaI GTAC 2 cut(s) 1174, 1406
RsaNI GTAC 2 cut(s) 1173, 1405
RseI CAYNNNNRTG 1 cut(s) 657
SacII CCGCGG 1 cut(s) 97
SatI GCNGC 8 cut(s) 94, 97, 157, 211, 247, 336, 430, 684
Sau96I GGNCC 6 cut(s) 46, 376, 743, 776, 796, 869
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 5 cut(s) 192, 598, 927, 1155, 1380
SduI GDGCHC 2 cut(s) 676, 895
SfaNI GCATC 2 cut(s) 108, 378
Sfr303I CCGCGG 1 cut(s) 97
SgrBI CCGCGG 1 cut(s) 97
SinI GGWCC 3 cut(s) 46, 743, 869
SmiMI CAYNNNNRTG 1 cut(s) 657
SmlI CTYRAG 5 cut(s) 260, 736, 908, 1202, 1337
SmoI CTYRAG 5 cut(s) 260, 736, 908, 1202, 1337
Sse9I AATT 3 cut(s) 121, 1167, 1326
SseBI AGGCCT 2 cut(s) 530, 1054
SspMI CTAG 3 cut(s) 579, 747, 1097
StuI AGGCCT 2 cut(s) 530, 1054
StyD4I CCNGG 5 cut(s) 190, 596, 925, 1153, 1378
StyI CCWWGG 6 cut(s) 409, 531, 578, 746, 973, 1146
TaaI ACNGT 1 cut(s) 1111
TaiI ACGT 1 cut(s) 452
TaqI TCGA 8 cut(s) 69, 102, 144, 225, 234, 276, 452, 462
TasI AATT 3 cut(s) 121, 1167, 1326
TatI WGTACW 1 cut(s) 1404
TauI GCSGC 6 cut(s) 96, 99, 213, 249, 338, 432
TfiI GAWTC 1 cut(s) 238
TscAI CASTG 2 cut(s) 664, 1147
TseFI GTSAC 7 cut(s) 398, 704, 712, 1009, 1091, 1133, 1246
TseI GCWGC 2 cut(s) 156, 683
Tsp45I GTSAC 7 cut(s) 398, 704, 712, 1009, 1091, 1133, 1246
TspDTI ATGAA 3 cut(s) 211, 1226, 1415
TspRI CASTG 2 cut(s) 664, 1147
Tth111I GACNNNGTC 1 cut(s) 710
VpaK11BI GGWCC 3 cut(s) 46, 743, 869
XapI RAATTY 1 cut(s) 121
XceI RCATGY 1 cut(s) 1378
XcmI CCANNNNNNNNNTGG 2 cut(s) 15, 1274
XmaJI CCTAGG 2 cut(s) 578, 746
XmnI GAANNNNTTC 1 cut(s) 1295
XspI CTAG 3 cut(s) 579, 747, 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.