Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010129

Physical Location & Seq

Genomic Coordinates Reverse (-)

9225859 .. 9228103

Gene Structure 2245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G16330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAGGTCTTTAGGTCTCTCTTTCTTCCAAGACTCTCCCATGGAAGAGAAGCTACGTTACGCCTGCGACTCTACCTCCGCCGCATCTGAAGGTTACGGTAGCCGTATGTTGCTTGGTGCTAAAGATGACGTCGTTTTGGATTGGAGAGATTACTTTGATCATCACACGTTTCCTCCCTCTCGTCGTAACCCTTCTCATTGGCCGATTCATCCTTCTGACTACAGACAAGTTGTTGGAGAATATGGTGATGAGATGAAGAAACTAGCTCAGATGCTATTAGGGCTAATCTCAGAGAGTTTGGGTCTTCCTTGTTCATCTATAGAAGAAGCTGTTGGTGAAATCTATCAGAACATTACTGTAACCTATTACCCTCCTTGTCCTCAGCCTGAGCTCACTCTTGGTCTTCAGTCTCATTCCGATTTTGGTGCCATTACTCTCTTGATTCAAGATGATGTTGAAGGTCTTCAGCTTTACAAGGATGCTCAATGGCTCACTGTTCCTCCTATCTCTGATGCTATTCTCATTCTTATTGCCGATCAAACCGAGATCATTACCAATGGAAGATACAAAAGTGCTCAACATAGAGCTGTGACTAATGCGAATCGGGCGCGGTTATCAGTCGCTACCTTTCATGATCCCTCCAAGACTGCAAGGATAGCACCAGTTTCTCAACTCTCCCCACCGTCTTACAAGGAAGTTGTGTATGGTCAATATGTTTCTTCCTGGTACTCTAAAGGTCCTGAGGGTAAACGAAACCTCGATGCTCTTCTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

258

Amino Acids

28.89

Weight (kDa)

5.36

Isoelectric Point (pI)

53.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	7 - 68	6e-06	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	118 - 213	3.9e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16330 AT4G16330
fragaria_vesca	FvH4_6g39151
malus_domestica	MD09G1144700.v1.1
prunus_persica	Prupe.3G183300_v2.0.a1 Prupe.3G183300_v2.0.a1 Prupe.3G183300_v2.0.a1 Prupe.3G183300_v2.0.a1
pyrus_communis	pycom09g06410
rosa_chinensis	RchiOBHm_Chr2g0152971
rosa_laevigata	RLG00000020661
rosa_multiflora	Rmu_sc0008143.1_g000002 Rmu_sc0011216.1_g000002 Rmu_ssc0000489.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095340
rosa_rugosa	Rorug02G0436600
rosa_samantha	Rh2AG498600 Rh2BG509800 Rh2CG484700 Rh2DG521400
rosa_wichuraiana	Rw2G040920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
AccB1I	GGYRCC	1 cut(s)	425
AccII	CGCG	1 cut(s)	610
AciI	CCGC	3 cut(s)	78, 81, 610
AclWI	GGATC	1 cut(s)	629
AcoI	YGGCCR	1 cut(s)	200
AcuI	CTGAAG	3 cut(s)	108, 389, 449
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	1 cut(s)	728
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	2 cut(s)	446, 458
AjnI	CCWGG	1 cut(s)	722
AjuI	GAANNNNNNNTTGG	2 cut(s)	315, 347
AluBI	AGCT	6 cut(s)	52, 266, 329, 391, 469, 587
AluI	AGCT	6 cut(s)	52, 266, 329, 391, 469, 587
Alw21I	GWGCWC	2 cut(s)	393, 577
Alw26I	GTCTC	2 cut(s)	20, 414
AlwI	GGATC	1 cut(s)	629
AoxI	GGCC	1 cut(s)	200
Asp700I	GAANNNNTTC	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	610
AspS9I	GGNCC	1 cut(s)	737
AsuHPI	GGTGA	2 cut(s)	257, 347
AvaII	GGWCC	1 cut(s)	737
AxyI	CCTNAGG	1 cut(s)	741
BaeI	ACNNNNGTAYC	2 cut(s)	556, 589
BanI	GGYRCC	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	393
BarI	GAAGNNNNNNTAC	4 cut(s)	36, 41, 68, 73
BbsI	GAAGAC	3 cut(s)	296, 395, 455
Bbv12I	GWGCWC	2 cut(s)	393, 577
BbvCI	CCTCAGC	1 cut(s)	381
BceAI	ACGGC	1 cut(s)	87
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BciT130I	CCWGG	1 cut(s)	724
BclI	TGATCA	1 cut(s)	157
BcoDI	GTCTC	2 cut(s)	20, 414
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	2 cut(s)	220, 318
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	724
Bme18I	GGWCC	1 cut(s)	737
BmgT120I	GGNCC	1 cut(s)	737
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	1 cut(s)	724
BmsI	GCATC	5 cut(s)	92, 261, 469, 502, 751
BpiI	GAAGAC	3 cut(s)	296, 395, 455
Bpu10I	CCTNAGC	2 cut(s)	381, 387
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	39
BsaXI	ACNNNNNCTCC	6 cut(s)	59, 89, 157, 187, 484, 514
Bse1I	ACTGG	1 cut(s)	662
Bse21I	CCTNAGG	1 cut(s)	741
BseBI	CCWGG	1 cut(s)	724
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	2 cut(s)	208, 484
BseMII	CTCAG	5 cut(s)	281, 303, 378, 395, 732
BseNI	ACTGG	1 cut(s)	662
Bsh1236I	CGCG	1 cut(s)	610
BshFI	GGCC	1 cut(s)	202
BshNI	GGYRCC	1 cut(s)	425
BsiHKAI	GWGCWC	2 cut(s)	393, 577
BsmAI	GTCTC	2 cut(s)	20, 414
BsnI	GGCC	1 cut(s)	202
Bso31I	GGTCTC	1 cut(s)	20
Bsp1286I	GDGCHC	2 cut(s)	393, 577
Bsp143I	GATC	4 cut(s)	157, 535, 546, 634
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	3 cut(s)	78, 81, 610
BspANI	GGCC	1 cut(s)	202
BspCNI	CTCAG	5 cut(s)	280, 302, 379, 394, 733
BspFNI	CGCG	1 cut(s)	610
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	1 cut(s)	427
BspPI	GGATC	1 cut(s)	629
BspQI	GCTCTTC	1 cut(s)	771
BspT107I	GGYRCC	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	662
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	4 cut(s)	157, 535, 546, 634
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	724
Bst4CI	ACNGT	4 cut(s)	98, 358, 496, 684
Bst6I	CTCTTC	2 cut(s)	39, 771
BstACI	GRCGYC	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	5 cut(s)	267, 289, 381, 387, 741
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	2 cut(s)	208, 484
BstFNI	CGCG	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	610
BstKTI	GATC	4 cut(s)	160, 538, 549, 637
BstMAI	GTCTC	2 cut(s)	20, 414
BstMBI	GATC	4 cut(s)	157, 535, 546, 634
BstMWI	GCNNNNNNNGC	3 cut(s)	280, 605, 656
BstNI	CCWGG	1 cut(s)	724
BstSCI	CCNGG	1 cut(s)	722
BstSFI	CTRYAG	2 cut(s)	220, 318
BstUI	CGCG	1 cut(s)	610
BstV2I	GAAGAC	3 cut(s)	296, 395, 455
Bsu36I	CCTNAGG	1 cut(s)	741
BsuRI	GGCC	1 cut(s)	202
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	208, 484
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	1 cut(s)	64
CciI	TCATGA	1 cut(s)	631
CfoI	GCGC	1 cut(s)	610
Cfr13I	GGNCC	1 cut(s)	737
Csp6I	GTAC	1 cut(s)	727
CviAII	CATG	2 cut(s)	40, 632
CviQI	GTAC	1 cut(s)	727
DdeI	CTNAG	5 cut(s)	267, 289, 381, 387, 741
DpnI	GATC	4 cut(s)	159, 537, 548, 636
DpnII	GATC	4 cut(s)	157, 535, 546, 634
EaeI	YGGCCR	1 cut(s)	200
Eam1104I	CTCTTC	2 cut(s)	39, 771
EarI	CTCTTC	2 cut(s)	39, 771
EciI	GGCGGA	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	737
Eco53kI	GAGCTC	1 cut(s)	391
Eco57I	CTGAAG	3 cut(s)	108, 389, 449
Eco81I	CCTNAGG	1 cut(s)	741
EcoICRI	GAGCTC	1 cut(s)	391
EcoO109I	RGGNCCY	1 cut(s)	737
EcoRII	CCWGG	1 cut(s)	722
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	2 cut(s)	43, 635
FaiI	YATR	8 cut(s)	41, 107, 243, 320, 582, 633, 705, 714
FatI	CATG	2 cut(s)	39, 631
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	2 cut(s)	195, 491
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	1 cut(s)	609
GluI	GCNGC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	202
HhaI	GCGC	1 cut(s)	610
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	43, 635
Hin6I	GCGC	1 cut(s)	608
HinP1I	GCGC	1 cut(s)	608
HinfI	GANTC	5 cut(s)	32, 68, 205, 442, 601
HphI	GGTGA	2 cut(s)	257, 347
Hpy166II	GTNNAC	1 cut(s)	749
Hpy188I	TCNGA	7 cut(s)	88, 217, 270, 292, 348, 418, 511
Hpy188III	TCNNGA	4 cut(s)	439, 446, 632, 740
Hpy8I	GTNNAC	1 cut(s)	749
Hpy99I	CGWCG	2 cut(s)	134, 186
HpyAV	CCTTC	4 cut(s)	83, 201, 222, 452
HpyCH4III	ACNGT	4 cut(s)	98, 358, 496, 684
HpyCH4IV	ACGT	3 cut(s)	55, 129, 167
HpyCH4V	TGCA	1 cut(s)	650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	280, 605, 656
HpyF3I	CTNAG	5 cut(s)	267, 289, 381, 387, 741
HpySE526I	ACGT	3 cut(s)	55, 129, 167
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	43, 635
HspAI	GCGC	1 cut(s)	608
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	4 cut(s)	157, 535, 546, 634
LguI	GCTCTTC	1 cut(s)	771
LpnPI	CCDG	6 cut(s)	76, 399, 675, 709, 736, 753
LweI	GCATC	5 cut(s)	92, 261, 469, 502, 751
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	3 cut(s)	55, 129, 167
MaeIII	GTNAC	5 cut(s)	56, 92, 185, 358, 589
MalI	GATC	4 cut(s)	159, 537, 548, 636
MboI	GATC	4 cut(s)	157, 535, 546, 634
MhlI	GDGCHC	2 cut(s)	393, 577
MlyI	GAGTC	2 cut(s)	26, 62
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	9 cut(s)	85, 183, 187, 381, 390, 510, 649, 736, 767
MroXI	GAANNNNTTC	1 cut(s)	462
MspR9I	CCNGG	1 cut(s)	724
MvaI	CCWGG	1 cut(s)	724
MvnI	CGCG	1 cut(s)	610
MwoI	GCNNNNNNNGC	3 cut(s)	280, 605, 656
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	4 cut(s)	157, 535, 546, 634
NlaIII	CATG	2 cut(s)	43, 635
NlaIV	GGNNCC	1 cut(s)	427
NmuCI	GTSAC	1 cut(s)	589
PagI	TCATGA	1 cut(s)	631
PciSI	GCTCTTC	1 cut(s)	771
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	3 cut(s)	205, 442, 601
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	2 cut(s)	26, 62
PpsI	GAGTC	2 cut(s)	26, 62
PpuMI	RGGWCCY	1 cut(s)	737
Psp124BI	GAGCTC	1 cut(s)	393
Psp5II	RGGWCCY	1 cut(s)	737
Psp6I	CCWGG	1 cut(s)	722
PspGI	CCWGG	1 cut(s)	722
PspN4I	GGNNCC	1 cut(s)	427
PspPI	GGNCC	1 cut(s)	737
PspPPI	RGGWCCY	1 cut(s)	737
RsaI	GTAC	1 cut(s)	728
RsaNI	GTAC	1 cut(s)	727
SacI	GAGCTC	1 cut(s)	393
SapI	GCTCTTC	1 cut(s)	771
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	4 cut(s)	157, 535, 546, 634
Sau96I	GGNCC	1 cut(s)	737
SchI	GAGTC	2 cut(s)	26, 62
ScrFI	CCNGG	1 cut(s)	724
SduI	GDGCHC	2 cut(s)	393, 577
SfaNI	GCATC	5 cut(s)	92, 261, 469, 502, 751
SfcI	CTRYAG	2 cut(s)	220, 318
SinI	GGWCC	1 cut(s)	737
SsiI	CCGC	3 cut(s)	78, 81, 610
SspMI	CTAG	1 cut(s)	263
SstI	GAGCTC	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	722
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	4 cut(s)	98, 358, 496, 684
TaiI	ACGT	3 cut(s)	58, 132, 170
TaqI	TCGA	1 cut(s)	759
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	3 cut(s)	205, 442, 601
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	589
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	4 cut(s)	197, 269, 303, 620
TspRI	CASTG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	737
XmnI	GAANNNNTTC	1 cut(s)	462
XspI	CTAG	1 cut(s)	263
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.