Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000489.1

Orthogroup ID

OG0010129

Physical Location & Seq

Genomic Coordinates Forward (+)

112 .. 2959

Gene Structure 2848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000489.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

atggaagtagcctcggaacccaccagagttcaaagcctagcccaagctggtctcagccaagttccaccgcagtacattcaacctccccagaaccgacccaaccacccttcatcttcctccaacgttccctcaatcagcctattcggactcgacccgacccgccgcgactcggtccgggcctccatcgccgaagcctgcagggactggggcgccttccacgtcaccgaccacggcgtccccgccactctagtccacgacatcaagcgcgtgggtcttactttcttcaacgactgcccagtcccggagaagctccgctacgcctgcgatcccagctccgccgcgtcggagggctacggcagccggatgctggagaaggacgacaccgttttggactggagagactacttcgaccaccacactctccccctcacgcgccggaaccccacgcgctggccggatttcccgccggattaccgccgggtggttacggaatacagcgatcgaatcgctttgctggcgagggagctgctggggctgatttccgagagcctagggcttaaaacgcagcgtttagaggaggcggttgggggtttttaccagaacattacgattagctattacccgccgtgtcctcagccggagctgacattgggcctgcaggcccattcggattttggggccattacgctgctggtccaagacgaggttggtgggcttgaggtgctgaaagacaatgactgggtgcctgtgaagcctttgggtggtgatgctgttgttgttctcctagctgatcaaactgagatcatgactaacggacagtacaagagttctcaacatagagctataaccaactccaatcgtccacggctgtcagtggctacttttcatgatcctgccaagacagtgaaagtatcccccgcttcagagcttatcagtcaatccactcctcccctctaccgggaagttgtttacggagattatgtgtcatcatggtacacaaagggtccagaaggaacctgccaagacagtgaaagtatcccctgcttcagagcttatcagtcaatccactcctcccctctaccgggaagttgtttacggagattatgtgtcatcatggtacacaaagggtccagaaggaaaacggaatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

383

Amino Acids

42.64

Weight (kDa)

6.13

Isoelectric Point (pI)

57.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16330 AT4G16330
fragaria_vesca	FvH4_6g39151
malus_domestica	MD09G1144700.v1.1
prunus_persica	Prupe.3G183300_v2.0.a1 Prupe.3G183300_v2.0.a1 Prupe.3G183300_v2.0.a1 Prupe.3G183300_v2.0.a1
pyrus_communis	pycom09g06410
rosa_chinensis	RchiOBHm_Chr2g0152971
rosa_laevigata	RLG00000020661
rosa_multiflora	Rmu_sc0008143.1_g000002 Rmu_sc0011216.1_g000002 Rmu_ssc0000489.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095340
rosa_rugosa	Rorug02G0436600
rosa_samantha	Rh2AG498600 Rh2BG509800 Rh2CG484700 Rh2DG521400
rosa_wichuraiana	Rw2G040920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	233, 296
Acc36I	ACCTGC	1 cut(s)	1025
AccB1I	GGYRCC	2 cut(s)	209, 742
AccB7I	CCANNNNNTGG	1 cut(s)	450
AccII	CGCG	5 cut(s)	165, 267, 341, 433, 448
AclI	AACGTT	1 cut(s)	123
AclWI	GGATC	2 cut(s)	320, 884
AcoI	YGGCCR	1 cut(s)	452
AcuI	CTGAAG	2 cut(s)	906, 1030
AcyI	GRCGYC	2 cut(s)	210, 234
AfaI	GTAC	4 cut(s)	74, 821, 995, 1119
AgsI	TTSAA	3 cut(s)	32, 80, 286
AjiI	CACGTC	1 cut(s)	220
Alw26I	GTCTC	2 cut(s)	56, 393
AlwI	GGATC	2 cut(s)	320, 884
AlwNI	CAGNNNCTG	1 cut(s)	204
AoxI	GGCC	5 cut(s)	177, 452, 652, 660, 678
ApeKI	GCWGC	4 cut(s)	357, 526, 565, 688
AspA2I	CCTAGG	1 cut(s)	550
AspLEI	GCGC	4 cut(s)	212, 267, 435, 450
AspS9I	GGNCC	8 cut(s)	172, 177, 652, 661, 678, 694, 1004, 1128
AsuC2I	CCSGG	5 cut(s)	176, 302, 479, 959, 1083
AsuHPI	GGTGA	2 cut(s)	214, 776
AvaII	GGWCC	4 cut(s)	172, 694, 1004, 1128
AvrII	CCTAGG	1 cut(s)	550
BanI	GGYRCC	2 cut(s)	209, 742
BarI	GAAGNNNNNNTAC	2 cut(s)	299, 331
BbvCI	CCTCAGC	1 cut(s)	633
BbvI	GCAGC	4 cut(s)	369, 513, 577, 675
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	4 cut(s)	247, 370, 610, 881
BcgI	CGANNNNNNTGC	2 cut(s)	508, 542
BciVI	GTATCC	2 cut(s)	922, 1046
BclI	TGATCA	1 cut(s)	790
BcnI	CCSGG	5 cut(s)	176, 302, 479, 959, 1083
BcoDI	GTCTC	2 cut(s)	56, 393
BfaI	CTAG	4 cut(s)	38, 248, 551, 785
BfmI	CTRYAG	2 cut(s)	196, 656
BfoI	RGCGCY	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	1025
BfuI	GTATCC	2 cut(s)	922, 1046
BisI	GCNGC	6 cut(s)	163, 339, 358, 527, 566, 689
BlnI	CCTAGG	1 cut(s)	550
BlsI	GCNGC	6 cut(s)	164, 340, 359, 528, 567, 690
Bme1390I	CCNGG	5 cut(s)	176, 302, 479, 959, 1083
Bme18I	GGWCC	4 cut(s)	172, 694, 1004, 1128
BmgBI	CACGTC	1 cut(s)	220
BmgT120I	GGNCC	8 cut(s)	172, 177, 652, 661, 678, 694, 1004, 1128
BmiI	GGNNCC	8 cut(s)	18, 211, 440, 679, 744, 1005, 1015, 1129
BmrFI	CCNGG	5 cut(s)	176, 302, 479, 959, 1083
BmrI	ACTGGG	3 cut(s)	214, 290, 748
BmsI	GCATC	2 cut(s)	354, 757
BmuI	ACTGGG	3 cut(s)	214, 290, 748
BpmI	CTGGAG	2 cut(s)	389, 415
Bpu10I	CCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	737
BpuMI	CCSGG	5 cut(s)	176, 302, 479, 959, 1083
BsaHI	GRCGYC	2 cut(s)	210, 234
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	4 cut(s)	12, 229, 550, 863
BsaXI	ACNNNNNCTCC	4 cut(s)	966, 996, 1090, 1120
Bse1I	ACTGG	4 cut(s)	209, 296, 398, 743
BseDI	CCNNGG	4 cut(s)	12, 229, 550, 863
BseGI	GGATG	1 cut(s)	369
BseMII	CTCAG	3 cut(s)	67, 647, 789
BseNI	ACTGG	4 cut(s)	209, 296, 398, 743
BseRI	GAGGAG	3 cut(s)	590, 936, 1060
BseXI	GCAGC	4 cut(s)	369, 513, 577, 675
BseYI	CCCAGC	2 cut(s)	329, 529
Bsh1236I	CGCG	5 cut(s)	165, 267, 341, 433, 448
Bsh1285I	CGRYCG	1 cut(s)	502
BshFI	GGCC	5 cut(s)	179, 454, 654, 662, 680
BshNI	GGYRCC	2 cut(s)	209, 742
BsiEI	CGRYCG	1 cut(s)	502
BslFI	GGGAC	3 cut(s)	215, 221, 284
BsmAI	GTCTC	2 cut(s)	56, 393
BsmFI	GGGAC	3 cut(s)	215, 221, 284
BsnI	GGCC	5 cut(s)	179, 454, 654, 662, 680
Bso31I	GGTCTC	1 cut(s)	56
Bsp143I	GATC	5 cut(s)	325, 499, 790, 801, 889
BspANI	GGCC	5 cut(s)	179, 454, 654, 662, 680
BspCNI	CTCAG	3 cut(s)	66, 646, 790
BspFNI	CGCG	5 cut(s)	165, 267, 341, 433, 448
BspHI	TCATGA	2 cut(s)	804, 886
BspLI	GGNNCC	8 cut(s)	18, 211, 440, 679, 744, 1005, 1015, 1129
BspMAI	CTGCAG	2 cut(s)	200, 660
BspMI	ACCTGC	1 cut(s)	1025
BspPI	GGATC	2 cut(s)	320, 884
BspT107I	GGYRCC	2 cut(s)	209, 742
BspTNI	GGTCTC	1 cut(s)	56
BsrI	ACTGG	4 cut(s)	209, 296, 398, 743
BssECI	CCNNGG	4 cut(s)	12, 229, 550, 863
BssMI	GATC	5 cut(s)	325, 499, 790, 801, 889
BssNI	GRCGYC	2 cut(s)	210, 234
BssT1I	CCWWGG	1 cut(s)	550
Bst4CI	ACNGT	4 cut(s)	385, 819, 904, 1028
BstACI	GRCGYC	2 cut(s)	210, 234
BstC8I	GCNNGC	6 cut(s)	196, 322, 452, 516, 656, 660
BstDEI	CTNAG	3 cut(s)	53, 633, 798
BstDSI	CCRYGG	2 cut(s)	229, 863
BstF5I	GGATG	1 cut(s)	369
BstFNI	CGCG	5 cut(s)	165, 267, 341, 433, 448
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	4 cut(s)	212, 267, 435, 450
BstKTI	GATC	5 cut(s)	328, 502, 793, 804, 892
BstMAI	GTCTC	2 cut(s)	56, 393
BstMBI	GATC	5 cut(s)	325, 499, 790, 801, 889
BstMCI	CGRYCG	1 cut(s)	502
BstMWI	GCNNNNNNNGC	9 cut(s)	185, 321, 330, 357, 515, 532, 562, 721, 751
BstSCI	CCNGG	5 cut(s)	174, 300, 477, 957, 1081
BstSFI	CTRYAG	2 cut(s)	196, 656
BstUI	CGCG	5 cut(s)	165, 267, 341, 433, 448
BstV1I	GCAGC	4 cut(s)	369, 513, 577, 675
BsuI	GTATCC	2 cut(s)	922, 1046
BsuRI	GGCC	5 cut(s)	179, 454, 654, 662, 680
BtgI	CCRYGG	2 cut(s)	229, 863
BtgZI	GCGATG	1 cut(s)	169
BtrI	CACGTC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	369
BtsIMutI	CAGTG	3 cut(s)	879, 909, 1033
BveI	ACCTGC	1 cut(s)	1025
Cac8I	GCNNGC	6 cut(s)	196, 322, 452, 516, 656, 660
CaiI	CAGNNNCTG	1 cut(s)	204
CciI	TCATGA	2 cut(s)	804, 886
CfoI	GCGC	4 cut(s)	212, 267, 435, 450
Cfr13I	GGNCC	8 cut(s)	172, 177, 652, 661, 678, 694, 1004, 1128
CpoI	CGGWCCG	1 cut(s)	172
CseI	GACGC	2 cut(s)	223, 330
Csp6I	GTAC	4 cut(s)	73, 820, 994, 1118
CspI	CGGWCCG	1 cut(s)	172
CviAII	CATG	4 cut(s)	805, 887, 990, 1114
CviQI	GTAC	4 cut(s)	73, 820, 994, 1118
DdeI	CTNAG	3 cut(s)	53, 633, 798
DinI	GGCGCC	1 cut(s)	211
DpnI	GATC	5 cut(s)	327, 501, 792, 803, 891
DpnII	GATC	5 cut(s)	325, 499, 790, 801, 889
DrdI	GACNNNNNNGTC	2 cut(s)	233, 296
DseDI	GACNNNNNNGTC	2 cut(s)	233, 296
EaeI	YGGCCR	1 cut(s)	452
EciI	GGCGGA	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	550
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	4 cut(s)	172, 694, 1004, 1128
Eco57I	CTGAAG	2 cut(s)	906, 1030
EcoT14I	CCWWGG	1 cut(s)	550
EgeI	GGCGCC	1 cut(s)	211
EheI	GGCGCC	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	550
FaeI	CATG	4 cut(s)	808, 890, 993, 1117
FaiI	YATR	8 cut(s)	806, 837, 845, 888, 981, 991, 1105, 1115
FaqI	GGGAC	3 cut(s)	215, 221, 284
FatI	CATG	4 cut(s)	804, 886, 989, 1113
FauI	CCCGC	5 cut(s)	167, 247, 471, 630, 925
FbaI	TGATCA	1 cut(s)	790
Fnu4HI	GCNGC	6 cut(s)	163, 339, 358, 527, 566, 689
FokI	GGATG	1 cut(s)	376
Fsp4HI	GCNGC	6 cut(s)	163, 339, 358, 527, 566, 689
FspBI	CTAG	4 cut(s)	38, 248, 551, 785
GlaI	GCGC	4 cut(s)	211, 266, 434, 449
GluI	GCNGC	6 cut(s)	163, 339, 358, 527, 566, 689
GsaI	CCCAGC	2 cut(s)	333, 533
GsuI	CTGGAG	2 cut(s)	389, 415
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	5 cut(s)	179, 454, 654, 662, 680
HgaI	GACGC	2 cut(s)	223, 330
HhaI	GCGC	4 cut(s)	212, 267, 435, 450
Hin1I	GRCGYC	2 cut(s)	210, 234
Hin1II	CATG	4 cut(s)	808, 890, 993, 1117
Hin6I	GCGC	4 cut(s)	210, 265, 433, 448
HinP1I	GCGC	4 cut(s)	210, 265, 433, 448
HinfI	GANTC	3 cut(s)	147, 167, 504
HphI	GGTGA	2 cut(s)	214, 776
Hpy166II	GTNNAC	6 cut(s)	253, 863, 970, 996, 1094, 1120
Hpy188I	TCNGA	7 cut(s)	16, 146, 346, 544, 670, 925, 1049
Hpy188III	TCNNGA	4 cut(s)	805, 887, 1007, 1131
Hpy8I	GTNNAC	6 cut(s)	253, 863, 970, 996, 1094, 1120
Hpy99I	CGWCG	1 cut(s)	346
HpyAV	CCTTC	5 cut(s)	117, 223, 367, 1004, 1128
HpyCH4III	ACNGT	4 cut(s)	385, 819, 904, 1028
HpyCH4IV	ACGT	2 cut(s)	123, 219
HpyCH4V	TGCA	2 cut(s)	198, 658
HpyF10VI	GCNNNNNNNGC	9 cut(s)	185, 321, 330, 357, 515, 532, 562, 721, 751
HpyF3I	CTNAG	3 cut(s)	53, 633, 798
HpySE526I	ACGT	2 cut(s)	123, 219
Hsp92I	GRCGYC	2 cut(s)	210, 234
Hsp92II	CATG	4 cut(s)	808, 890, 993, 1117
HspAI	GCGC	4 cut(s)	210, 265, 433, 448
KasI	GGCGCC	1 cut(s)	209
Ksp22I	TGATCA	1 cut(s)	790
Kzo9I	GATC	5 cut(s)	325, 499, 790, 801, 889
LmnI	GCTCC	4 cut(s)	315, 338, 523, 640
Lsp1109I	GCAGC	4 cut(s)	369, 513, 577, 675
LweI	GCATC	2 cut(s)	354, 757
MaeI	CTAG	4 cut(s)	38, 248, 551, 785
MaeII	ACGT	2 cut(s)	123, 219
MaeIII	GTNAC	2 cut(s)	220, 484
MalI	GATC	5 cut(s)	327, 501, 792, 803, 891
MboI	GATC	5 cut(s)	325, 499, 790, 801, 889
MboII	GAAGA	2 cut(s)	105, 274
Mly113I	GGCGCC	1 cut(s)	210
MlyI	GAGTC	2 cut(s)	141, 161
MmeI	TCCRAC	2 cut(s)	144, 324
MseI	TTAA	1 cut(s)	558
MspR9I	CCNGG	5 cut(s)	176, 302, 479, 959, 1083
MvnI	CGCG	5 cut(s)	165, 267, 341, 433, 448
MwoI	GCNNNNNNNGC	9 cut(s)	185, 321, 330, 357, 515, 532, 562, 721, 751
NarI	GGCGCC	1 cut(s)	210
NciI	CCSGG	5 cut(s)	176, 302, 479, 959, 1083
NdeII	GATC	5 cut(s)	325, 499, 790, 801, 889
NlaIII	CATG	4 cut(s)	808, 890, 993, 1117
NlaIV	GGNNCC	8 cut(s)	18, 211, 440, 679, 744, 1005, 1015, 1129
NmuCI	GTSAC	1 cut(s)	220
PagI	TCATGA	2 cut(s)	804, 886
PfeI	GAWTC	1 cut(s)	504
PflFI	GACNNNGTC	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	450
PfoI	TCCNGGA	1 cut(s)	300
PkrI	GCNGC	6 cut(s)	164, 340, 359, 528, 567, 690
Ple19I	CGATCG	1 cut(s)	502
PleI	GAGTC	2 cut(s)	141, 161
PluTI	GGCGCC	1 cut(s)	213
PpsI	GAGTC	2 cut(s)	141, 161
Psp1406I	AACGTT	1 cut(s)	123
PspFI	CCCAGC	2 cut(s)	329, 529
PspN4I	GGNNCC	8 cut(s)	18, 211, 440, 679, 744, 1005, 1015, 1129
PspPI	GGNCC	8 cut(s)	172, 177, 652, 661, 678, 694, 1004, 1128
PstI	CTGCAG	2 cut(s)	200, 660
PstNI	CAGNNNCTG	1 cut(s)	204
PsyI	GACNNNGTC	1 cut(s)	170
PvuI	CGATCG	1 cut(s)	502
RsaI	GTAC	4 cut(s)	74, 821, 995, 1119
RsaNI	GTAC	4 cut(s)	73, 820, 994, 1118
Rsr2I	CGGWCCG	1 cut(s)	172
RsrII	CGGWCCG	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	6 cut(s)	163, 339, 358, 527, 566, 689
Sau3AI	GATC	5 cut(s)	325, 499, 790, 801, 889
Sau96I	GGNCC	8 cut(s)	172, 177, 652, 661, 678, 694, 1004, 1128
SbfI	CCTGCAGG	2 cut(s)	200, 660
SchI	GAGTC	2 cut(s)	141, 161
ScrFI	CCNGG	5 cut(s)	176, 302, 479, 959, 1083
SdaI	CCTGCAGG	2 cut(s)	200, 660
SfaNI	GCATC	2 cut(s)	354, 757
SfcI	CTRYAG	2 cut(s)	196, 656
SfoI	GGCGCC	1 cut(s)	211
SinI	GGWCC	4 cut(s)	172, 694, 1004, 1128
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse8387I	CCTGCAGG	2 cut(s)	200, 660
SspDI	GGCGCC	1 cut(s)	209
SspI	AATATT	1 cut(s)	1148
SspMI	CTAG	4 cut(s)	38, 248, 551, 785
StyD4I	CCNGG	5 cut(s)	174, 300, 477, 957, 1081
StyI	CCWWGG	1 cut(s)	550
TaaI	ACNGT	4 cut(s)	385, 819, 904, 1028
TaiI	ACGT	2 cut(s)	126, 222
TaqI	TCGA	3 cut(s)	150, 408, 502
TaqII	GACCGA	1 cut(s)	160
TatI	WGTACW	2 cut(s)	72, 819
TauI	GCSGC	2 cut(s)	165, 341
TfiI	GAWTC	1 cut(s)	504
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	3 cut(s)	879, 909, 1033
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	4 cut(s)	357, 526, 565, 688
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	99, 875
TspGWI	ACGGA	4 cut(s)	503, 828, 987, 1111
TspRI	CASTG	3 cut(s)	879, 909, 1033
Tth111I	GACNNNGTC	1 cut(s)	170
Van91I	CCANNNNNTGG	1 cut(s)	450
VpaK11BI	GGWCC	4 cut(s)	172, 694, 1004, 1128
XcmI	CCANNNNNNNNNTGG	3 cut(s)	671, 688, 704
XmaJI	CCTAGG	1 cut(s)	550
XspI	CTAG	4 cut(s)	38, 248, 551, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.