Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010129

Physical Location & Seq

Genomic Coordinates Forward (+)

55780239 .. 55782367

Gene Structure 2129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0436600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGAACTTGAGAGCCGCCGAGGATGAATCGGCGAAAAAAGAGATTCATATCCCGGCCGAAATCGACTGGGAAATGCTTGATAAATCCAAGTTCTTTTTCCTCGGAGCGGCGCTCTTTTCCGGCGTATCGGCGACTCTCTACCCTGTCGTGGTTTTGAAAACCAGGCAACAAGTATCTCAATCTCAGCTCTCGTGTATCAAGACGGCGTTTTCGATCGTCAGGCATGAAGGATTTCGGGCATTGTATAGAGGCTTTGGGACTTCTTTGATGGGTACAATACCTGCCCGGGCGCTGTACATGGCGGCGCTTGAGATCACCAAGAGTAATGTGGGCACTGCCACCGTTAGGTTAGGGTTTTCGGAGCCGTCCGCTGCCGCAATTGCCAATGCGGTTGCAGGGTTGAGTGCTGCGATGGCGGCTCAGCTTGTGTGGACTCCAACTGATGTTGTGAGTCAGAGACTGATGGTGCAAGGCGGTGTGAATCCGAATGCCAAGTTTCCTAAAGCGTCCTCTTGTAAATATGTTAATGGGTATGATGCTTTCAGGAAAATTCTTCGGAGTGATGGGCCGAGGGGGTTGTATAGAGGGTTTGGGATTTCGATTTTGACATATGCACCATCCAATGCGGTTTGGTGGGCATCATACTCTGTTGCTCAGAGGATGGTTTGGAATGGAGTTGGGTGTTATTGTAGCCAGACGAATGAGAATGGGGTTAATGCGTATAGACCTGATTCGAAGACAATAATGGCAGTTCAGGGAGCCAGTGCAGCCATGGCGGGTGGCATGTCAGCTTTGATCACAACGCCACTCGACACGGTCAAGACGAGGCTGCAAGTTCTGGATGGGGATGACAATGGGCGGCGCGGACCAAGCATTGGGCAGACTGTTCGGAATTTGGTTAAAGAAGGCGGGTGGATGGCTTGTTACAGAGGATTGGGGCCAAGATGGGCTTCAATGTCGATTTCTGCAACCACCATGATCACCACCTATGAGTTTCTCAAACGGCTCTCCACTAAGAATCAAGAGGTTTTTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

345

Amino Acids

37.35

Weight (kDa)

9.66

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	37 - 110	4.1e-13	Mitochondrial carrier protein
Mito_carr	PF00153	126 - 223	2.7e-20	Mitochondrial carrier protein
Mito_carr	PF00153	252 - 339	4.4e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16330 AT4G16330
fragaria_vesca	FvH4_6g39151
malus_domestica	MD09G1144700.v1.1
prunus_persica	Prupe.3G183300_v2.0.a1 Prupe.3G183300_v2.0.a1 Prupe.3G183300_v2.0.a1 Prupe.3G183300_v2.0.a1
pyrus_communis	pycom09g06410
rosa_chinensis	RchiOBHm_Chr2g0152971
rosa_laevigata	RLG00000020661
rosa_multiflora	Rmu_sc0008143.1_g000002 Rmu_sc0011216.1_g000002 Rmu_ssc0000489.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095340
rosa_rugosa	Rorug02G0436600
rosa_samantha	Rh2AG498600 Rh2BG509800 Rh2CG484700 Rh2DG521400
rosa_wichuraiana	Rw2G040920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
AccB7I	CCANNNNNTGG	1 cut(s)	875
AccBSI	CCGCTC	1 cut(s)	107
AccII	CGCG	1 cut(s)	864
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	2 cut(s)	549, 892
AfaI	GTAC	2 cut(s)	274, 296
AfiI	CCNNNNNNNGG	4 cut(s)	106, 148, 345, 875
AgsI	TTSAA	2 cut(s)	157, 954
AjnI	CCWGG	1 cut(s)	161
AjuI	GAANNNNNNNTTGG	4 cut(s)	80, 112, 934, 966
AluBI	AGCT	3 cut(s)	187, 424, 791
AluI	AGCT	3 cut(s)	187, 424, 791
Alw26I	GTCTC	1 cut(s)	451
AlwNI	CAGNNNCTG	1 cut(s)	460
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	3 cut(s)	54, 566, 938
ApeKI	GCWGC	4 cut(s)	371, 407, 767, 829
ApoI	RAATTY	2 cut(s)	549, 892
ArsI	GACNNNNNNTTYG	2 cut(s)	193, 225
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	4 cut(s)	112, 292, 307, 864
AspS9I	GGNCC	3 cut(s)	566, 866, 938
AsuC2I	CCSGG	3 cut(s)	53, 286, 287
AsuHPI	GGTGA	2 cut(s)	307, 973
AsuII	TTCGAA	1 cut(s)	734
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	866
BaeGI	GKGCMC	1 cut(s)	335
BauI	CACGAG	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	743
BbvI	GCAGC	4 cut(s)	358, 394, 779, 816
BccI	CCATC	9 cut(s)	262, 406, 457, 557, 625, 655, 836, 910, 939
BceAI	ACGGC	3 cut(s)	219, 349, 1019
BcgI	CGANNNNNNTGC	2 cut(s)	869, 903
BciT130I	CCWGG	1 cut(s)	163
BclI	TGATCA	2 cut(s)	795, 978
BcnI	CCSGG	3 cut(s)	53, 286, 287
BcoDI	GTCTC	1 cut(s)	451
BfoI	RGCGCY	3 cut(s)	113, 293, 308
BfuAI	ACCTGC	1 cut(s)	289
BlpI	GCTNAGC	1 cut(s)	420
Bme1390I	CCNGG	4 cut(s)	53, 163, 286, 287
Bme18I	GGWCC	1 cut(s)	866
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	3 cut(s)	566, 866, 938
BmiI	GGNNCC	3 cut(s)	363, 760, 939
BmrFI	CCNGG	4 cut(s)	53, 163, 286, 287
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	2 cut(s)	526, 647
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	743
BplI	GAGNNNNNCTC	2 cut(s)	96, 128
Bpu1102I	GCTNAGC	1 cut(s)	420
Bpu14I	TTCGAA	1 cut(s)	734
BpuEI	CTTGAG	2 cut(s)	28, 329
BpuMI	CCSGG	3 cut(s)	53, 286, 287
BsaBI	GATNNNNATC	1 cut(s)	47
BsaJI	CCNNGG	5 cut(s)	18, 100, 285, 569, 771
Bsc4I	CCNNNNNNNGG	4 cut(s)	106, 148, 345, 875
Bse1I	ACTGG	2 cut(s)	71, 762
Bse8I	GATNNNNATC	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	5 cut(s)	18, 100, 285, 569, 771
BseGI	GGATG	6 cut(s)	28, 617, 666, 847, 853, 921
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	4 cut(s)	106, 148, 345, 875
BseMII	CTCAG	3 cut(s)	197, 434, 668
BseNI	ACTGG	2 cut(s)	71, 762
BseSI	GKGCMC	1 cut(s)	335
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	4 cut(s)	358, 394, 779, 816
BsgI	GTGCAG	1 cut(s)	786
Bsh1236I	CGCG	1 cut(s)	864
Bsh1285I	CGRYCG	2 cut(s)	57, 216
BshFI	GGCC	3 cut(s)	56, 568, 940
BsiEI	CGRYCG	2 cut(s)	57, 216
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	3 cut(s)	53, 120, 286
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	4 cut(s)	106, 148, 345, 875
BsmAI	GTCTC	1 cut(s)	451
BsmFI	GGGAC	1 cut(s)	271
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	3 cut(s)	56, 568, 940
BsoBI	CYCGRG	1 cut(s)	285
Bsp119I	TTCGAA	1 cut(s)	734
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp1407I	TGTACA	1 cut(s)	294
Bsp143I	GATC	4 cut(s)	213, 312, 795, 978
Bsp1720I	GCTNAGC	1 cut(s)	420
Bsp19I	CCATGG	1 cut(s)	771
BspANI	GGCC	3 cut(s)	56, 568, 940
BspCNI	CTCAG	3 cut(s)	196, 433, 667
BspFNI	CGCG	1 cut(s)	864
BspLI	GGNNCC	3 cut(s)	363, 760, 939
BspMI	ACCTGC	1 cut(s)	289
BspT104I	TTCGAA	1 cut(s)	734
BsrBI	CCGCTC	1 cut(s)	107
BsrGI	TGTACA	1 cut(s)	294
BsrI	ACTGG	2 cut(s)	71, 762
BssECI	CCNNGG	5 cut(s)	18, 100, 285, 569, 771
BssMI	GATC	4 cut(s)	213, 312, 795, 978
BssSI	CACGAG	1 cut(s)	190
BssT1I	CCWWGG	1 cut(s)	771
Bst2BI	CACGAG	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	3 cut(s)	343, 817, 886
BstAUI	TGTACA	1 cut(s)	294
BstBI	TTCGAA	1 cut(s)	734
BstDEI	CTNAG	4 cut(s)	183, 420, 654, 1014
BstDSI	CCRYGG	1 cut(s)	771
BstF5I	GGATG	6 cut(s)	28, 617, 666, 847, 853, 921
BstFNI	CGCG	1 cut(s)	864
BstH2I	RGCGCY	3 cut(s)	113, 293, 308
BstHHI	GCGC	4 cut(s)	112, 292, 307, 864
BstKTI	GATC	4 cut(s)	216, 315, 798, 981
BstMAI	GTCTC	1 cut(s)	451
BstMBI	GATC	4 cut(s)	213, 312, 795, 978
BstMCI	CGRYCG	2 cut(s)	57, 216
BstMWI	GCNNNNNNNGC	6 cut(s)	380, 413, 416, 767, 773, 870
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	787
BstSCI	CCNGG	4 cut(s)	51, 161, 284, 285
BstSLI	GKGCMC	1 cut(s)	335
BstUI	CGCG	1 cut(s)	864
BstV1I	GCAGC	4 cut(s)	358, 394, 779, 816
BstV2I	GAAGAC	1 cut(s)	743
BstZI	CGGCCG	1 cut(s)	54
BsuRI	GGCC	3 cut(s)	56, 568, 940
BtgI	CCRYGG	1 cut(s)	771
BtgZI	GCGATG	1 cut(s)	425
BtsCI	GGATG	6 cut(s)	28, 617, 666, 847, 853, 921
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	2 cut(s)	333, 769
BveI	ACCTGC	1 cut(s)	289
CaiI	CAGNNNCTG	1 cut(s)	460
CfoI	GCGC	4 cut(s)	112, 292, 307, 864
Cfr13I	GGNCC	3 cut(s)	566, 866, 938
Cfr9I	CCCGGG	1 cut(s)	285
CseI	GACGC	1 cut(s)	495
Csp6I	GTAC	2 cut(s)	273, 295
CviAII	CATG	5 cut(s)	224, 298, 772, 784, 976
CviQI	GTAC	2 cut(s)	273, 295
DdeI	CTNAG	4 cut(s)	183, 420, 654, 1014
DpnI	GATC	4 cut(s)	215, 314, 797, 980
DpnII	GATC	4 cut(s)	213, 312, 795, 978
EaeI	YGGCCR	1 cut(s)	54
EagI	CGGCCG	1 cut(s)	54
EclXI	CGGCCG	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	771
Eco47I	GGWCC	1 cut(s)	866
Eco52I	CGGCCG	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	771
ErhI	CCWWGG	1 cut(s)	771
FaeI	CATG	5 cut(s)	227, 301, 775, 787, 979
FalI	AAGNNNNNCTT	2 cut(s)	934, 966
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	5 cut(s)	223, 297, 771, 783, 975
FauI	CCCGC	2 cut(s)	769, 902
FauNDI	CATATG	1 cut(s)	610
FbaI	TGATCA	2 cut(s)	795, 978
FokI	GGATG	6 cut(s)	35, 604, 673, 854, 860, 928
GlaI	GCGC	4 cut(s)	111, 291, 306, 863
HaeII	RGCGCY	3 cut(s)	113, 293, 308
HaeIII	GGCC	3 cut(s)	56, 568, 940
HapII	CCGG	3 cut(s)	53, 120, 286
HgaI	GACGC	1 cut(s)	495
HhaI	GCGC	4 cut(s)	112, 292, 307, 864
Hin1II	CATG	5 cut(s)	227, 301, 775, 787, 979
Hin6I	GCGC	4 cut(s)	110, 290, 305, 862
HinP1I	GCGC	4 cut(s)	110, 290, 305, 862
HinfI	GANTC	8 cut(s)	26, 43, 133, 433, 451, 481, 731, 1018
HpaII	CCGG	3 cut(s)	53, 120, 286
HphI	GGTGA	2 cut(s)	307, 973
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	7 cut(s)	104, 361, 456, 486, 558, 657, 891
Hpy188III	TCNNGA	5 cut(s)	199, 544, 820, 839, 1022
Hpy8I	GTNNAC	1 cut(s)	432
HpyAV	CCTTC	2 cut(s)	221, 899
HpyCH4III	ACNGT	3 cut(s)	343, 817, 886
HpyCH4V	TGCA	6 cut(s)	395, 469, 614, 767, 832, 968
HpyF10VI	GCNNNNNNNGC	6 cut(s)	380, 413, 416, 767, 773, 870
HpyF3I	CTNAG	4 cut(s)	183, 420, 654, 1014
Hsp92II	CATG	5 cut(s)	227, 301, 775, 787, 979
HspAI	GCGC	4 cut(s)	110, 290, 305, 862
Ksp22I	TGATCA	2 cut(s)	795, 978
Kzo9I	GATC	4 cut(s)	213, 312, 795, 978
LmnI	GCTCC	3 cut(s)	104, 361, 758
Lsp1109I	GCAGC	4 cut(s)	358, 394, 779, 816
LweI	GCATC	2 cut(s)	526, 647
MaeIII	GTNAC	1 cut(s)	923
MalI	GATC	4 cut(s)	215, 314, 797, 980
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	4 cut(s)	213, 312, 795, 978
MboII	GAAGA	2 cut(s)	545, 748
MfeI	CAATTG	1 cut(s)	378
MhlI	GDGCHC	1 cut(s)	335
MluCI	AATT	3 cut(s)	378, 549, 892
MlyI	GAGTC	3 cut(s)	127, 427, 460
MmeI	TCCRAC	1 cut(s)	461
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	3 cut(s)	525, 714, 900
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	3 cut(s)	53, 120, 286
MspR9I	CCNGG	4 cut(s)	53, 163, 286, 287
MunI	CAATTG	1 cut(s)	378
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	163
MvnI	CGCG	1 cut(s)	864
MwoI	GCNNNNNNNGC	6 cut(s)	380, 413, 416, 767, 773, 870
NciI	CCSGG	3 cut(s)	53, 286, 287
NcoI	CCATGG	1 cut(s)	771
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	4 cut(s)	213, 312, 795, 978
NlaIII	CATG	5 cut(s)	227, 301, 775, 787, 979
NlaIV	GGNNCC	3 cut(s)	363, 760, 939
NmeAIII	GCCGAG	2 cut(s)	43, 594
NspI	RCATGY	1 cut(s)	787
NspV	TTCGAA	1 cut(s)	734
PcsI	WCGNNNNNNNCGW	2 cut(s)	209, 821
PctI	GAATGC	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	5 cut(s)	26, 43, 481, 731, 1018
PflFI	GACNNNGTC	1 cut(s)	815
PflMI	CCANNNNNTGG	1 cut(s)	875
Ple19I	CGATCG	1 cut(s)	216
PleI	GAGTC	3 cut(s)	127, 427, 459
PpsI	GAGTC	3 cut(s)	127, 427, 459
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	3 cut(s)	363, 760, 939
PspPI	GGNCC	3 cut(s)	566, 866, 938
PstNI	CAGNNNCTG	1 cut(s)	460
PsyI	GACNNNGTC	1 cut(s)	815
PvuI	CGATCG	1 cut(s)	216
RsaI	GTAC	2 cut(s)	274, 296
RsaNI	GTAC	2 cut(s)	273, 295
SaqAI	TTAA	3 cut(s)	525, 714, 900
Sau3AI	GATC	4 cut(s)	213, 312, 795, 978
Sau96I	GGNCC	3 cut(s)	566, 866, 938
SchI	GAGTC	3 cut(s)	127, 427, 460
ScrFI	CCNGG	4 cut(s)	53, 163, 286, 287
SduI	GDGCHC	1 cut(s)	335
SetI	ASST	9 cut(s)	189, 283, 350, 426, 730, 793, 989, 1029, 1037
SfaNI	GCATC	2 cut(s)	526, 647
SfuI	TTCGAA	1 cut(s)	734
SinI	GGWCC	1 cut(s)	866
SmaI	CCCGGG	1 cut(s)	287
SmlI	CTYRAG	2 cut(s)	7, 308
SmoI	CTYRAG	2 cut(s)	7, 308
SrfI	GCCCGGGC	1 cut(s)	287
Sse9I	AATT	3 cut(s)	378, 549, 892
StyD4I	CCNGG	4 cut(s)	51, 161, 284, 285
StyI	CCWWGG	1 cut(s)	771
TaaI	ACNGT	3 cut(s)	343, 817, 886
TaqI	TCGA	6 cut(s)	63, 212, 599, 734, 810, 959
TasI	AATT	3 cut(s)	378, 549, 892
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	6 cut(s)	17, 110, 305, 377, 419, 862
TfiI	GAWTC	5 cut(s)	26, 43, 481, 731, 1018
Tru1I	TTAA	3 cut(s)	525, 714, 900
Tru9I	TTAA	3 cut(s)	525, 714, 900
TscAI	CASTG	2 cut(s)	340, 769
TseI	GCWGC	4 cut(s)	371, 407, 767, 829
TspDTI	ATGAA	4 cut(s)	17, 35, 39, 240
TspMI	CCCGGG	1 cut(s)	285
TspRI	CASTG	2 cut(s)	340, 769
Tth111I	GACNNNGTC	1 cut(s)	815
Van91I	CCANNNNNTGG	1 cut(s)	875
VpaK11BI	GGWCC	1 cut(s)	866
XapI	RAATTY	2 cut(s)	549, 892
XceI	RCATGY	1 cut(s)	787
XcmI	CCANNNNNNNNNTGG	2 cut(s)	325, 769
XmaI	CCCGGG	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.