pycom09g06410

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
4707010 .. 4710249
3240 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g06410.1

Sequence Viewer

Length: 1053 bp
ATGGAAGCAGCGGCGGCGGAGCCCATCAGGGTTCAAAGCCTGGCCCAAGCCGGTCTGACCCAAGTTCCGCCCCAATACATTCAACCTCCCCAGCACCGACCGAACCAACCATCATCCTCAACCAACGTTCCCATCATCGACCTATTCGGACCCGACCCGACCCGCCGCGACTCGGTTCGGGCCTCAATCGGACAAGCCTGCAGAGACTGGGGCGCCTTCCACGTTACCAATCACGGCGTACCCGCCGCCTTACTCGATGCCATTAAGCGCGCCGGCCTCACCTTCTTCAACGATAGCTCAGTCGAAGACAAGCTGAACTACGCGTGCGATCGGAGCTCGTCAGCGTCGGAGGGGTACGGCAGCCGGATGTTGGAGAAGGACGACACCGTTTTGGACTGGAGAGATTACTTCGACCACCATACTCTCCCCCTCGCGCGCCGGGACCCTACGCGCTGGCCCGATTTTCCCGCGGACTACCGACGGGTGGTATCCGAGTACAGCGATCGAATAGCTTCGCTGGCGCGGGAGCTGCTGGGACTGGTATCGGAAAGCCTGGGGCTTGAAACGCGGCGTATGGAGGAGGCGGTGGGGGAGTTTTGGCAGAACATTACGATTAGCTACTACCCGCCTTGTCCTCAGCCGGAGCTGACATTGGGCCTGCAGTCCCATTCGGATTTTGGGGCGATCACGCTGCTGGTCCAGGACGAGGTGGGCGGGCTTGAGGTGCTTAAGGACGGCGATTGGGTGCCGGTGAAGCCTTTGGGCGGCGACGCCATTGTTGTGCTTTTAGCTGACCAAACTGAGATAATAACGAACGGGAAGTACAGAAGTGCCGTGCATAGGGCTCTAACCAATTCCCATCAGCCACGACTCTCAGTGGCTACATTTCACGATCCGGCCAAGACAGTGAAAGTATCCCCTGCTTCGGAGCTCATCAGCGAGTCGACTCCTGCCCTTTACCGTGAAGTTGTGTATGGAGATTATGTGTCGTCGTGGTACACAAAAGGCCCCGAAGGAAAACGAAATATTGATGCCCTCCTGCTCGAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

351

Amino Acids

38.74

Weight (kDa)

5.17

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 43 - 154 3.8e-23 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 202 - 299 1.3e-29 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 212, 745
AccI GTMKAC 1 cut(s) 944
AccII CGCG 9 cut(s) 168, 270, 323, 434, 436, 451, 470, 523, 568
AclI AACGTT 1 cut(s) 126
AclWI GGATC 1 cut(s) 887
AcoI YGGCCR 1 cut(s) 897
AcyI GRCGYC 2 cut(s) 213, 771
AfaI GTAC 5 cut(s) 240, 356, 497, 824, 998
AfiI CCNNNNNNNGG 7 cut(s) 172, 370, 484, 706, 764, 840, 925
AflII CTTAAG 1 cut(s) 728
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 4 cut(s) 35, 83, 289, 563
AjnI CCWGG 3 cut(s) 39, 552, 699
AluBI AGCT 9 cut(s) 297, 313, 336, 512, 529, 618, 646, 791, 931
AluI AGCT 9 cut(s) 297, 313, 336, 512, 529, 618, 646, 791, 931
Alw21I GWGCWC 2 cut(s) 338, 933
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 1 cut(s) 887
AlwNI CAGNNNCTG 1 cut(s) 207
AoxI GGCC 7 cut(s) 42, 180, 274, 455, 655, 897, 1006
ApeKI GCWGC 4 cut(s) 8, 360, 529, 691
Asp700I GAANNNNTTC 1 cut(s) 511
AspLEI GCGC 7 cut(s) 215, 270, 272, 436, 438, 453, 523
AspS9I GGNCC 8 cut(s) 43, 149, 180, 442, 456, 655, 697, 1007
AsuC2I CCSGG 1 cut(s) 440
AsuHPI GGTGA 2 cut(s) 271, 763
AvaII GGWCC 3 cut(s) 149, 442, 697
BanI GGYRCC 2 cut(s) 212, 745
BanII GRGCYC 4 cut(s) 24, 338, 847, 933
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 2 cut(s) 338, 933
BbvCI CCTCAGC 1 cut(s) 636
BbvI GCAGC 4 cut(s) 20, 372, 516, 678
BccI CCATC 4 cut(s) 32, 118, 140, 867
BceAI ACGGC 4 cut(s) 250, 373, 751, 818
BcgI CGANNNNNNTGC 2 cut(s) 673, 707
BciT130I CCWGG 3 cut(s) 41, 554, 701
BciVI GTATCC 2 cut(s) 499, 925
BcnI CCSGG 1 cut(s) 440
BcoDI GTCTC 1 cut(s) 198
BfmI CTRYAG 2 cut(s) 199, 659
BfoI RGCGCY 1 cut(s) 216
BfrI CTTAAG 1 cut(s) 728
BfuI GTATCC 2 cut(s) 499, 925
Bme1390I CCNGG 4 cut(s) 41, 440, 554, 701
Bme18I GGWCC 3 cut(s) 149, 442, 697
BmgT120I GGNCC 8 cut(s) 43, 149, 180, 442, 456, 655, 697, 1007
BmiI GGNNCC 7 cut(s) 21, 151, 214, 443, 444, 747, 1009
BmrFI CCNGG 4 cut(s) 41, 440, 554, 701
BmrI ACTGGG 1 cut(s) 217
BmsI GCATC 2 cut(s) 247, 1021
BmuI ACTGGG 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 418
Bpu10I CCTNAGC 1 cut(s) 636
BpuEI CTTGAG 1 cut(s) 740
BpuMI CCSGG 1 cut(s) 440
BsaHI GRCGYC 2 cut(s) 213, 771
BsaJI CCNNGG 2 cut(s) 468, 553
BsaXI ACNNNNNCTCC 2 cut(s) 969, 999
Bsc4I CCNNNNNNNGG 7 cut(s) 172, 370, 484, 706, 764, 840, 925
Bse118I RCCGGY 3 cut(s) 50, 272, 748
Bse1I ACTGG 3 cut(s) 212, 401, 543
BseBI CCWGG 3 cut(s) 41, 554, 701
BseDI CCNNGG 2 cut(s) 468, 553
BseGI GGATG 2 cut(s) 113, 372
BseLI CCNNNNNNNGG 7 cut(s) 172, 370, 484, 706, 764, 840, 925
BseMII CTCAG 4 cut(s) 312, 650, 792, 888
BseNI ACTGG 3 cut(s) 212, 401, 543
BsePI GCGCGC 2 cut(s) 268, 434
BseRI GAGGAG 1 cut(s) 593
BseXI GCAGC 4 cut(s) 20, 372, 516, 678
BseYI CCCAGC 2 cut(s) 90, 532
Bsh1236I CGCG 9 cut(s) 168, 270, 323, 434, 436, 451, 470, 523, 568
Bsh1285I CGRYCG 3 cut(s) 101, 331, 505
BshFI GGCC 7 cut(s) 44, 182, 276, 457, 657, 899, 1008
BshNI GGYRCC 2 cut(s) 212, 745
BsiEI CGRYCG 3 cut(s) 101, 331, 505
BsiHKAI GWGCWC 2 cut(s) 338, 933
BsiSI CCGG 7 cut(s) 51, 273, 364, 439, 641, 749, 896
BslFI GGGAC 3 cut(s) 455, 549, 649
BslI CCNNNNNNNGG 7 cut(s) 172, 370, 484, 706, 764, 840, 925
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 3 cut(s) 455, 549, 649
BsnI GGCC 7 cut(s) 44, 182, 276, 457, 657, 899, 1008
Bsp1286I GDGCHC 4 cut(s) 24, 338, 847, 933
Bsp143I GATC 4 cut(s) 328, 502, 684, 892
BspANI GGCC 7 cut(s) 44, 182, 276, 457, 657, 899, 1008
BspCNI CTCAG 4 cut(s) 311, 649, 793, 887
BspFNI CGCG 9 cut(s) 168, 270, 323, 434, 436, 451, 470, 523, 568
BspLI GGNNCC 7 cut(s) 21, 151, 214, 443, 444, 747, 1009
BspMAI CTGCAG 2 cut(s) 203, 663
BspPI GGATC 1 cut(s) 887
BspT107I GGYRCC 2 cut(s) 212, 745
BspTI CTTAAG 1 cut(s) 728
BsrFI RCCGGY 3 cut(s) 50, 272, 748
BsrI ACTGG 3 cut(s) 212, 401, 543
BssAI RCCGGY 3 cut(s) 50, 272, 748
BssECI CCNNGG 2 cut(s) 468, 553
BssHII GCGCGC 2 cut(s) 268, 434
BssMI GATC 4 cut(s) 328, 502, 684, 892
BssNI GRCGYC 2 cut(s) 213, 771
Bst2UI CCWGG 3 cut(s) 41, 554, 701
Bst4CI ACNGT 3 cut(s) 388, 907, 962
BstACI GRCGYC 2 cut(s) 213, 771
BstAFI CTTAAG 1 cut(s) 728
BstC8I GCNNGC 9 cut(s) 199, 270, 274, 325, 436, 455, 519, 659, 716
BstDEI CTNAG 4 cut(s) 298, 636, 801, 874
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 2 cut(s) 113, 372
BstFNI CGCG 9 cut(s) 168, 270, 323, 434, 436, 451, 470, 523, 568
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 7 cut(s) 215, 270, 272, 436, 438, 453, 523
BstKTI GATC 4 cut(s) 331, 505, 687, 895
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 4 cut(s) 328, 502, 684, 892
BstMCI CGRYCG 3 cut(s) 101, 331, 505
BstMWI GCNNNNNNNGC 7 cut(s) 14, 333, 518, 529, 565, 724, 754
BstNI CCWGG 3 cut(s) 41, 554, 701
BstSCI CCNGG 4 cut(s) 39, 438, 552, 699
BstSFI CTRYAG 2 cut(s) 199, 659
BstUI CGCG 9 cut(s) 168, 270, 323, 434, 436, 451, 470, 523, 568
BstV1I GCAGC 4 cut(s) 20, 372, 516, 678
BstV2I GAAGAC 1 cut(s) 312
BsuI GTATCC 2 cut(s) 499, 925
BsuRI GGCC 7 cut(s) 44, 182, 276, 457, 657, 899, 1008
BtgI CCRYGG 1 cut(s) 468
BtsCI GGATG 2 cut(s) 113, 372
BtsIMutI CAGTG 2 cut(s) 882, 912
Cac8I GCNNGC 9 cut(s) 199, 270, 274, 325, 436, 455, 519, 659, 716
CaiI CAGNNNCTG 1 cut(s) 207
CfoI GCGC 7 cut(s) 215, 270, 272, 436, 438, 453, 523
Cfr10I RCCGGY 3 cut(s) 50, 272, 748
Cfr13I GGNCC 8 cut(s) 43, 149, 180, 442, 456, 655, 697, 1007
Cfr42I CCGCGG 1 cut(s) 471
CseI GACGC 2 cut(s) 333, 779
Csp6I GTAC 5 cut(s) 239, 355, 496, 823, 997
CviQI GTAC 5 cut(s) 239, 355, 496, 823, 997
DdeI CTNAG 4 cut(s) 298, 636, 801, 874
DinI GGCGCC 1 cut(s) 214
DpnI GATC 4 cut(s) 330, 504, 686, 894
DpnII GATC 4 cut(s) 328, 502, 684, 892
EaeI YGGCCR 1 cut(s) 897
EciI GGCGGA 2 cut(s) 32, 57
Ecl136II GAGCTC 2 cut(s) 336, 931
Eco24I GRGCYC 4 cut(s) 24, 338, 847, 933
Eco47I GGWCC 3 cut(s) 149, 442, 697
Eco53kI GAGCTC 2 cut(s) 336, 931
EcoICRI GAGCTC 2 cut(s) 336, 931
EcoO109I RGGNCCY 2 cut(s) 442, 1007
EcoRII CCWGG 3 cut(s) 39, 552, 699
EcoT38I GRGCYC 4 cut(s) 24, 338, 847, 933
EgeI GGCGCC 1 cut(s) 214
EheI GGCGCC 1 cut(s) 214
FaiI YATR 5 cut(s) 420, 575, 840, 975, 984
FaqI GGGAC 3 cut(s) 455, 549, 649
FauI CCCGC 6 cut(s) 170, 250, 475, 516, 633, 707
FblI GTMKAC 1 cut(s) 944
FokI GGATG 2 cut(s) 100, 379
FriOI GRGCYC 4 cut(s) 24, 338, 847, 933
GlaI GCGC 7 cut(s) 214, 269, 271, 435, 437, 452, 522
GsaI CCCAGC 2 cut(s) 94, 536
GsuI CTGGAG 1 cut(s) 418
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 7 cut(s) 44, 182, 276, 457, 657, 899, 1008
HapII CCGG 7 cut(s) 51, 273, 364, 439, 641, 749, 896
HgaI GACGC 2 cut(s) 333, 779
HhaI GCGC 7 cut(s) 215, 270, 272, 436, 438, 453, 523
Hin1I GRCGYC 2 cut(s) 213, 771
Hin6I GCGC 7 cut(s) 213, 268, 270, 434, 436, 451, 521
HinP1I GCGC 7 cut(s) 213, 268, 270, 434, 436, 451, 521
HincII GTYRAC 1 cut(s) 945
HindII GTYRAC 1 cut(s) 945
HinfI GANTC 4 cut(s) 170, 870, 941, 946
HpaII CCGG 7 cut(s) 51, 273, 364, 439, 641, 749, 896
HphI GGTGA 2 cut(s) 271, 763
Hpy166II GTNNAC 2 cut(s) 945, 999
Hpy188I TCNGA 9 cut(s) 57, 149, 191, 333, 349, 493, 547, 673, 928
Hpy188III TCNNGA 1 cut(s) 890
Hpy8I GTNNAC 2 cut(s) 945, 999
Hpy99I CGWCG 4 cut(s) 349, 483, 773, 994
HpyAV CCTTC 4 cut(s) 226, 292, 370, 1007
HpyCH4III ACNGT 3 cut(s) 388, 907, 962
HpyCH4IV ACGT 2 cut(s) 126, 222
HpyCH4V TGCA 3 cut(s) 201, 661, 838
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 333, 518, 529, 565, 724, 754
HpyF3I CTNAG 4 cut(s) 298, 636, 801, 874
HpySE526I ACGT 2 cut(s) 126, 222
Hsp92I GRCGYC 2 cut(s) 213, 771
HspAI GCGC 7 cut(s) 213, 268, 270, 434, 436, 451, 521
KasI GGCGCC 1 cut(s) 212
KflI GGGWCCC 1 cut(s) 442
KroI GCCGGC 1 cut(s) 272
KroNI GCCGGC 1 cut(s) 274
KspI CCGCGG 1 cut(s) 471
Kzo9I GATC 4 cut(s) 328, 502, 684, 892
LmnI GCTCC 5 cut(s) 19, 333, 526, 643, 928
Lsp1109I GCAGC 4 cut(s) 20, 372, 516, 678
LweI GCATC 2 cut(s) 247, 1021
MaeII ACGT 2 cut(s) 126, 222
MaeIII GTNAC 1 cut(s) 223
MalI GATC 4 cut(s) 330, 504, 686, 894
MboI GATC 4 cut(s) 328, 502, 684, 892
MboII GAAGA 2 cut(s) 277, 317
MhlI GDGCHC 4 cut(s) 24, 338, 847, 933
MluCI AATT 1 cut(s) 853
MluI ACGCGT 1 cut(s) 321
Mly113I GGCGCC 1 cut(s) 213
MlyI GAGTC 4 cut(s) 164, 864, 940, 950
MmeI TCCRAC 2 cut(s) 327, 351
MroNI GCCGGC 1 cut(s) 272
MroXI GAANNNNTTC 1 cut(s) 511
MseI TTAA 2 cut(s) 264, 729
MslI CAYNNNNRTG 1 cut(s) 779
MspA1I CMGCKG 2 cut(s) 11, 470
MspCI CTTAAG 1 cut(s) 728
MspI CCGG 7 cut(s) 51, 273, 364, 439, 641, 749, 896
MspR9I CCNGG 4 cut(s) 41, 440, 554, 701
MvaI CCWGG 3 cut(s) 41, 554, 701
MvnI CGCG 9 cut(s) 168, 270, 323, 434, 436, 451, 470, 523, 568
MwoI GCNNNNNNNGC 7 cut(s) 14, 333, 518, 529, 565, 724, 754
NaeI GCCGGC 1 cut(s) 274
NarI GGCGCC 1 cut(s) 213
NciI CCSGG 1 cut(s) 440
NdeII GATC 4 cut(s) 328, 502, 684, 892
NgoMIV GCCGGC 1 cut(s) 272
NlaIV GGNNCC 7 cut(s) 21, 151, 214, 443, 444, 747, 1009
PauI GCGCGC 2 cut(s) 268, 434
PdiI GCCGGC 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 511
PfoI TCCNGGA 1 cut(s) 699
Ple19I CGATCG 2 cut(s) 331, 505
PleI GAGTC 4 cut(s) 164, 864, 940, 949
PluTI GGCGCC 1 cut(s) 216
PpsI GAGTC 4 cut(s) 164, 864, 940, 949
PpuMI RGGWCCY 1 cut(s) 442
Psp124BI GAGCTC 2 cut(s) 338, 933
Psp1406I AACGTT 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 442
Psp6I CCWGG 3 cut(s) 39, 552, 699
PspFI CCCAGC 2 cut(s) 90, 532
PspGI CCWGG 3 cut(s) 39, 552, 699
PspN4I GGNNCC 7 cut(s) 21, 151, 214, 443, 444, 747, 1009
PspPI GGNCC 8 cut(s) 43, 149, 180, 442, 456, 655, 697, 1007
PspPPI RGGWCCY 1 cut(s) 442
PsrI GAACNNNNNNTAC 2 cut(s) 806, 838
PstI CTGCAG 2 cut(s) 203, 663
PstNI CAGNNNCTG 1 cut(s) 207
PteI GCGCGC 2 cut(s) 268, 434
PvuI CGATCG 2 cut(s) 331, 505
RsaI GTAC 5 cut(s) 240, 356, 497, 824, 998
RsaNI GTAC 5 cut(s) 239, 355, 496, 823, 997
RseI CAYNNNNRTG 1 cut(s) 779
SacI GAGCTC 2 cut(s) 338, 933
SacII CCGCGG 1 cut(s) 471
SalI GTCGAC 1 cut(s) 943
SaqAI TTAA 2 cut(s) 264, 729
Sau3AI GATC 4 cut(s) 328, 502, 684, 892
Sau96I GGNCC 8 cut(s) 43, 149, 180, 442, 456, 655, 697, 1007
SchI GAGTC 4 cut(s) 164, 864, 940, 950
ScrFI CCNGG 4 cut(s) 41, 440, 554, 701
SduI GDGCHC 4 cut(s) 24, 338, 847, 933
SfaNI GCATC 2 cut(s) 247, 1021
SfcI CTRYAG 2 cut(s) 199, 659
SfoI GGCGCC 1 cut(s) 214
Sfr303I CCGCGG 1 cut(s) 471
SgrBI CCGCGG 1 cut(s) 471
SinI GGWCC 3 cut(s) 149, 442, 697
SmiMI CAYNNNNRTG 1 cut(s) 779
SmlI CTYRAG 2 cut(s) 719, 728
SmoI CTYRAG 2 cut(s) 719, 728
Sse9I AATT 1 cut(s) 853
SspDI GGCGCC 1 cut(s) 212
SspI AATATT 1 cut(s) 1027
SstI GAGCTC 2 cut(s) 338, 933
StyD4I CCNGG 4 cut(s) 39, 438, 552, 699
TaaI ACNGT 3 cut(s) 388, 907, 962
TaiI ACGT 2 cut(s) 129, 225
TaqI TCGA 7 cut(s) 138, 255, 303, 411, 505, 944, 1044
TaqII GACCGA 1 cut(s) 115
TasI AATT 1 cut(s) 853
TatI WGTACW 2 cut(s) 495, 822
TauI GCSGC 6 cut(s) 14, 17, 168, 248, 571, 768
Tru1I TTAA 2 cut(s) 264, 729
Tru9I TTAA 2 cut(s) 264, 729
TscAI CASTG 2 cut(s) 882, 912
TseI GCWGC 4 cut(s) 8, 360, 529, 691
TspRI CASTG 2 cut(s) 882, 912
Vha464I CTTAAG 1 cut(s) 728
VpaK11BI GGWCC 3 cut(s) 149, 442, 697
XcmI CCANNNNNNNNNTGG 1 cut(s) 674
XmiI GTMKAC 1 cut(s) 944
XmnI GAANNNNTTC 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.