AT4G17230

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
9660593 .. 9663809
3217 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17230.2

Sequence Viewer

Length: 1590 bp
ATGCAAACGTCTCAGAAACATCACAGTGCGGCTGGACTGCACATGCTGTATCCTCAAGTCTACTGTTCACCTCAGTTTCAAGCGAAAGACAACAAAGGCTTCTCTGATATCCCGTCCAAAGAAAACTTTTTTACCCTCGAATCCTCCACTGCTTCTGGTAGTCTTCCTTCGTATGACTCTCCTTCTGTGAGCATTACATCTGGCCGGAGCCCGTTTTCTCCTCAGGGCTCTCAGTCTTGCATCTCGGATCTCCATCATTCCCCTGACAACGTCTATGGATCACCTTTGAGTGGGGTGTCATCTCTTGCCTATGATGAAGCTGGAGTCAAGAGTAAGATTCGGGAACTTGAGGTCTCGCTGCTGAGTGGTGATACAAAAGTTGAAGAATTCTCAGGTTTTAGCCCCGCTGCTGGGAAGTCGTGGAACTGGGATGAACTTTTGGCTTTGACTCCACAGTTGGACTTGAAAGAGGTGCTGGTGGAGGCTGCTCGGGCAGTCGCTGATGGGGATTTCGCTACAGCGTATGGATTCCTTGATGTCTTGGAACAGATGGTGTCAGTCTCAGGCAGTCCGATCCAACGGCTAGGCACTTACATGGCAGAAGGGCTTAGAGCGAGGCTTGAGGGGTCTGGGAGCAATATATACAAATCCTTGAAATGCAATGAACCAACGGGAAGGGAACTGATGTCTTACATGAGTGTTCTCTATGAAATCTGCCCCTACTGGAAATTCGCGTACACAACTGCGAATGTTGAGATCTTGGAAGCAATAGCTGGGGAAACCAGAGTCCACATTATCGATTTTCAGATTGCACAGGGATCACAATACATGTTTTTGATTCAGGAGCTTGCGAAACGCCCTGGTGGGCCGCCGTTGCTGCGTGTGACGGGTGTGGATGATTCACAGTCCACCTATGCTCGTGGGGGAGGACTCAGCTTGGTAGGTGAGAGGCTTGCAACTTTGGCGCAGTCATGTGGTGTCCCGTTTGAGTTTCACGATGCCATCATGTCTGGGTGCAAGGTGCAGCGGGAACATCTCGGGTTGGAACCTGGCTTTGCTGTTGTTGTGAACTTCCCATATGTATTACACCACATGCCAGACGAGAGCGTAAGTGTTGAAAATCACAGAGACAGGCTGCTGCATCTGATCAAGAGCCTCTCCCCAAAACTGGTTACTCTAGTAGAGCAAGAATCCAACACAAACACCTCGCCATTCCTGTCACGGTTTGTGGAAACACTGGATTACTACACAGCGATGTTTGAGTCGATAGATGCAGCACGGCCACGGGATGATAAGCAGAGAATCAGCGCAGAACAACACTGTGTAGCAAGAGACATAGTGAACATGATAGCATGTGAGGAGTCAGAGAGAGTAGAGAGACACGAGGTACTGGGGATATGGAGGGTCAGAATGATGATGGCTGGGTTCACGGGTTGGCCGGTCAGCACATCTGCAGCGTTTGCAGCGAGTGAGATGCTGAAAGCTTATGACAAAAACTACAAACTGGGAGGCCATGAAGGAGCGCTCTACCTCTTCTGGAAGAGACGACCCATGGCTACATGTTCCGTGTGGAAGCCAAACCCAAACTAG

Protein Analysis

529

Amino Acids

58.45

Weight (kDa)

5.58

Isoelectric Point (pI)

48.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 155 - 525 5.3e-126 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011038)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 60
AccII CGCG 1 cut(s) 734
AciI CCGC 4 cut(s) 29, 405, 869, 1027
AclWI GGATC 4 cut(s) 255, 286, 568, 826
AcoI YGGCCR 3 cut(s) 202, 1280, 1436
AcsI RAATTY 2 cut(s) 386, 728
AfaI GTAC 2 cut(s) 737, 1389
AfeI AGCGCT 1 cut(s) 1524
AfiI CCNNNNNNNGG 4 cut(s) 290, 410, 411, 1168
AflIII ACRYGT 2 cut(s) 828, 1559
AgsI TTSAA 5 cut(s) 80, 383, 466, 655, 1118
AjnI CCWGG 2 cut(s) 859, 1048
AluBI AGCT 5 cut(s) 320, 773, 847, 936, 1484
AluI AGCT 5 cut(s) 320, 773, 847, 936, 1484
Alw26I GTCTC 7 cut(s) 15, 358, 565, 1122, 1326, 1372, 1537
AlwI GGATC 4 cut(s) 255, 286, 568, 826
AlwNI CAGNNNCTG 1 cut(s) 500
Ama87I CYCGRG 2 cut(s) 489, 1037
Aor51HI AGCGCT 1 cut(s) 1524
AoxI GGCC 5 cut(s) 202, 866, 1280, 1436, 1510
ApoI RAATTY 2 cut(s) 386, 728
AspLEI GCGC 3 cut(s) 967, 1310, 1525
AspS9I GGNCC 1 cut(s) 866
AsuHPI GGTGA 4 cut(s) 60, 273, 380, 956
AvaI CYCGRG 2 cut(s) 489, 1037
AxyI CCTNAGG 1 cut(s) 222
BaeI ACNNNNGTAYC 2 cut(s) 363, 396
BanII GRGCYC 2 cut(s) 212, 230
BarI GAAGNNNNNNTAC 2 cut(s) 151, 183
BauI CACGAG 2 cut(s) 918, 1382
BbsI GAAGAC 1 cut(s) 155
BccI CCATC 5 cut(s) 261, 497, 544, 1010, 1411
BceAI ACGGC 3 cut(s) 596, 856, 1295
BcgI CGANNNNNNTGC 2 cut(s) 1456, 1490
BciT130I CCWGG 2 cut(s) 861, 1050
BciVI GTATCC 1 cut(s) 60
BclI TGATCA 1 cut(s) 1146
BcoDI GTCTC 7 cut(s) 15, 358, 565, 1122, 1326, 1372, 1537
BfaI CTAG 3 cut(s) 584, 1178, 1588
BfmI CTRYAG 2 cut(s) 516, 1452
BfoI RGCGCY 1 cut(s) 1526
BfuI GTATCC 1 cut(s) 60
BglII AGATCT 1 cut(s) 756
Bme1390I CCNGG 2 cut(s) 861, 1050
BmeT110I CYCGRG 2 cut(s) 489, 1037
BmgT120I GGNCC 1 cut(s) 866
BmiI GGNNCC 2 cut(s) 209, 1047
BmrFI CCNGG 2 cut(s) 861, 1050
BmrI ACTGGG 3 cut(s) 436, 1400, 1514
BmsI GCATC 5 cut(s) 249, 988, 1150, 1261, 1464
BmuI ACTGGG 3 cut(s) 436, 1400, 1514
BpiI GAAGAC 1 cut(s) 155
BpmI CTGGAG 1 cut(s) 342
BpuEI CTTGAG 3 cut(s) 39, 368, 641
Bsa29I ATCGAT 1 cut(s) 798
BsaBI GATNNNNATC 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 358
BsaJI CCNNGG 3 cut(s) 859, 1283, 1551
Bsc4I CCNNNNNNNGG 4 cut(s) 290, 410, 411, 1168
Bse118I RCCGGY 1 cut(s) 1438
Bse1I ACTGG 6 cut(s) 431, 728, 1173, 1242, 1395, 1509
Bse21I CCTNAGG 1 cut(s) 222
Bse3DI GCAATG 1 cut(s) 667
Bse8I GATNNNNATC 1 cut(s) 252
BseBI CCWGG 2 cut(s) 861, 1050
BseCI ATCGAT 1 cut(s) 798
BseDI CCNNGG 3 cut(s) 859, 1283, 1551
BseGI GGATG 3 cut(s) 436, 901, 1294
BseJI GATNNNNATC 1 cut(s) 252
BseLI CCNNNNNNNGG 4 cut(s) 290, 410, 411, 1168
BseMI GCAATG 1 cut(s) 667
BseMII CTCAG 8 cut(s) 26, 86, 236, 245, 353, 405, 576, 946
BseNI ACTGG 6 cut(s) 431, 728, 1173, 1242, 1395, 1509
BseRI GAGGAG 2 cut(s) 210, 1373
BseYI CCCAGC 3 cut(s) 410, 773, 1421
BsgI GTGCAG 2 cut(s) 23, 1043
Bsh1236I CGCG 1 cut(s) 734
BshFI GGCC 5 cut(s) 204, 868, 1282, 1438, 1512
BshVI ATCGAT 1 cut(s) 798
BsiHKCI CYCGRG 2 cut(s) 489, 1037
BsiSI CCGG 2 cut(s) 205, 1439
BslFI GGGAC 1 cut(s) 965
BslI CCNNNNNNNGG 4 cut(s) 290, 410, 411, 1168
BsmAI GTCTC 7 cut(s) 15, 358, 565, 1122, 1326, 1372, 1537
BsmBI CGTCTC 2 cut(s) 15, 1537
BsmFI GGGAC 1 cut(s) 965
BsnI GGCC 5 cut(s) 204, 868, 1282, 1438, 1512
Bso31I GGTCTC 1 cut(s) 358
BsoBI CYCGRG 2 cut(s) 489, 1037
Bsp1286I GDGCHC 2 cut(s) 212, 230
Bsp143I GATC 6 cut(s) 247, 278, 573, 756, 818, 1146
Bsp19I CCATGG 1 cut(s) 1551
BspACI CCGC 4 cut(s) 29, 405, 869, 1027
BspANI GGCC 5 cut(s) 204, 868, 1282, 1438, 1512
BspCNI CTCAG 8 cut(s) 25, 85, 235, 244, 354, 404, 575, 945
BspDI ATCGAT 1 cut(s) 798
BspFNI CGCG 1 cut(s) 734
BspLI GGNNCC 2 cut(s) 209, 1047
BspMAI CTGCAG 1 cut(s) 1456
BspPI GGATC 4 cut(s) 255, 286, 568, 826
BspTNI GGTCTC 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 667
BsrFI RCCGGY 1 cut(s) 1438
BsrI ACTGG 6 cut(s) 431, 728, 1173, 1242, 1395, 1509
BssAI RCCGGY 1 cut(s) 1438
BssECI CCNNGG 3 cut(s) 859, 1283, 1551
BssMI GATC 6 cut(s) 247, 278, 573, 756, 818, 1146
BssSI CACGAG 2 cut(s) 918, 1382
BssT1I CCWWGG 1 cut(s) 1551
Bst2BI CACGAG 2 cut(s) 918, 1382
Bst2UI CCWGG 2 cut(s) 861, 1050
Bst4CI ACNGT 6 cut(s) 26, 65, 456, 906, 1224, 1322
Bst6I CTCTTC 2 cut(s) 1535, 1538
BstAPI GCANNNNNTGC 1 cut(s) 1460
BstC8I GCNNGC 2 cut(s) 849, 954
BstDEI CTNAG 9 cut(s) 12, 72, 222, 231, 362, 391, 562, 608, 932
BstDSI CCRYGG 2 cut(s) 1283, 1551
BstF5I GGATG 3 cut(s) 436, 901, 1294
BstFNI CGCG 1 cut(s) 734
BstH2I RGCGCY 1 cut(s) 1526
BstHHI GCGC 3 cut(s) 967, 1310, 1525
BstKTI GATC 6 cut(s) 250, 281, 576, 759, 821, 1149
BstMAI GTCTC 7 cut(s) 15, 358, 565, 1122, 1326, 1372, 1537
BstMBI GATC 6 cut(s) 247, 278, 573, 756, 818, 1146
BstMWI GCNNNNNNNGC 6 cut(s) 491, 874, 877, 962, 1460, 1463
BstNI CCWGG 2 cut(s) 861, 1050
BstNSI RCATGY 5 cut(s) 46, 832, 1096, 1356, 1563
BstSCI CCNGG 2 cut(s) 859, 1048
BstSFI CTRYAG 2 cut(s) 516, 1452
BstUI CGCG 1 cut(s) 734
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 2 cut(s) 247, 756
BstYI RGATCY 2 cut(s) 247, 756
Bsu15I ATCGAT 1 cut(s) 798
Bsu36I CCTNAGG 1 cut(s) 222
BsuI GTATCC 1 cut(s) 60
BsuRI GGCC 5 cut(s) 204, 868, 1282, 1438, 1512
BsuTUI ATCGAT 1 cut(s) 798
BtgI CCRYGG 2 cut(s) 1283, 1551
BtgZI GCGATG 1 cut(s) 1268
BtsCI GGATG 3 cut(s) 436, 901, 1294
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 4 cut(s) 31, 147, 1235, 1318
Cac8I GCNNGC 2 cut(s) 849, 954
CaiI CAGNNNCTG 1 cut(s) 500
CfoI GCGC 3 cut(s) 967, 1310, 1525
Cfr10I RCCGGY 1 cut(s) 1438
Cfr13I GGNCC 1 cut(s) 866
ClaI ATCGAT 1 cut(s) 798
Csp6I GTAC 2 cut(s) 736, 1388
CviQI GTAC 2 cut(s) 736, 1388
DdeI CTNAG 9 cut(s) 12, 72, 222, 231, 362, 391, 562, 608, 932
DpnI GATC 6 cut(s) 249, 280, 575, 758, 820, 1148
DpnII GATC 6 cut(s) 247, 278, 573, 756, 818, 1146
EaeI YGGCCR 3 cut(s) 202, 1280, 1436
Eam1104I CTCTTC 2 cut(s) 1535, 1538
EarI CTCTTC 2 cut(s) 1535, 1538
Eco130I CCWWGG 1 cut(s) 1551
Eco24I GRGCYC 2 cut(s) 212, 230
Eco31I GGTCTC 1 cut(s) 358
Eco32I GATATC 1 cut(s) 109
Eco47III AGCGCT 1 cut(s) 1524
Eco81I CCTNAGG 1 cut(s) 222
Eco88I CYCGRG 2 cut(s) 489, 1037
EcoRI GAATTC 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 859, 1048
EcoRV GATATC 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 1551
EcoT38I GRGCYC 2 cut(s) 212, 230
ErhI CCWWGG 1 cut(s) 1551
Esp3I CGTCTC 2 cut(s) 15, 1537
FaqI GGGAC 1 cut(s) 965
FauI CCCGC 2 cut(s) 412, 1020
FauNDI CATATG 1 cut(s) 1078
FbaI TGATCA 1 cut(s) 1146
FblI GTMKAC 1 cut(s) 60
FokI GGATG 3 cut(s) 443, 908, 1301
FriOI GRGCYC 2 cut(s) 212, 230
FspBI CTAG 3 cut(s) 584, 1178, 1588
GlaI GCGC 3 cut(s) 966, 1309, 1524
GsaI CCCAGC 3 cut(s) 414, 777, 1425
GsuI CTGGAG 1 cut(s) 342
HaeII RGCGCY 1 cut(s) 1526
HaeIII GGCC 5 cut(s) 204, 868, 1282, 1438, 1512
HapII CCGG 2 cut(s) 205, 1439
HhaI GCGC 3 cut(s) 967, 1310, 1525
Hin6I GCGC 3 cut(s) 965, 1308, 1523
HinP1I GCGC 3 cut(s) 965, 1308, 1523
HindIII AAGCTT 1 cut(s) 1482
HpaII CCGG 2 cut(s) 205, 1439
HphI GGTGA 4 cut(s) 60, 273, 380, 956
Hpy166II GTNNAC 8 cut(s) 61, 68, 738, 790, 909, 1069, 1342, 1428
Hpy188I TCNGA 8 cut(s) 15, 106, 247, 573, 807, 1146, 1366, 1409
Hpy188III TCNNGA 6 cut(s) 328, 341, 842, 995, 1150, 1537
Hpy8I GTNNAC 8 cut(s) 61, 68, 738, 790, 909, 1069, 1342, 1428
HpyAV CCTTC 5 cut(s) 177, 192, 596, 669, 1511
HpyCH4III ACNGT 6 cut(s) 26, 65, 456, 906, 1224, 1322
HpyCH4IV ACGT 2 cut(s) 8, 270
HpyF10VI GCNNNNNNNGC 6 cut(s) 491, 874, 877, 962, 1460, 1463
HpyF3I CTNAG 9 cut(s) 12, 72, 222, 231, 362, 391, 562, 608, 932
HpySE526I ACGT 2 cut(s) 8, 270
HspAI GCGC 3 cut(s) 965, 1308, 1523
Ksp22I TGATCA 1 cut(s) 1146
Kzo9I GATC 6 cut(s) 247, 278, 573, 756, 818, 1146
LmnI GCTCC 4 cut(s) 207, 633, 844, 1520
LweI GCATC 5 cut(s) 249, 988, 1150, 1261, 1464
MaeI CTAG 3 cut(s) 584, 1178, 1588
MaeII ACGT 2 cut(s) 8, 270
MaeIII GTNAC 3 cut(s) 883, 1171, 1218
MalI GATC 6 cut(s) 249, 280, 575, 758, 820, 1148
MboI GATC 6 cut(s) 247, 278, 573, 756, 818, 1146
MboII GAAGA 4 cut(s) 155, 395, 1525, 1552
MflI RGATCY 2 cut(s) 247, 756
MhlI GDGCHC 2 cut(s) 212, 230
MluCI AATT 2 cut(s) 386, 728
MlyI GAGTC 7 cut(s) 170, 333, 442, 795, 924, 1271, 1370
MmeI TCCRAC 4 cut(s) 438, 601, 1023, 1218
MslI CAYNNNNRTG 3 cut(s) 24, 593, 1253
MspA1I CMGCKG 2 cut(s) 407, 1027
MspI CCGG 2 cut(s) 205, 1439
MspR9I CCNGG 2 cut(s) 861, 1050
MvaI CCWGG 2 cut(s) 861, 1050
MvnI CGCG 1 cut(s) 734
MwoI GCNNNNNNNGC 6 cut(s) 491, 874, 877, 962, 1460, 1463
NcoI CCATGG 1 cut(s) 1551
NdeI CATATG 1 cut(s) 1078
NdeII GATC 6 cut(s) 247, 278, 573, 756, 818, 1146
NlaIV GGNNCC 2 cut(s) 209, 1047
NmuCI GTSAC 2 cut(s) 883, 1218
NspI RCATGY 5 cut(s) 46, 832, 1096, 1356, 1563
PciI ACATGT 2 cut(s) 828, 1559
PfeI GAWTC 7 cut(s) 140, 337, 528, 838, 899, 1190, 1302
PflFI GACNNNGTC 1 cut(s) 269
PleI GAGTC 7 cut(s) 170, 332, 442, 794, 924, 1270, 1369
PpsI GAGTC 7 cut(s) 170, 332, 442, 794, 924, 1270, 1369
PscI ACATGT 2 cut(s) 828, 1559
Psp6I CCWGG 2 cut(s) 859, 1048
PspFI CCCAGC 3 cut(s) 410, 773, 1421
PspGI CCWGG 2 cut(s) 859, 1048
PspN4I GGNNCC 2 cut(s) 209, 1047
PspPI GGNCC 1 cut(s) 866
PstI CTGCAG 1 cut(s) 1456
PstNI CAGNNNCTG 1 cut(s) 500
PsuI RGATCY 2 cut(s) 247, 756
PsyI GACNNNGTC 1 cut(s) 269
RsaI GTAC 2 cut(s) 737, 1389
RsaNI GTAC 2 cut(s) 736, 1388
RseI CAYNNNNRTG 3 cut(s) 24, 593, 1253
Sau3AI GATC 6 cut(s) 247, 278, 573, 756, 818, 1146
Sau96I GGNCC 1 cut(s) 866
SchI GAGTC 7 cut(s) 170, 333, 442, 795, 924, 1271, 1370
ScrFI CCNGG 2 cut(s) 861, 1050
SduI GDGCHC 2 cut(s) 212, 230
SfaNI GCATC 5 cut(s) 249, 988, 1150, 1261, 1464
SfcI CTRYAG 2 cut(s) 516, 1452
SmiMI CAYNNNNRTG 3 cut(s) 24, 593, 1253
SmlI CTYRAG 3 cut(s) 54, 347, 620
SmoI CTYRAG 3 cut(s) 54, 347, 620
Sse9I AATT 2 cut(s) 386, 728
SsiI CCGC 4 cut(s) 29, 405, 869, 1027
SspMI CTAG 3 cut(s) 584, 1178, 1588
StyD4I CCNGG 2 cut(s) 859, 1048
StyI CCWWGG 1 cut(s) 1551
TaaI ACNGT 6 cut(s) 26, 65, 456, 906, 1224, 1322
TaiI ACGT 2 cut(s) 11, 273
TaqI TCGA 3 cut(s) 138, 798, 1265
TasI AATT 2 cut(s) 386, 728
TauI GCSGC 2 cut(s) 32, 871
TfiI GAWTC 7 cut(s) 140, 337, 528, 838, 899, 1190, 1302
TscAI CASTG 4 cut(s) 31, 154, 1242, 1325
TseFI GTSAC 2 cut(s) 883, 1218
Tsp45I GTSAC 2 cut(s) 883, 1218
TspDTI ATGAA 5 cut(s) 330, 447, 678, 723, 1530
TspGWI ACGGA 1 cut(s) 1555
TspRI CASTG 4 cut(s) 31, 154, 1242, 1325
Tth111I GACNNNGTC 1 cut(s) 269
XapI RAATTY 2 cut(s) 386, 728
XceI RCATGY 5 cut(s) 46, 832, 1096, 1356, 1563
XmiI GTMKAC 1 cut(s) 60
XspI CTAG 3 cut(s) 584, 1178, 1588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.