Prupe.4G007500_v2.0.a1

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
396663 .. 398565
1903 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G007500.1

Sequence Viewer

Length: 1623 bp
ATGCAAACATCTCAGAAACACCGAAGTACAGCCAGTATCCACAGGTTGTACCACCACCAGCCTATGCAGGACATTGATCCCTCCATTTTCCAAATTTTGGAAAACAGTGTATGTTCAGATACTGGAAGCCAGGGAAACAACGTTTCCTTTCAAACCTACAAGGAAGAGTACTTCACCCTGGAATCATCCCCTGCCACTACTGGTTTTGTAGCCTGTGATTCCCCTTCGGCTGGTAGTGGCTTGTCTAACAGGAGTCCATTTTCATCACAAGGTTCTCAATCATGCTTGTCTGATCAGCGTCATTCCCCTGACAACACTTCTGGATCACCAATAAGTGGGTGCTCCGTAGCTGATGATGGCAATGGATTGAGGTACAAGCTCAGGGAACTGGAAATTTCACTGCTAGGGCCCGAATCAGATATTATTGTTGACAGCCACTATTGTTGTTACAAGAGTGATATGCCAAGGTGGAATAGGAATCAAATGGCTGAAATGACCAACTTAAACCTAAAGGATGTTCTTATTCATTGTGCACGTGCAATAGCTGAAGATGATCTACCCACAGCAAATGGTTTAATGGAAGTTTTGGGGCAAATGGTGTCAGTCTCTGGGGAGCCAATTCAAAGATTGGGTGCTTACATGTTGGAAGGTCTTAGAGCAAGGTTGGAAAGATCAGGGAGTTCAATCTACAAAACCTTAAAATGTGAAGTTCCAACAGGCGCAGAACTTATGTCATACATGTCTGTGCTCTTTCAGATATGCCCATATTGGAGGTTTGCTTACATGTCTGCAAATGTCGTCATTCGGGAAGCCTTGGAAAATGAGCCAAGAATCCACATAATTGATTTTCAGATTGCACAGGGCAGTCAGTGGGTGCCCCTCATCCAAGATCTAGCACGTCAGCCTGGTGGGCCCCCACGTATCCGAATCACTGGTGTTGATGATTCCCAATCAGCTCATGCTCGTGGCGGGGGACTTCATATCGTAGGGCAGAGGCTTTCACAGCTTGCTAATTCATGGAATGTGCCATTTGAGTTTAATAATGCTGCCATGTCTGGTTGTGAGGTTGAATTAGAAAATCTTAGGATTCAACCAGGTGAAGCCATAGCTGTTAATTTTCCATACGTGTTGCACCACATGCCAGATGAGAGTGTAAGCACTCAGAATCACAGAGATCGATTGCTAAGGCTGGTTAAGAGTTTATCACCCAAAGTTATGACACTGGTGGAGCAAGAATCAAACACGAATACTTCCCCATTATTCTCAAGGTTTGTTGAGATGGTAGAGTATTATACAGCCATGTTTGAATCGATTGATGTGGCTCGCCCAAGGGATGACAAACAGCGGATTAGTGCAGAGATGCACTGTGTGGCTAGAGACATAGTGAACATGGTTGCTTGTGAGGGGGCTGAGAGGGTGGAACGACATGAACTTCTGGGGAAGTGGAAGTCAAGGCTAATGATGGATGGGTTTACTCCATACCCATTGAGTCCTAAAGTGACGGAGGCTATCAGGAGTCTGTTGAAGGAATTTAATGGGAATTATAGACTTCAAGAGGCAAATGGGGCTCTCTACCTTGGTTGGAAGCAAAGAGCTTTGGTAACGTCTTCTGCATGGAGGTGA

Protein Analysis

541

Amino Acids

60.45

Weight (kDa)

5.88

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011038)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 874
AccB7I CCANNNNNTGG 2 cut(s) 97, 335
AciI CCGC 2 cut(s) 969, 1345
AclI AACGTT 1 cut(s) 141
AclWI GGATC 2 cut(s) 71, 331
AcsI RAATTY 3 cut(s) 93, 393, 1529
AcuI CTGAAG 1 cut(s) 567
AcvI CACGTG 1 cut(s) 536
AdeI CACNNNGTG 1 cut(s) 1369
AfaI GTAC 4 cut(s) 28, 50, 170, 374
AfiI CCNNNNNNNGG 3 cut(s) 97, 230, 335
AflIII ACRYGT 4 cut(s) 639, 738, 783, 1125
AgsI TTSAA 8 cut(s) 152, 623, 684, 1070, 1091, 1307, 1525, 1553
AjiI CACGTC 1 cut(s) 899
AjnI CCWGG 4 cut(s) 129, 177, 904, 1093
AluBI AGCT 7 cut(s) 350, 379, 545, 956, 1006, 1109, 1595
AluI AGCT 7 cut(s) 350, 379, 545, 956, 1006, 1109, 1595
Alw21I GWGCWC 3 cut(s) 344, 535, 750
Alw26I GTCTC 2 cut(s) 610, 1371
Alw44I GTGCAC 1 cut(s) 531
AlwI GGATC 2 cut(s) 71, 331
AlwNI CAGNNNCTG 2 cut(s) 122, 608
AoxI GGCC 2 cut(s) 407, 911
ApaI GGGCCC 2 cut(s) 411, 915
ApaLI GTGCAC 1 cut(s) 531
ApeKI GCWGC 1 cut(s) 1046
ApoI RAATTY 3 cut(s) 93, 393, 1529
AspLEI GCGC 1 cut(s) 722
AspS9I GGNCC 4 cut(s) 407, 408, 911, 912
AsuHPI GGTGA 4 cut(s) 166, 318, 1109, 1197
BaeGI GKGCMC 4 cut(s) 411, 535, 879, 915
BanI GGYRCC 1 cut(s) 874
BanII GRGCYC 3 cut(s) 411, 915, 1570
BarI GAAGNNNNNNTAC 2 cut(s) 540, 572
BauI CACGAG 1 cut(s) 963
BbrPI CACGTG 1 cut(s) 536
BbsI GAAGAC 1 cut(s) 1599
Bbv12I GWGCWC 3 cut(s) 344, 535, 750
BbvI GCAGC 1 cut(s) 1033
BccI CCATC 4 cut(s) 350, 1273, 1456, 1460
BciT130I CCWGG 4 cut(s) 131, 179, 906, 1095
BciVI GTATCC 2 cut(s) 47, 932
BclI TGATCA 1 cut(s) 292
BcoDI GTCTC 2 cut(s) 610, 1371
BfaI CTAG 3 cut(s) 404, 893, 1374
BfuI GTATCC 2 cut(s) 47, 932
BglI GCCNNNNNGGC 1 cut(s) 910
BglII AGATCT 1 cut(s) 889
BisI GCNGC 1 cut(s) 1047
BlsI GCNGC 1 cut(s) 1048
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 4 cut(s) 131, 179, 906, 1095
BmgBI CACGTC 1 cut(s) 899
BmgT120I GGNCC 4 cut(s) 407, 408, 911, 912
BmiI GGNNCC 5 cut(s) 409, 615, 876, 913, 914
BmrFI CCNGG 4 cut(s) 131, 179, 906, 1095
BmsI GCATC 1 cut(s) 1350
BpiI GAAGAC 1 cut(s) 1599
Bpu10I CCTNAGC 2 cut(s) 380, 1184
BpuEI CTTGAG 1 cut(s) 1249
Bsa29I ATCGAT 2 cut(s) 1177, 1310
BsaAI YACGTR 3 cut(s) 536, 920, 1126
BsaJI CCNNGG 6 cut(s) 130, 177, 464, 813, 1328, 1576
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 230, 335
Bse1I ACTGG 6 cut(s) 33, 127, 205, 393, 937, 1227
Bse3DI GCAATG 1 cut(s) 367
BseBI CCWGG 4 cut(s) 131, 179, 906, 1095
BseCI ATCGAT 2 cut(s) 1177, 1310
BseDI CCNNGG 6 cut(s) 130, 177, 464, 813, 1328, 1576
BseGI GGATG 5 cut(s) 185, 520, 882, 1339, 1471
BseLI CCNNNNNNNGG 3 cut(s) 97, 230, 335
BseMI GCAATG 1 cut(s) 367
BseMII CTCAG 4 cut(s) 26, 394, 1175, 1401
BseNI ACTGG 6 cut(s) 33, 127, 205, 393, 937, 1227
BseSI GKGCMC 4 cut(s) 411, 535, 879, 915
BseXI GCAGC 1 cut(s) 1033
BsgI GTGCAG 1 cut(s) 1374
BshFI GGCC 2 cut(s) 409, 913
BshNI GGYRCC 1 cut(s) 874
BshVI ATCGAT 2 cut(s) 1177, 1310
BsiHKAI GWGCWC 3 cut(s) 344, 535, 750
BslFI GGGAC 1 cut(s) 987
BslI CCNNNNNNNGG 3 cut(s) 97, 230, 335
BsmAI GTCTC 2 cut(s) 610, 1371
BsmFI GGGAC 1 cut(s) 987
BsnI GGCC 2 cut(s) 409, 913
Bsp120I GGGCCC 2 cut(s) 407, 911
Bsp1286I GDGCHC 7 cut(s) 344, 411, 535, 750, 879, 915, 1570
Bsp143I GATC 7 cut(s) 76, 292, 323, 553, 671, 889, 1174
BspACI CCGC 2 cut(s) 969, 1345
BspANI GGCC 2 cut(s) 409, 913
BspCNI CTCAG 4 cut(s) 25, 393, 1174, 1402
BspDI ATCGAT 2 cut(s) 1177, 1310
BspLI GGNNCC 5 cut(s) 409, 615, 876, 913, 914
BspPI GGATC 2 cut(s) 71, 331
BspT107I GGYRCC 1 cut(s) 874
BsrDI GCAATG 1 cut(s) 367
BsrI ACTGG 6 cut(s) 33, 127, 205, 393, 937, 1227
BssECI CCNNGG 6 cut(s) 130, 177, 464, 813, 1328, 1576
BssMI GATC 7 cut(s) 76, 292, 323, 553, 671, 889, 1174
BssSI CACGAG 1 cut(s) 963
BssT1I CCWWGG 4 cut(s) 464, 813, 1328, 1576
Bst2BI CACGAG 1 cut(s) 963
Bst2UI CCWGG 4 cut(s) 131, 179, 906, 1095
Bst4CI ACNGT 2 cut(s) 107, 1367
Bst6I CTCTTC 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 1138
BstBAI YACGTR 3 cut(s) 536, 920, 1126
BstC8I GCNNGC 2 cut(s) 1008, 1324
BstDEI CTNAG 7 cut(s) 12, 380, 653, 1082, 1161, 1184, 1410
BstF5I GGATG 5 cut(s) 185, 520, 882, 1339, 1471
BstHHI GCGC 1 cut(s) 722
BstKTI GATC 7 cut(s) 79, 295, 326, 556, 674, 892, 1177
BstMAI GTCTC 2 cut(s) 610, 1371
BstMBI GATC 7 cut(s) 76, 292, 323, 553, 671, 889, 1174
BstMWI GCNNNNNNNGC 4 cut(s) 910, 1003, 1138, 1565
BstNI CCWGG 4 cut(s) 131, 179, 906, 1095
BstNSI RCATGY 4 cut(s) 643, 742, 787, 1141
BstSCI CCNGG 4 cut(s) 129, 177, 904, 1093
BstSLI GKGCMC 4 cut(s) 411, 535, 879, 915
BstV1I GCAGC 1 cut(s) 1033
BstV2I GAAGAC 1 cut(s) 1599
BstX2I RGATCY 1 cut(s) 889
BstYI RGATCY 1 cut(s) 889
Bsu15I ATCGAT 2 cut(s) 1177, 1310
BsuI GTATCC 2 cut(s) 47, 932
BsuRI GGCC 2 cut(s) 409, 913
BsuTUI ATCGAT 2 cut(s) 1177, 1310
BtrI CACGTC 1 cut(s) 899
BtsCI GGATG 5 cut(s) 185, 520, 882, 1339, 1471
BtsI GCAGTG 1 cut(s) 398
BtsIMutI CAGTG 6 cut(s) 112, 398, 875, 930, 1220, 1363
Cac8I GCNNGC 2 cut(s) 1008, 1324
CaiI CAGNNNCTG 2 cut(s) 122, 608
CfoI GCGC 1 cut(s) 722
Cfr13I GGNCC 4 cut(s) 407, 408, 911, 912
ClaI ATCGAT 2 cut(s) 1177, 1310
CseI GACGC 1 cut(s) 287
CsiI ACCWGGT 1 cut(s) 1093
Csp6I GTAC 4 cut(s) 27, 49, 169, 373
CspCI CAANNNNNGTGG 2 cut(s) 425, 460
CviQI GTAC 4 cut(s) 27, 49, 169, 373
DdeI CTNAG 7 cut(s) 12, 380, 653, 1082, 1161, 1184, 1410
DpnI GATC 7 cut(s) 78, 294, 325, 555, 673, 891, 1176
DpnII GATC 7 cut(s) 76, 292, 323, 553, 671, 889, 1174
DraIII CACNNNGTG 1 cut(s) 1369
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 4 cut(s) 464, 813, 1328, 1576
Eco24I GRGCYC 3 cut(s) 411, 915, 1570
Eco57I CTGAAG 1 cut(s) 567
Eco72I CACGTG 1 cut(s) 536
EcoO109I RGGNCCY 2 cut(s) 407, 912
EcoRII CCWGG 4 cut(s) 129, 177, 904, 1093
EcoT14I CCWWGG 4 cut(s) 464, 813, 1328, 1576
EcoT38I GRGCYC 3 cut(s) 411, 915, 1570
ErhI CCWWGG 4 cut(s) 464, 813, 1328, 1576
FaqI GGGAC 1 cut(s) 987
FauI CCCGC 1 cut(s) 962
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 1047
FokI GGATG 5 cut(s) 172, 527, 869, 1346, 1478
FriOI GRGCYC 3 cut(s) 411, 915, 1570
Fsp4HI GCNGC 1 cut(s) 1047
FspBI CTAG 3 cut(s) 404, 893, 1374
GlaI GCGC 1 cut(s) 721
GluI GCNGC 1 cut(s) 1047
HaeIII GGCC 2 cut(s) 409, 913
HgaI GACGC 1 cut(s) 287
HhaI GCGC 1 cut(s) 722
Hin6I GCGC 1 cut(s) 720
HinP1I GCGC 1 cut(s) 720
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HphI GGTGA 4 cut(s) 166, 318, 1109, 1197
Hpy166II GTNNAC 4 cut(s) 430, 533, 1387, 1473
Hpy188I TCNGA 8 cut(s) 15, 118, 292, 418, 756, 852, 926, 1164
Hpy188III TCNNGA 4 cut(s) 321, 806, 1513, 1553
Hpy8I GTNNAC 4 cut(s) 430, 533, 1387, 1473
HpyAV CCTTC 3 cut(s) 234, 641, 1519
HpyCH4III ACNGT 2 cut(s) 107, 1367
HpyCH4IV ACGT 6 cut(s) 141, 535, 898, 919, 1125, 1604
HpyF10VI GCNNNNNNNGC 4 cut(s) 910, 1003, 1138, 1565
HpyF3I CTNAG 7 cut(s) 12, 380, 653, 1082, 1161, 1184, 1410
HpySE526I ACGT 6 cut(s) 141, 535, 898, 919, 1125, 1604
HspAI GCGC 1 cut(s) 720
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 7 cut(s) 76, 292, 323, 553, 671, 889, 1174
LmnI GCTCC 3 cut(s) 347, 613, 1228
Lsp1109I GCAGC 1 cut(s) 1033
LweI GCATC 1 cut(s) 1350
MabI ACCWGGT 1 cut(s) 1093
MaeI CTAG 3 cut(s) 404, 893, 1374
MaeII ACGT 6 cut(s) 141, 535, 898, 919, 1125, 1604
MaeIII GTNAC 3 cut(s) 446, 1498, 1600
MalI GATC 7 cut(s) 78, 294, 325, 555, 673, 891, 1176
MboI GATC 7 cut(s) 76, 292, 323, 553, 671, 889, 1174
MboII GAAGA 3 cut(s) 176, 560, 1599
MflI RGATCY 1 cut(s) 889
MhlI GDGCHC 7 cut(s) 344, 411, 535, 750, 879, 915, 1570
MluCI AATT 9 cut(s) 93, 393, 618, 840, 1012, 1070, 1114, 1529, 1540
MlyI GAGTC 3 cut(s) 262, 1498, 1525
MmeI TCCRAC 4 cut(s) 624, 645, 737, 1562
MseI TTAA 7 cut(s) 503, 575, 698, 1038, 1113, 1194, 1533
MslI CAYNNNNRTG 3 cut(s) 743, 963, 1618
MspA1I CMGCKG 1 cut(s) 1345
MspR9I CCNGG 4 cut(s) 131, 179, 906, 1095
MvaI CCWGG 4 cut(s) 131, 179, 906, 1095
MwoI GCNNNNNNNGC 4 cut(s) 910, 1003, 1138, 1565
NdeII GATC 7 cut(s) 76, 292, 323, 553, 671, 889, 1174
NlaIV GGNNCC 5 cut(s) 409, 615, 876, 913, 914
NmuCI GTSAC 1 cut(s) 1498
NspI RCATGY 4 cut(s) 643, 742, 787, 1141
PciI ACATGT 3 cut(s) 639, 738, 783
PflMI CCANNNNNTGG 2 cut(s) 97, 335
PkrI GCNGC 1 cut(s) 1048
PleI GAGTC 3 cut(s) 261, 1497, 1524
PmaCI CACGTG 1 cut(s) 536
PmlI CACGTG 1 cut(s) 536
PpsI GAGTC 3 cut(s) 261, 1497, 1524
Ppu21I YACGTR 3 cut(s) 536, 920, 1126
PscI ACATGT 3 cut(s) 639, 738, 783
Psp1406I AACGTT 1 cut(s) 141
Psp6I CCWGG 4 cut(s) 129, 177, 904, 1093
PspCI CACGTG 1 cut(s) 536
PspGI CCWGG 4 cut(s) 129, 177, 904, 1093
PspN4I GGNNCC 5 cut(s) 409, 615, 876, 913, 914
PspOMI GGGCCC 2 cut(s) 407, 911
PspPI GGNCC 4 cut(s) 407, 408, 911, 912
PstNI CAGNNNCTG 2 cut(s) 122, 608
PsuI RGATCY 1 cut(s) 889
RsaI GTAC 4 cut(s) 28, 50, 170, 374
RsaNI GTAC 4 cut(s) 27, 49, 169, 373
RseI CAYNNNNRTG 3 cut(s) 743, 963, 1618
SaqAI TTAA 7 cut(s) 503, 575, 698, 1038, 1113, 1194, 1533
SatI GCNGC 1 cut(s) 1047
Sau3AI GATC 7 cut(s) 76, 292, 323, 553, 671, 889, 1174
Sau96I GGNCC 4 cut(s) 407, 408, 911, 912
ScaI AGTACT 1 cut(s) 170
SchI GAGTC 3 cut(s) 262, 1498, 1525
ScrFI CCNGG 4 cut(s) 131, 179, 906, 1095
SduI GDGCHC 7 cut(s) 344, 411, 535, 750, 879, 915, 1570
SexAI ACCWGGT 1 cut(s) 1093
SfaNI GCATC 1 cut(s) 1350
SmiMI CAYNNNNRTG 3 cut(s) 743, 963, 1618
SmlI CTYRAG 1 cut(s) 1264
SmoI CTYRAG 1 cut(s) 1264
Sse9I AATT 9 cut(s) 93, 393, 618, 840, 1012, 1070, 1114, 1529, 1540
SsiI CCGC 2 cut(s) 969, 1345
SspMI CTAG 3 cut(s) 404, 893, 1374
StyD4I CCNGG 4 cut(s) 129, 177, 904, 1093
StyI CCWWGG 4 cut(s) 464, 813, 1328, 1576
TaaI ACNGT 2 cut(s) 107, 1367
TaiI ACGT 6 cut(s) 144, 538, 901, 922, 1128, 1607
TaqI TCGA 2 cut(s) 1177, 1310
TasI AATT 9 cut(s) 93, 393, 618, 840, 1012, 1070, 1114, 1529, 1540
TatI WGTACW 2 cut(s) 26, 168
Tru1I TTAA 7 cut(s) 503, 575, 698, 1038, 1113, 1194, 1533
Tru9I TTAA 7 cut(s) 503, 575, 698, 1038, 1113, 1194, 1533
TscAI CASTG 6 cut(s) 112, 405, 875, 937, 1227, 1370
TseFI GTSAC 1 cut(s) 1498
TseI GCWGC 1 cut(s) 1046
Tsp45I GTSAC 1 cut(s) 1498
TspDTI ATGAA 5 cut(s) 252, 515, 968, 1005, 1443
TspGWI ACGGA 2 cut(s) 334, 1517
TspRI CASTG 6 cut(s) 112, 405, 875, 937, 1227, 1370
Van91I CCANNNNNTGG 2 cut(s) 97, 335
VneI GTGCAC 1 cut(s) 531
XapI RAATTY 3 cut(s) 93, 393, 1529
XceI RCATGY 4 cut(s) 643, 742, 787, 1141
XspI CTAG 3 cut(s) 404, 893, 1374
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.