Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00332

Orthogroup ID

OG0011038

Physical Location & Seq

Genomic Coordinates Forward (+)

67801 .. 68878

Gene Structure 1078 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G008760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGATACCCAAGTTTAACCTAAAAGATGTTCTCATTCGCTGTGCTCATGCAGTATGTGAGGAGGATATGTTGACAGCGGTGAATTGCATGGAAGTTTTGGGGGATATGGTGTCAATCTCTGGAGAGCCAATGCAAAGATTGGGTGCTTACATGCTGGAAGGTCTTCGGGCAAAAGCAACAAGCGAGGAACTTTTGACATGCATGTCTCTTCTATATCAAATATGCCCTTATTGGAAGTTTGCTTACATGTCTTCACATGTTGTCATTAAAGAGGCCTTGATGCATGAGCCAAGAATCCACATCATTGATTTTCAGATTGAACACGGTAGACAATGGGTGTCTCTGATCCAGGAATTTGCATGCCGGCCTGGTGGGCCTCGACTTATCCGAATTACAGGCGTTGATGATGCCCAATCAAACTATGATCGTGGTGAGGGACTTCATATCGTGGGAAAAAGGCTTTCAGATGTGGCTGCGAAATACAATATGCCATTTGAGTTTTATGCTGCTGGCATGACTGTTTGCGATGTTGAACTAGAGAATCTCAGAATTCAAGATAGAGAAGCCATAGCTGTTACTTTTCCATATGTGTTGCAACACATACCATATGAGAGTGTGAGTACCGAAAATCACAGAGACCGTCTACTAAGGCTGGTTAGGAGTTTATCACCCAAAATTATGACTATCGCGGAACAAGAATCAAACACCAACACTTCTGCATTCTACCAGAGGTTTGTTGAGTCCGTAGATTATTATACAGCAATGTTTGAATCGATTGACGCAGGTTGTCCGAGAGATAGCAAACAGCGGATCAGTACAGAGATGCACTGTGTGGCTAGAAACATAGTCAACATGATTGCTTGCGAGGGGGCTGAGAGGGTGGAACGGCATGAACTTCTTCTGACGTGGAGGTCAAGGTTAAAGATGGCCGGGTTTACTCCATGCCAGTTTGGTCCTTCAGGGATAGGAGCCATCAAGAACAGAGCCGTCTCAAACTTTTCGGAGGCCCTGTGCGAAAGTTCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

342

Amino Acids

38.83

Weight (kDa)

5.97

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	7 - 319	7.3e-100	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17230 AT4G17230
fragaria_vesca	FvH4_3g00670 FvH4_3g00670 FvH4_3g00670
malus_domestica	MD05G1360300.v1.1 MD10G1336100.v1.1
prunus_persica	Prupe.4G007500_v2.0.a1
pyrus_communis	pycom05g32540 pycom10g28560
rosa_chinensis	RchiOBHm_Chr5g0000891
rosa_laevigata	RLG00000030904
rosa_roxburghii	Rroxscaffold_1G00075360
rosa_rugosa	Rorug04G0387500
rosa_samantha	Rh5AG007200 Rh5BG009300 Rh5CG007900 Rh5DG007800
rosa_wichuraiana	Rw0G008760 Rw5G000750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	202, 910
Acc36I	ACCTGC	1 cut(s)	773
AccI	GTMKAC	2 cut(s)	328, 643
AccII	CGCG	1 cut(s)	689
AciI	CCGC	3 cut(s)	77, 689, 808
AclWI	GGATC	2 cut(s)	340, 818
AcoI	YGGCCR	1 cut(s)	927
AcsI	RAATTY	2 cut(s)	353, 549
AcuI	CTGAAG	1 cut(s)	942
AdeI	CACNNNGTG	1 cut(s)	832
AfaI	GTAC	2 cut(s)	622, 817
AflIII	ACRYGT	2 cut(s)	246, 256
AgsI	TTSAA	5 cut(s)	320, 533, 554, 770, 1023
AjiI	CACGTC	1 cut(s)	906
AjnI	CCWGG	2 cut(s)	348, 367
AluBI	AGCT	1 cut(s)	572
AluI	AGCT	1 cut(s)	572
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	4 cut(s)	210, 345, 630, 994
AlwI	GGATC	2 cut(s)	340, 818
AoxI	GGCC	5 cut(s)	273, 365, 374, 927, 1005
ApeKI	GCWGC	2 cut(s)	473, 506
ApoI	RAATTY	2 cut(s)	353, 549
Asp700I	GAANNNNTTC	2 cut(s)	162, 897
AspS9I	GGNCC	3 cut(s)	374, 953, 1006
AsuC2I	CCSGG	1 cut(s)	931
AsuHPI	GGTGA	3 cut(s)	91, 443, 660
AvaII	GGWCC	1 cut(s)	953
BaeI	ACNNNNGTAYC	1 cut(s)	29
BarI	GAAGNNNNNNTAC	2 cut(s)	227, 259
BbsI	GAAGAC	2 cut(s)	155, 243
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	2 cut(s)	460, 493
BccI	CCATC	2 cut(s)	919, 980
BceAI	ACGGC	2 cut(s)	902, 971
BciT130I	CCWGG	2 cut(s)	350, 369
BcnI	CCSGG	1 cut(s)	931
BcoDI	GTCTC	4 cut(s)	210, 345, 630, 994
BfaI	CTAG	2 cut(s)	536, 837
BfuAI	ACCTGC	1 cut(s)	773
BglI	GCCNNNNNGGC	1 cut(s)	373
BisI	GCNGC	2 cut(s)	474, 507
BlsI	GCNGC	2 cut(s)	475, 508
Bme1390I	CCNGG	3 cut(s)	350, 369, 931
Bme18I	GGWCC	1 cut(s)	953
BmgBI	CACGTC	1 cut(s)	906
BmgT120I	GGNCC	3 cut(s)	374, 953, 1006
BmiI	GGNNCC	1 cut(s)	970
BmrFI	CCNGG	3 cut(s)	350, 369, 931
BmsI	GCATC	3 cut(s)	270, 397, 813
BpiI	GAAGAC	2 cut(s)	155, 243
BpmI	CTGGAG	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	931
Bsa29I	ATCGAT	1 cut(s)	773
BsaI	GGTCTC	1 cut(s)	630
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 995, 1025
Bse118I	RCCGGY	1 cut(s)	363
Bse1I	ACTGG	1 cut(s)	946
Bse3DI	GCAATG	1 cut(s)	768
BseBI	CCWGG	2 cut(s)	350, 369
BseCI	ATCGAT	1 cut(s)	773
BseMI	GCAATG	1 cut(s)	768
BseMII	CTCAG	2 cut(s)	559, 864
BseNI	ACTGG	1 cut(s)	946
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	460, 493
Bsh1236I	CGCG	1 cut(s)	689
BshFI	GGCC	5 cut(s)	275, 367, 376, 929, 1007
BshVI	ATCGAT	1 cut(s)	773
BsiHKAI	GWGCWC	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	364, 930
BslFI	GGGAC	1 cut(s)	450
BsmAI	GTCTC	4 cut(s)	210, 345, 630, 994
BsmBI	CGTCTC	1 cut(s)	994
BsmFI	GGGAC	1 cut(s)	450
BsmI	GAATGC	1 cut(s)	719
BsnI	GGCC	5 cut(s)	275, 367, 376, 929, 1007
Bso31I	GGTCTC	1 cut(s)	630
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	345, 424, 810
BspACI	CCGC	3 cut(s)	77, 689, 808
BspANI	GGCC	5 cut(s)	275, 367, 376, 929, 1007
BspCNI	CTCAG	2 cut(s)	558, 865
BspDI	ATCGAT	1 cut(s)	773
BspFNI	CGCG	1 cut(s)	689
BspLI	GGNNCC	1 cut(s)	970
BspMI	ACCTGC	1 cut(s)	773
BspPI	GGATC	2 cut(s)	340, 818
BspTNI	GGTCTC	1 cut(s)	630
BsrDI	GCAATG	1 cut(s)	768
BsrFI	RCCGGY	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	946
BssAI	RCCGGY	1 cut(s)	363
BssMI	GATC	3 cut(s)	345, 424, 810
Bst2UI	CCWGG	2 cut(s)	350, 369
Bst4CI	ACNGT	4 cut(s)	326, 520, 641, 830
Bst6I	CTCTTC	1 cut(s)	213
BstC8I	GCNNGC	4 cut(s)	361, 365, 511, 862
BstDEI	CTNAG	3 cut(s)	545, 647, 873
BstFNI	CGCG	1 cut(s)	689
BstKTI	GATC	3 cut(s)	348, 427, 813
BstMAI	GTCTC	4 cut(s)	210, 345, 630, 994
BstMBI	GATC	3 cut(s)	345, 424, 810
BstMWI	GCNNNNNNNGC	1 cut(s)	373
BstNI	CCWGG	2 cut(s)	350, 369
BstNSI	RCATGY	6 cut(s)	154, 201, 205, 250, 260, 363
BstSCI	CCNGG	3 cut(s)	348, 367, 929
BstUI	CGCG	1 cut(s)	689
BstV1I	GCAGC	2 cut(s)	460, 493
BstV2I	GAAGAC	2 cut(s)	155, 243
Bsu15I	ATCGAT	1 cut(s)	773
BsuRI	GGCC	5 cut(s)	275, 367, 376, 929, 1007
BsuTUI	ATCGAT	1 cut(s)	773
BtgZI	GCGATG	1 cut(s)	540
BtrI	CACGTC	1 cut(s)	906
BtsIMutI	CAGTG	1 cut(s)	826
BveI	ACCTGC	1 cut(s)	773
Cac8I	GCNNGC	4 cut(s)	361, 365, 511, 862
Cfr10I	RCCGGY	1 cut(s)	363
Cfr13I	GGNCC	3 cut(s)	374, 953, 1006
ClaI	ATCGAT	1 cut(s)	773
CseI	GACGC	1 cut(s)	788
Csp6I	GTAC	2 cut(s)	621, 816
CviQI	GTAC	2 cut(s)	621, 816
DdeI	CTNAG	3 cut(s)	545, 647, 873
DpnI	GATC	3 cut(s)	347, 426, 812
DpnII	GATC	3 cut(s)	345, 424, 810
DraIII	CACNNNGTG	1 cut(s)	832
DrdI	GACNNNNNNGTC	2 cut(s)	202, 910
DseDI	GACNNNNNNGTC	2 cut(s)	202, 910
EaeI	YGGCCR	1 cut(s)	927
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	275
Eco31I	GGTCTC	1 cut(s)	630
Eco47I	GGWCC	1 cut(s)	953
Eco57I	CTGAAG	1 cut(s)	942
EcoO109I	RGGNCCY	1 cut(s)	1006
EcoRI	GAATTC	1 cut(s)	549
EcoRII	CCWGG	2 cut(s)	348, 367
EcoT22I	ATGCAT	2 cut(s)	203, 285
Esp3I	CGTCTC	1 cut(s)	994
FaqI	GGGAC	1 cut(s)	450
FauNDI	CATATG	2 cut(s)	586, 607
FblI	GTMKAC	2 cut(s)	328, 643
Fnu4HI	GCNGC	2 cut(s)	474, 507
Fsp4HI	GCNGC	2 cut(s)	474, 507
FspBI	CTAG	2 cut(s)	536, 837
GluI	GCNGC	2 cut(s)	474, 507
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	5 cut(s)	275, 367, 376, 929, 1007
HapII	CCGG	2 cut(s)	364, 930
HgaI	GACGC	1 cut(s)	788
HincII	GTYRAC	2 cut(s)	72, 850
HindII	GTYRAC	2 cut(s)	72, 850
HinfI	GANTC	5 cut(s)	294, 541, 698, 740, 770
HpaII	CCGG	2 cut(s)	364, 930
HphI	GGTGA	3 cut(s)	91, 443, 660
Hpy166II	GTNNAC	5 cut(s)	72, 329, 644, 850, 936
Hpy188I	TCNGA	8 cut(s)	315, 345, 389, 466, 548, 792, 903, 1003
Hpy188III	TCNNGA	3 cut(s)	120, 554, 976
Hpy8I	GTNNAC	5 cut(s)	72, 329, 644, 850, 936
HpyAV	CCTTC	2 cut(s)	152, 966
HpyCH4III	ACNGT	4 cut(s)	326, 520, 641, 830
HpyCH4IV	ACGT	1 cut(s)	905
HpyCH4V	TGCA	9 cut(s)	50, 87, 133, 201, 283, 359, 595, 719, 826
HpyF10VI	GCNNNNNNNGC	1 cut(s)	373
HpyF3I	CTNAG	3 cut(s)	545, 647, 873
HpySE526I	ACGT	1 cut(s)	905
KroI	GCCGGC	1 cut(s)	363
KroNI	GCCGGC	1 cut(s)	365
Kzo9I	GATC	3 cut(s)	345, 424, 810
LmnI	GCTCC	1 cut(s)	968
Lsp1109I	GCAGC	2 cut(s)	460, 493
LweI	GCATC	3 cut(s)	270, 397, 813
MaeI	CTAG	2 cut(s)	536, 837
MaeII	ACGT	1 cut(s)	905
MaeIII	GTNAC	1 cut(s)	574
MalI	GATC	3 cut(s)	347, 426, 812
MboI	GATC	3 cut(s)	345, 424, 810
MboII	GAAGA	4 cut(s)	155, 200, 243, 890
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	5 cut(s)	82, 353, 390, 549, 675
MlyI	GAGTC	1 cut(s)	749
Mph1103I	ATGCAT	2 cut(s)	203, 285
MroNI	GCCGGC	1 cut(s)	363
MroXI	GAANNNNTTC	2 cut(s)	162, 897
MseI	TTAA	3 cut(s)	15, 267, 920
MspA1I	CMGCKG	2 cut(s)	77, 808
MspI	CCGG	2 cut(s)	364, 930
MspR9I	CCNGG	3 cut(s)	350, 369, 931
Mva1269I	GAATGC	1 cut(s)	719
MvaI	CCWGG	2 cut(s)	350, 369
MvnI	CGCG	1 cut(s)	689
MwoI	GCNNNNNNNGC	1 cut(s)	373
NaeI	GCCGGC	1 cut(s)	365
NciI	CCSGG	1 cut(s)	931
NdeI	CATATG	2 cut(s)	586, 607
NdeII	GATC	3 cut(s)	345, 424, 810
NgoMIV	GCCGGC	1 cut(s)	363
NlaIV	GGNNCC	1 cut(s)	970
NsiI	ATGCAT	2 cut(s)	203, 285
NspI	RCATGY	6 cut(s)	154, 201, 205, 250, 260, 363
PaeI	GCATGC	1 cut(s)	363
PceI	AGGCCT	1 cut(s)	275
PciI	ACATGT	2 cut(s)	246, 256
PcsI	WCGNNNNNNNCGW	1 cut(s)	385
PctI	GAATGC	1 cut(s)	719
PdiI	GCCGGC	1 cut(s)	365
PdmI	GAANNNNTTC	2 cut(s)	162, 897
PfeI	GAWTC	4 cut(s)	294, 541, 698, 770
PfoI	TCCNGGA	1 cut(s)	348
PkrI	GCNGC	2 cut(s)	475, 508
PleI	GAGTC	1 cut(s)	748
PpsI	GAGTC	1 cut(s)	748
PscI	ACATGT	2 cut(s)	246, 256
Psp6I	CCWGG	2 cut(s)	348, 367
PspGI	CCWGG	2 cut(s)	348, 367
PspN4I	GGNNCC	1 cut(s)	970
PspPI	GGNCC	3 cut(s)	374, 953, 1006
RsaI	GTAC	2 cut(s)	622, 817
RsaNI	GTAC	2 cut(s)	621, 816
SaqAI	TTAA	3 cut(s)	15, 267, 920
SatI	GCNGC	2 cut(s)	474, 507
Sau3AI	GATC	3 cut(s)	345, 424, 810
Sau96I	GGNCC	3 cut(s)	374, 953, 1006
SchI	GAGTC	1 cut(s)	749
ScrFI	CCNGG	3 cut(s)	350, 369, 931
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	8 cut(s)	21, 163, 574, 734, 787, 908, 914, 920
SfaNI	GCATC	3 cut(s)	270, 397, 813
SfiI	GGCCNNNNNGGCC	1 cut(s)	373
SinI	GGWCC	1 cut(s)	953
SphI	GCATGC	1 cut(s)	363
Sse9I	AATT	5 cut(s)	82, 353, 390, 549, 675
SseBI	AGGCCT	1 cut(s)	275
SsiI	CCGC	3 cut(s)	77, 689, 808
SspMI	CTAG	2 cut(s)	536, 837
StuI	AGGCCT	1 cut(s)	275
StyD4I	CCNGG	3 cut(s)	348, 367, 929
TaaI	ACNGT	4 cut(s)	326, 520, 641, 830
TaiI	ACGT	1 cut(s)	908
TaqI	TCGA	2 cut(s)	379, 773
TasI	AATT	5 cut(s)	82, 353, 390, 549, 675
TatI	WGTACW	1 cut(s)	815
TfiI	GAWTC	4 cut(s)	294, 541, 698, 770
Tru1I	TTAA	3 cut(s)	15, 267, 920
Tru9I	TTAA	3 cut(s)	15, 267, 920
TscAI	CASTG	1 cut(s)	833
TseI	GCWGC	2 cut(s)	473, 506
TspDTI	ATGAA	2 cut(s)	431, 906
TspGWI	ACGGA	1 cut(s)	733
TspRI	CASTG	1 cut(s)	833
VpaK11BI	GGWCC	1 cut(s)	953
XapI	RAATTY	2 cut(s)	353, 549
XceI	RCATGY	6 cut(s)	154, 201, 205, 250, 260, 363
XmiI	GTMKAC	2 cut(s)	328, 643
XmnI	GAANNNNTTC	2 cut(s)	162, 897
XspI	CTAG	2 cut(s)	536, 837
Zsp2I	ATGCAT	2 cut(s)	203, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.