MD10G1336100.v1.1

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
41266090 .. 41268919
2830 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1336100.v1.1.491

Sequence Viewer

Length: 1377 bp
ATGAAAACATCTCAGCAACACCGAGGTTCTCACTCGTGCTTGTCTGATCAGCACCATTCGTCTGGCAACAATTATGGATCACCAACAAGTGGGTGCTCCGTAGTTGAGGATGACAACGAGTTCAAGTACAGGCTCAGGGAAGTGGAAGTTTCATTGCTAGGGCCCGACTCGGATATTGTTGACAGCCACTTTTGTTGTCACAAGAGTGGTATGGCAAGGTGGAGCCAGAGTCAAATAGCCACAATGATACCTAAGTTAAACCTAAAAGATGTTCTCTTGTTCTGTGCACACGCGATATCCGAAGACGATTTATACACTGCAACAAGCTGGATGGAAGTTTTGGGGCAAATGGTGTCAGTCTCTGGGGAGCCAATGCAAAGACTGGGGGCTTACATGTTGGAAGGTCTTAGGGCAAAGTTGGAAAGATCAGGGAGTTTAATCTACAAAGCCCTAAAATGTGAAGTTCCTACAAGCTCGCAACTTATGTCATACATGTCTGTCCTCTATGATATCTGCCCATATTGGAAGTTTGCTTACACGTCTGCAAATGTAGTCATTCGGGAAGCGTTGGAGAATGAGCCAAGAATCCACATAATTGATTTTCAGATTGCACAGGGCAGTCAGTGGGTTCCCCTCATCCAAGATCTAGCTCGCCGGCCCGGTGGCCCCCCATGTATCCGGATCACAGGTGTTGATGATACTCAATCAGCCCATGCTCGTGGCGGGGGACTTCATATCGTGGGGGAGAGGCTTTCAAAGCTTGCGGCGTCATGCTATGTGCCATTTGAGTTTAATGCTGCTGCCAGATGTGGTTCTCAGGTTGAACTTCATAATCTCAGGATTCAACCTGGGGAAGCCATAGCGGTTAATTTTCCATACGTGTTGCACCACATGCCCGATGAGAGTGTGAGCACTGAGAATCACAGAGATCGTTTGTTAAGGCTGGTTAAGAGTTTATCGCCCAAAGTTATGACACTTGTGGAACAAGAATCCAACACCAACACTTCCCCATTCTTCTCAAGGTTTCGTGAAATGGTAGATTATTATACAGCAATGTTTGAATCAATTGATGTGGCTCGGCCAAGAGACGACAAACAGAGGATCAACGCAGAGGCGCACTGTGTGGCTAGAGACATCGTGAACATGATTGCTTGTGAAGGGGCCGAGAGGGTGGAACGCCATGAACCTTTCGGGAAGTGGAGGTCAAGGCTAATGATGGATGGATTTACTCCATACCCGCTGAGTCCTAAAGTGACGGAGGCTATCAGGATTCTGTTGAAGGAATTTAACGAGAACTTCAGAATTCAAGAAGCAGACGGGGCTCTCTACCTCGGTTGGAAGCAAAGAGCCATGGTAACGTCTTCCGCATGGAGGTGA

Protein Analysis

459

Amino Acids

51.75

Weight (kDa)

6.36

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 89 - 458 2.6e-131 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011038)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 89
AccII CGCG 1 cut(s) 293
AccIII TCCGGA 1 cut(s) 678
AciI CCGC 5 cut(s) 723, 764, 863, 1238, 1365
AclWI GGATC 3 cut(s) 85, 689, 1109
AcoI YGGCCR 1 cut(s) 1079
AcsI RAATTY 2 cut(s) 1283, 1302
AcuI CTGAAG 1 cut(s) 1282
AcyI GRCGYC 1 cut(s) 767
AdeI CACNNNGTG 1 cut(s) 1123
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 2 cut(s) 89, 1371
AflIII ACRYGT 4 cut(s) 393, 492, 537, 879
AgsI TTSAA 7 cut(s) 124, 756, 824, 845, 1061, 1279, 1307
AjiI CACGTC 1 cut(s) 540
AjnI CCWGG 1 cut(s) 847
AleI CACNNNNGTG 1 cut(s) 204
AluBI AGCT 4 cut(s) 327, 474, 650, 760
AluI AGCT 4 cut(s) 327, 474, 650, 760
Alw21I GWGCWC 3 cut(s) 98, 289, 914
Alw26I GTCTC 3 cut(s) 364, 1080, 1125
Alw44I GTGCAC 1 cut(s) 285
AlwI GGATC 3 cut(s) 85, 689, 1109
AlwNI CAGNNNCTG 1 cut(s) 362
Aor13HI TCCGGA 1 cut(s) 678
AoxI GGCC 5 cut(s) 161, 656, 664, 1079, 1161
ApaI GGGCCC 1 cut(s) 165
ApaLI GTGCAC 1 cut(s) 285
ApeKI GCWGC 2 cut(s) 797, 800
ApoI RAATTY 2 cut(s) 1283, 1302
AspLEI GCGC 1 cut(s) 1117
AspS9I GGNCC 5 cut(s) 161, 162, 657, 665, 1161
AsuC2I CCSGG 1 cut(s) 660
AsuHPI GGTGA 1 cut(s) 72
BaeGI GKGCMC 2 cut(s) 165, 289
BaeI ACNNNNGTAYC 2 cut(s) 239, 272
BanII GRGCYC 2 cut(s) 165, 1324
BarI GAAGNNNNNNTAC 2 cut(s) 518, 550
BauI CACGAG 2 cut(s) 34, 717
BbsI GAAGAC 2 cut(s) 309, 1353
Bbv12I GWGCWC 3 cut(s) 98, 289, 914
BbvI GCAGC 2 cut(s) 784, 787
BccI CCATC 3 cut(s) 325, 1210, 1214
BciT130I CCWGG 1 cut(s) 849
BciVI GTATCC 1 cut(s) 686
BclI TGATCA 1 cut(s) 46
BcnI CCSGG 1 cut(s) 660
BcoDI GTCTC 3 cut(s) 364, 1080, 1125
BfaI CTAG 3 cut(s) 158, 647, 1128
BfuI GTATCC 1 cut(s) 686
BglII AGATCT 1 cut(s) 643
BisI GCNGC 3 cut(s) 765, 798, 801
BlsI GCNGC 3 cut(s) 766, 799, 802
Bme1390I CCNGG 2 cut(s) 660, 849
BmgBI CACGTC 1 cut(s) 540
BmgT120I GGNCC 5 cut(s) 161, 162, 657, 665, 1161
BmiI GGNNCC 6 cut(s) 163, 224, 369, 630, 667, 1162
BmrFI CCNGG 2 cut(s) 660, 849
BmrI ACTGGG 1 cut(s) 392
BmuI ACTGGG 1 cut(s) 392
BpiI GAAGAC 2 cut(s) 309, 1353
Bpu10I CCTNAGC 1 cut(s) 134
BpuEI CTTGAG 1 cut(s) 1003
BpuMI CCSGG 1 cut(s) 660
BsaAI YACGTR 1 cut(s) 880
BsaHI GRCGYC 1 cut(s) 767
BsaJI CCNNGG 4 cut(s) 22, 848, 1330, 1350
BsaWI WCCGGW 1 cut(s) 678
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 1371
Bse118I RCCGGY 1 cut(s) 654
Bse1I ACTGG 1 cut(s) 387
Bse3DI GCAATG 2 cut(s) 152, 1059
BseAI TCCGGA 1 cut(s) 678
BseBI CCWGG 1 cut(s) 849
BseDI CCNNGG 4 cut(s) 22, 848, 1330, 1350
BseGI GGATG 4 cut(s) 115, 336, 636, 1225
BseLI CCNNNNNNNGG 2 cut(s) 89, 1371
BseMI GCAATG 2 cut(s) 152, 1059
BseMII CTCAG 6 cut(s) 26, 148, 830, 850, 906, 1232
BseNI ACTGG 1 cut(s) 387
BseSI GKGCMC 2 cut(s) 165, 289
BseXI GCAGC 2 cut(s) 784, 787
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 5 cut(s) 163, 658, 666, 1081, 1163
BsiHKAI GWGCWC 3 cut(s) 98, 289, 914
BsiSI CCGG 3 cut(s) 655, 660, 679
BslFI GGGAC 1 cut(s) 741
BslI CCNNNNNNNGG 2 cut(s) 89, 1371
BsmAI GTCTC 3 cut(s) 364, 1080, 1125
BsmBI CGTCTC 1 cut(s) 1080
BsmFI GGGAC 1 cut(s) 741
BsnI GGCC 5 cut(s) 163, 658, 666, 1081, 1163
Bsp120I GGGCCC 1 cut(s) 161
Bsp1286I GDGCHC 5 cut(s) 98, 165, 289, 914, 1324
Bsp13I TCCGGA 1 cut(s) 678
Bsp143I GATC 7 cut(s) 46, 77, 425, 643, 681, 928, 1101
Bsp19I CCATGG 1 cut(s) 1350
BspACI CCGC 5 cut(s) 723, 764, 863, 1238, 1365
BspANI GGCC 5 cut(s) 163, 658, 666, 1081, 1163
BspCNI CTCAG 6 cut(s) 25, 147, 829, 849, 907, 1233
BspEI TCCGGA 1 cut(s) 678
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 6 cut(s) 163, 224, 369, 630, 667, 1162
BspPI GGATC 3 cut(s) 85, 689, 1109
BsrDI GCAATG 2 cut(s) 152, 1059
BsrFI RCCGGY 1 cut(s) 654
BsrI ACTGG 1 cut(s) 387
BssAI RCCGGY 1 cut(s) 654
BssECI CCNNGG 4 cut(s) 22, 848, 1330, 1350
BssMI GATC 7 cut(s) 46, 77, 425, 643, 681, 928, 1101
BssNI GRCGYC 1 cut(s) 767
BssSI CACGAG 2 cut(s) 34, 717
BssT1I CCWWGG 1 cut(s) 1350
Bst2BI CACGAG 2 cut(s) 34, 717
Bst2UI CCWGG 1 cut(s) 849
Bst4CI ACNGT 1 cut(s) 1121
BstACI GRCGYC 1 cut(s) 767
BstAPI GCANNNNNTGC 1 cut(s) 892
BstBAI YACGTR 1 cut(s) 880
BstC8I GCNNGC 4 cut(s) 476, 652, 656, 762
BstDEI CTNAG 8 cut(s) 12, 134, 252, 407, 816, 836, 915, 1241
BstDSI CCRYGG 1 cut(s) 1350
BstF5I GGATG 4 cut(s) 115, 336, 636, 1225
BstFNI CGCG 1 cut(s) 293
BstHHI GCGC 1 cut(s) 1117
BstKTI GATC 7 cut(s) 49, 80, 428, 646, 684, 931, 1104
BstMAI GTCTC 3 cut(s) 364, 1080, 1125
BstMBI GATC 7 cut(s) 46, 77, 425, 643, 681, 928, 1101
BstMWI GCNNNNNNNGC 3 cut(s) 757, 892, 1319
BstNI CCWGG 1 cut(s) 849
BstNSI RCATGY 3 cut(s) 397, 496, 895
BstSCI CCNGG 2 cut(s) 658, 847
BstSLI GKGCMC 2 cut(s) 165, 289
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 2 cut(s) 784, 787
BstV2I GAAGAC 2 cut(s) 309, 1353
BstX2I RGATCY 1 cut(s) 643
BstXI CCANNNNNNTGG 2 cut(s) 62, 719
BstYI RGATCY 1 cut(s) 643
BsuI GTATCC 1 cut(s) 686
BsuRI GGCC 5 cut(s) 163, 658, 666, 1081, 1163
BtgI CCRYGG 1 cut(s) 1350
BtrI CACGTC 1 cut(s) 540
BtsCI GGATG 4 cut(s) 115, 336, 636, 1225
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 4 cut(s) 315, 629, 912, 1117
Cac8I GCNNGC 4 cut(s) 476, 652, 656, 762
CaiI CAGNNNCTG 1 cut(s) 362
CfoI GCGC 1 cut(s) 1117
Cfr10I RCCGGY 1 cut(s) 654
Cfr13I GGNCC 5 cut(s) 161, 162, 657, 665, 1161
CseI GACGC 1 cut(s) 756
Csp6I GTAC 1 cut(s) 127
CspCI CAANNNNNGTGG 4 cut(s) 176, 211, 1053, 1088
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 8 cut(s) 12, 134, 252, 407, 816, 836, 915, 1241
DpnI GATC 7 cut(s) 48, 79, 427, 645, 683, 930, 1103
DpnII GATC 7 cut(s) 46, 77, 425, 643, 681, 928, 1101
DraIII CACNNNGTG 1 cut(s) 1123
EaeI YGGCCR 1 cut(s) 1079
Eco130I CCWWGG 1 cut(s) 1350
Eco24I GRGCYC 2 cut(s) 165, 1324
Eco32I GATATC 2 cut(s) 297, 511
Eco57I CTGAAG 1 cut(s) 1282
EcoO109I RGGNCCY 1 cut(s) 161
EcoRI GAATTC 1 cut(s) 1302
EcoRII CCWGG 1 cut(s) 847
EcoRV GATATC 2 cut(s) 297, 511
EcoT14I CCWWGG 1 cut(s) 1350
EcoT38I GRGCYC 2 cut(s) 165, 1324
ErhI CCWWGG 1 cut(s) 1350
Esp3I CGTCTC 1 cut(s) 1080
FaqI GGGAC 1 cut(s) 741
FauI CCCGC 2 cut(s) 716, 1245
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 3 cut(s) 765, 798, 801
FokI GGATG 4 cut(s) 122, 343, 623, 1232
FriOI GRGCYC 2 cut(s) 165, 1324
Fsp4HI GCNGC 3 cut(s) 765, 798, 801
FspBI CTAG 3 cut(s) 158, 647, 1128
GlaI GCGC 1 cut(s) 1116
GluI GCNGC 3 cut(s) 765, 798, 801
HaeIII GGCC 5 cut(s) 163, 658, 666, 1081, 1163
HapII CCGG 3 cut(s) 655, 660, 679
HgaI GACGC 1 cut(s) 756
HhaI GCGC 1 cut(s) 1117
Hin1I GRCGYC 1 cut(s) 767
Hin6I GCGC 1 cut(s) 1115
HinP1I GCGC 1 cut(s) 1115
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 758
HinfI GANTC 9 cut(s) 167, 229, 585, 841, 919, 989, 1061, 1243, 1270
HpaII CCGG 3 cut(s) 655, 660, 679
HphI GGTGA 1 cut(s) 72
Hpy166II GTNNAC 3 cut(s) 181, 287, 1141
Hpy188I TCNGA 5 cut(s) 46, 172, 301, 606, 1301
Hpy188III TCNNGA 8 cut(s) 560, 679, 838, 1028, 1138, 1192, 1267, 1307
Hpy8I GTNNAC 3 cut(s) 181, 287, 1141
HpyAV CCTTC 3 cut(s) 395, 1151, 1273
HpyCH4III ACNGT 1 cut(s) 1121
HpyCH4IV ACGT 3 cut(s) 539, 879, 1358
HpyCH4V TGCA 6 cut(s) 287, 320, 376, 545, 611, 886
HpyF10VI GCNNNNNNNGC 3 cut(s) 757, 892, 1319
HpyF3I CTNAG 8 cut(s) 12, 134, 252, 407, 816, 836, 915, 1241
HpySE526I ACGT 3 cut(s) 539, 879, 1358
Hsp92I GRCGYC 1 cut(s) 767
HspAI GCGC 1 cut(s) 1115
Kpn2I TCCGGA 1 cut(s) 678
KroI GCCGGC 1 cut(s) 654
KroNI GCCGGC 1 cut(s) 656
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 7 cut(s) 46, 77, 425, 643, 681, 928, 1101
LmnI GCTCC 3 cut(s) 101, 222, 367
Lsp1109I GCAGC 2 cut(s) 784, 787
MaeI CTAG 3 cut(s) 158, 647, 1128
MaeII ACGT 3 cut(s) 539, 879, 1358
MaeIII GTNAC 3 cut(s) 197, 1252, 1354
MalI GATC 7 cut(s) 48, 79, 427, 645, 683, 930, 1103
MboI GATC 7 cut(s) 46, 77, 425, 643, 681, 928, 1101
MboII GAAGA 3 cut(s) 314, 1006, 1353
MfeI CAATTG 1 cut(s) 1065
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 5 cut(s) 98, 165, 289, 914, 1324
MluCI AATT 6 cut(s) 70, 594, 868, 1065, 1283, 1302
MlyI GAGTC 3 cut(s) 161, 238, 1252
MmeI TCCRAC 5 cut(s) 378, 399, 549, 1017, 1316
MroI TCCGGA 1 cut(s) 678
MroNI GCCGGC 1 cut(s) 654
MseI TTAA 7 cut(s) 257, 437, 792, 867, 938, 948, 1287
MslI CAYNNNNRTG 3 cut(s) 204, 717, 1372
MspA1I CMGCKG 1 cut(s) 1240
MspI CCGG 3 cut(s) 655, 660, 679
MspR9I CCNGG 2 cut(s) 660, 849
MunI CAATTG 1 cut(s) 1065
MvaI CCWGG 1 cut(s) 849
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 3 cut(s) 757, 892, 1319
NaeI GCCGGC 1 cut(s) 656
NciI CCSGG 1 cut(s) 660
NcoI CCATGG 1 cut(s) 1350
NdeII GATC 7 cut(s) 46, 77, 425, 643, 681, 928, 1101
NgoMIV GCCGGC 1 cut(s) 654
NlaIV GGNNCC 6 cut(s) 163, 224, 369, 630, 667, 1162
NmeAIII GCCGAG 2 cut(s) 1057, 1189
NmuCI GTSAC 2 cut(s) 197, 1252
NspI RCATGY 3 cut(s) 397, 496, 895
OliI CACNNNNGTG 1 cut(s) 204
PciI ACATGT 2 cut(s) 393, 492
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PdiI GCCGGC 1 cut(s) 656
PfeI GAWTC 6 cut(s) 585, 841, 919, 989, 1061, 1270
PflMI CCANNNNNTGG 1 cut(s) 89
PkrI GCNGC 3 cut(s) 766, 799, 802
PleI GAGTC 3 cut(s) 161, 237, 1251
PpsI GAGTC 3 cut(s) 161, 237, 1251
Ppu21I YACGTR 1 cut(s) 880
PscI ACATGT 2 cut(s) 393, 492
Psp6I CCWGG 1 cut(s) 847
PspGI CCWGG 1 cut(s) 847
PspN4I GGNNCC 6 cut(s) 163, 224, 369, 630, 667, 1162
PspOMI GGGCCC 1 cut(s) 161
PspPI GGNCC 5 cut(s) 161, 162, 657, 665, 1161
PstNI CAGNNNCTG 1 cut(s) 362
PsuI RGATCY 1 cut(s) 643
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
RseI CAYNNNNRTG 3 cut(s) 204, 717, 1372
SaqAI TTAA 7 cut(s) 257, 437, 792, 867, 938, 948, 1287
SatI GCNGC 3 cut(s) 765, 798, 801
Sau3AI GATC 7 cut(s) 46, 77, 425, 643, 681, 928, 1101
Sau96I GGNCC 5 cut(s) 161, 162, 657, 665, 1161
SchI GAGTC 3 cut(s) 161, 238, 1252
ScrFI CCNGG 2 cut(s) 660, 849
SduI GDGCHC 5 cut(s) 98, 165, 289, 914, 1324
SmiMI CAYNNNNRTG 3 cut(s) 204, 717, 1372
SmlI CTYRAG 1 cut(s) 1018
SmoI CTYRAG 1 cut(s) 1018
Sse9I AATT 6 cut(s) 70, 594, 868, 1065, 1283, 1302
SsiI CCGC 5 cut(s) 723, 764, 863, 1238, 1365
SspMI CTAG 3 cut(s) 158, 647, 1128
StyD4I CCNGG 2 cut(s) 658, 847
StyI CCWWGG 1 cut(s) 1350
TaaI ACNGT 1 cut(s) 1121
TaiI ACGT 3 cut(s) 542, 882, 1361
TasI AATT 6 cut(s) 70, 594, 868, 1065, 1283, 1302
TatI WGTACW 1 cut(s) 126
TauI GCSGC 1 cut(s) 767
TfiI GAWTC 6 cut(s) 585, 841, 919, 989, 1061, 1270
Tru1I TTAA 7 cut(s) 257, 437, 792, 867, 938, 948, 1287
Tru9I TTAA 7 cut(s) 257, 437, 792, 867, 938, 948, 1287
TscAI CASTG 4 cut(s) 322, 629, 919, 1124
TseFI GTSAC 2 cut(s) 197, 1252
TseI GCWGC 2 cut(s) 797, 800
Tsp45I GTSAC 2 cut(s) 197, 1252
TspDTI ATGAA 5 cut(s) 17, 141, 722, 818, 1197
TspGWI ACGGA 2 cut(s) 88, 1271
TspRI CASTG 4 cut(s) 322, 629, 919, 1124
Van91I CCANNNNNTGG 1 cut(s) 89
VneI GTGCAC 1 cut(s) 285
XapI RAATTY 2 cut(s) 1283, 1302
XceI RCATGY 3 cut(s) 397, 496, 895
XspI CTAG 3 cut(s) 158, 647, 1128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.