AT4G17370

Oxidoreductase family, C-terminal alpha/beta domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014074
Physical Location & Seq
Forward (+)
9705845 .. 9708342
2498 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17370.1

Sequence Viewer

Length: 1107 bp
ATGGCGGATGTTAAGGACTCAGTGATTACCAAGTACGGAATCGTAGGGATTGGTATGATGGGAAGAGAACATCTCATCAATCTTCACCATCTCCGTGACCAAGGCCTCGCCGTCGTTTGCATCGCCGATCCTCACCCTCCTTCACAGCTCCTGGCCATTGAACTCGCTCAATCTTTTGGATGGGAGCTTAAGGTTTTCTCAGGACACGAGGAGTTGCTCAAGAGTGAGCTGTGTGACGTTATTGTTGTCTCTTCTCCAAATATGACTCATCATCAGATTCTTATGGACATTATCAATTATTCAAAACCGCATCATGTTCTTGTTGAGAAGCCTTTATGCACCACAGTTGCAGATTGCAAACAGGTTTTGGAGGCTGCAAAGAAAAGGTCAGATATGGTGGTGCAAGTTGGGTTGGAGTACAGATACATGCCGCCAGTTGCTAAGCTAATAGAACAAGTAAAAGGCAGAGACTTTGGTAATGTCAAGATGGTAGCAATCCGAGAACATAGATTCCCTTTCTTGGTTAAGGTGAACAACTGGAATAGATTCAATGTGAACACTGGAGGGACCTTAGTGGAGAAATGCTGCCACTTCTTTGATCTAATGAGGCTCTTTGCCGGTGCAAATCCTGTCTGTGTGATGGCTTCTGGAGGCATGGATGTGAACCACAAGGATGAAGTTTATGGTGGAAAGGTGCCTGATATAATTGATAACGCATATGTTATTATTGAGTTTGACAATGGATGTCGTGGGATGCTCGATCTTTGCATGTTTGCTGAAGGAAGCAAAAACGAGCAAGAAATTTCTGTTACTGGTGACATTGGAAAGGGGGAGGCACTTGTTCCAGAGGGTATAGTTCGATCTGGCAGTCGTATTGGAGGAAGAGAACACGTTCAAACAATAAAAGCAGAAGATGAAAGAATAAAATATGAAGGGTTGCATCACGGGTCAAGTTACTTGGAACACCTCACCTTCTTATCAGCAATCAGAGGTGAAGGAATAGCAGCTGTTGATTTGGAAGACGGATTGATGGCTGTTGCCATGGGAGTTGCTGCACAGCTCTCCATTCAGGAGCGCCGCTATGTAACCATTGACGAGGTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GFO_IDH_MocA GFO_IDH_MocA_C

Protein Analysis

368

Amino Acids

40.73

Weight (kDa)

5.73

Isoelectric Point (pI)

31.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GFO_IDH_MocA PF01408 11 - 137 6.8e-29 Oxidoreductase family, NAD-binding Rossmann fold
GFO_IDH_MocA_C3 PF22725 148 - 275 3.4e-12 GFO/IDH/MocA C-terminal domain
GFO_IDH_MocA_C PF02894 151 - 364 6.4e-48 Oxidoreductase family, C-terminal alpha/beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17370
fragaria_vesca FvH4_5g19170 FvH4_5g19170
malus_domestica MD04G1062400.v1.1
prunus_persica Prupe.5G066000_v2.0.a1 Prupe.5G066000_v2.0.a1 Prupe.5G066000_v2.0.a1
pyrus_communis pycom04g05590
rosa_chinensis RchiOBHm_Chr7g0203711
rosa_laevigata RLG00000003511
rosa_multiflora Rmu_sc0001714.1_g000005 Rmu_sc0005354.1_g000002
rosa_roxburghii Rroxscaffold_3G00253600
rosa_rugosa Rorug07G0078100.1
rosa_samantha Rh7BG207000 Rh7DG214900
rosa_wichuraiana Rw7G018120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 694
AciI CCGC 4 cut(s) 5, 308, 431, 1078
AclWI GGATC 1 cut(s) 122
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 1 cut(s) 801
AcuI CTGAAG 1 cut(s) 798
AfaI GTAC 2 cut(s) 35, 419
AfiI CCNNNNNNNGG 1 cut(s) 520
AflII CTTAAG 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 889
AgsI TTSAA 4 cut(s) 161, 303, 550, 896
AjnI CCWGG 1 cut(s) 150
AloI GAACNNNNNNTCC 2 cut(s) 495, 527
AluBI AGCT 6 cut(s) 148, 187, 229, 445, 1007, 1060
AluI AGCT 6 cut(s) 148, 187, 229, 445, 1007, 1060
Alw26I GTCTC 2 cut(s) 253, 462
AlwI GGATC 1 cut(s) 122
AlwNI CAGNNNCTG 1 cut(s) 151
AoxI GGCC 2 cut(s) 103, 153
ApeKI GCWGC 4 cut(s) 374, 585, 1004, 1052
ApoI RAATTY 1 cut(s) 801
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
Asp700I GAANNNNTTC 2 cut(s) 545, 891
AspLEI GCGC 1 cut(s) 1077
AspS9I GGNCC 1 cut(s) 567
AsuHPI GGTGA 6 cut(s) 77, 125, 541, 827, 961, 1004
AvaII GGWCC 1 cut(s) 567
BalI TGGCCA 1 cut(s) 155
BanI GGYRCC 1 cut(s) 694
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 1026
BbvI GCAGC 4 cut(s) 361, 572, 1016, 1039
BccI CCATC 6 cut(s) 52, 96, 174, 481, 634, 1024
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 253, 462
BfoI RGCGCY 1 cut(s) 1078
BfrI CTTAAG 1 cut(s) 188
BisI GCNGC 6 cut(s) 375, 431, 586, 1005, 1053, 1078
BlpI GCTNAGC 1 cut(s) 441
BlsI GCNGC 6 cut(s) 376, 432, 587, 1006, 1054, 1079
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 567
BmgT120I GGNCC 1 cut(s) 567
BmiI GGNNCC 2 cut(s) 568, 696
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 4 cut(s) 129, 319, 744, 949
BpiI GAAGAC 1 cut(s) 1026
BplI GAGNNNNNCTC 2 cut(s) 57, 89
BpmI CTGGAG 2 cut(s) 582, 669
Bpu1102I GCTNAGC 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 100, 1041
Bsc4I CCNNNNNNNGG 1 cut(s) 520
Bse118I RCCGGY 1 cut(s) 617
Bse1I ACTGG 4 cut(s) 434, 542, 565, 817
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 100, 1041
BseGI GGATG 6 cut(s) 13, 185, 664, 679, 749, 759
BseLI CCNNNNNNNGG 1 cut(s) 520
BseMII CTCAG 2 cut(s) 33, 213
BseNI ACTGG 4 cut(s) 434, 542, 565, 817
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 4 cut(s) 361, 572, 1016, 1039
BsgI GTGCAG 1 cut(s) 1038
BshFI GGCC 2 cut(s) 105, 155
BshNI GGYRCC 1 cut(s) 694
BsiSI CCGG 1 cut(s) 618
BslFI GGGAC 1 cut(s) 580
BslI CCNNNNNNNGG 1 cut(s) 520
BsmAI GTCTC 2 cut(s) 253, 462
BsmFI GGGAC 1 cut(s) 580
BsnI GGCC 2 cut(s) 105, 155
Bsp143I GATC 4 cut(s) 127, 598, 760, 860
Bsp1720I GCTNAGC 1 cut(s) 441
Bsp19I CCATGG 1 cut(s) 1041
BspACI CCGC 4 cut(s) 5, 308, 431, 1078
BspANI GGCC 2 cut(s) 105, 155
BspCNI CTCAG 2 cut(s) 32, 212
BspLI GGNNCC 2 cut(s) 568, 696
BspPI GGATC 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 694
BspTI CTTAAG 1 cut(s) 188
BsrFI RCCGGY 1 cut(s) 617
BsrI ACTGG 4 cut(s) 434, 542, 565, 817
BssAI RCCGGY 1 cut(s) 617
BssECI CCNNGG 2 cut(s) 100, 1041
BssMI GATC 4 cut(s) 127, 598, 760, 860
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 2 cut(s) 100, 1041
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 346
Bst6I CTCTTC 3 cut(s) 58, 256, 877
BstAFI CTTAAG 1 cut(s) 188
BstDEI CTNAG 4 cut(s) 19, 199, 441, 571
BstDSI CCRYGG 1 cut(s) 1041
BstF5I GGATG 6 cut(s) 13, 185, 664, 679, 749, 759
BstH2I RGCGCY 1 cut(s) 1078
BstHHI GCGC 1 cut(s) 1077
BstKTI GATC 4 cut(s) 130, 601, 763, 863
BstMAI GTCTC 2 cut(s) 253, 462
BstMBI GATC 4 cut(s) 127, 598, 760, 860
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 2 cut(s) 430, 772
BstSCI CCNGG 1 cut(s) 150
BstV1I GCAGC 4 cut(s) 361, 572, 1016, 1039
BstV2I GAAGAC 1 cut(s) 1026
BsuRI GGCC 2 cut(s) 105, 155
BtgI CCRYGG 1 cut(s) 1041
BtgZI GCGATG 1 cut(s) 106
BtsCI GGATG 6 cut(s) 13, 185, 664, 679, 749, 759
BtsIMutI CAGTG 2 cut(s) 27, 558
CaiI CAGNNNCTG 1 cut(s) 151
CfoI GCGC 1 cut(s) 1077
Cfr10I RCCGGY 1 cut(s) 617
Cfr13I GGNCC 1 cut(s) 567
Csp6I GTAC 2 cut(s) 34, 418
CviAII CATG 5 cut(s) 314, 427, 655, 769, 1042
CviQI GTAC 2 cut(s) 34, 418
DdeI CTNAG 4 cut(s) 19, 199, 441, 571
DpnI GATC 4 cut(s) 129, 600, 762, 862
DpnII GATC 4 cut(s) 127, 598, 760, 860
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 3 cut(s) 58, 256, 877
EarI CTCTTC 3 cut(s) 58, 256, 877
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 100, 1041
Eco147I AGGCCT 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 567
Eco57I CTGAAG 1 cut(s) 798
EcoO109I RGGNCCY 1 cut(s) 567
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 2 cut(s) 100, 1041
ErhI CCWWGG 2 cut(s) 100, 1041
FaeI CATG 5 cut(s) 317, 430, 658, 772, 1045
FaqI GGGAC 1 cut(s) 580
FatI CATG 5 cut(s) 313, 426, 654, 768, 1041
FauNDI CATATG 1 cut(s) 718
Fnu4HI GCNGC 6 cut(s) 375, 431, 586, 1005, 1053, 1078
FokI GGATG 6 cut(s) 20, 192, 671, 686, 756, 766
Fsp4HI GCNGC 6 cut(s) 375, 431, 586, 1005, 1053, 1078
GlaI GCGC 1 cut(s) 1076
GluI GCNGC 6 cut(s) 375, 431, 586, 1005, 1053, 1078
GsuI CTGGAG 2 cut(s) 582, 669
HaeII RGCGCY 1 cut(s) 1078
HaeIII GGCC 2 cut(s) 105, 155
HapII CCGG 1 cut(s) 618
HhaI GCGC 1 cut(s) 1077
Hin1II CATG 5 cut(s) 317, 430, 658, 772, 1045
Hin6I GCGC 1 cut(s) 1075
HinP1I GCGC 1 cut(s) 1075
HinfI GANTC 6 cut(s) 17, 39, 265, 277, 510, 546
HpaII CCGG 1 cut(s) 618
HphI GGTGA 6 cut(s) 77, 125, 541, 827, 961, 1004
Hpy166II GTNNAC 3 cut(s) 532, 556, 664
Hpy188I TCNGA 4 cut(s) 276, 391, 500, 989
Hpy188III TCNNGA 6 cut(s) 201, 220, 484, 648, 845, 1070
Hpy8I GTNNAC 3 cut(s) 532, 556, 664
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 5 cut(s) 150, 773, 926, 982, 989
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 2 cut(s) 237, 891
HpyF3I CTNAG 4 cut(s) 19, 199, 441, 571
HpySE526I ACGT 2 cut(s) 237, 891
Hsp92II CATG 5 cut(s) 317, 430, 658, 772, 1045
HspAI GCGC 1 cut(s) 1075
Kzo9I GATC 4 cut(s) 127, 598, 760, 860
LmnI GCTCC 3 cut(s) 153, 184, 1072
Lsp1109I GCAGC 4 cut(s) 361, 572, 1016, 1039
LweI GCATC 4 cut(s) 129, 319, 744, 949
MaeII ACGT 2 cut(s) 237, 891
MaeIII GTNAC 6 cut(s) 95, 233, 808, 815, 953, 1084
MalI GATC 4 cut(s) 129, 600, 762, 862
MboI GATC 4 cut(s) 127, 598, 760, 860
MboII GAAGA 6 cut(s) 74, 75, 243, 894, 923, 1031
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 3 cut(s) 295, 705, 801
MluNI TGGCCA 1 cut(s) 155
MlyI GAGTC 2 cut(s) 11, 259
MmeI TCCRAC 1 cut(s) 393
Mox20I TGGCCA 1 cut(s) 155
MroXI GAANNNNTTC 2 cut(s) 545, 891
MscI TGGCCA 1 cut(s) 155
MseI TTAA 3 cut(s) 12, 189, 525
MslI CAYNNNNRTG 3 cut(s) 93, 659, 672
Msp20I TGGCCA 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 1007
MspCI CTTAAG 1 cut(s) 188
MspI CCGG 1 cut(s) 618
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
NcoI CCATGG 1 cut(s) 1041
NdeI CATATG 1 cut(s) 718
NdeII GATC 4 cut(s) 127, 598, 760, 860
NlaIII CATG 5 cut(s) 317, 430, 658, 772, 1045
NlaIV GGNNCC 2 cut(s) 568, 696
NmuCI GTSAC 3 cut(s) 95, 233, 815
NspI RCATGY 2 cut(s) 430, 772
PceI AGGCCT 1 cut(s) 105
PdmI GAANNNNTTC 2 cut(s) 545, 891
PfeI GAWTC 4 cut(s) 39, 277, 510, 546
PflFI GACNNNGTC 1 cut(s) 1097
PkrI GCNGC 6 cut(s) 376, 432, 587, 1006, 1054, 1079
PleI GAGTC 2 cut(s) 11, 259
PpsI GAGTC 2 cut(s) 11, 259
PpuMI RGGWCCY 1 cut(s) 567
Psp5II RGGWCCY 1 cut(s) 567
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 568, 696
PspPI GGNCC 1 cut(s) 567
PspPPI RGGWCCY 1 cut(s) 567
PstNI CAGNNNCTG 1 cut(s) 151
PsyI GACNNNGTC 1 cut(s) 1097
PvuII CAGCTG 1 cut(s) 1007
RsaI GTAC 2 cut(s) 35, 419
RsaNI GTAC 2 cut(s) 34, 418
RseI CAYNNNNRTG 3 cut(s) 93, 659, 672
SaqAI TTAA 3 cut(s) 12, 189, 525
SatI GCNGC 6 cut(s) 375, 431, 586, 1005, 1053, 1078
Sau3AI GATC 4 cut(s) 127, 598, 760, 860
Sau96I GGNCC 1 cut(s) 567
SchI GAGTC 2 cut(s) 11, 259
ScrFI CCNGG 1 cut(s) 152
SfaNI GCATC 4 cut(s) 129, 319, 744, 949
SinI GGWCC 1 cut(s) 567
SmiMI CAYNNNNRTG 3 cut(s) 93, 659, 672
SmlI CTYRAG 2 cut(s) 188, 218
SmoI CTYRAG 2 cut(s) 188, 218
Sse9I AATT 3 cut(s) 295, 705, 801
SseBI AGGCCT 1 cut(s) 105
SsiI CCGC 4 cut(s) 5, 308, 431, 1078
StuI AGGCCT 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 2 cut(s) 100, 1041
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 2 cut(s) 240, 894
TaqI TCGA 2 cut(s) 759, 859
TasI AATT 3 cut(s) 295, 705, 801
TatI WGTACW 1 cut(s) 417
TauI GCSGC 2 cut(s) 433, 1080
TfiI GAWTC 4 cut(s) 39, 277, 510, 546
Tru1I TTAA 3 cut(s) 12, 189, 525
Tru9I TTAA 3 cut(s) 12, 189, 525
TscAI CASTG 2 cut(s) 27, 565
TseFI GTSAC 3 cut(s) 95, 233, 815
TseI GCWGC 4 cut(s) 374, 585, 1004, 1052
Tsp45I GTSAC 3 cut(s) 95, 233, 815
TspDTI ATGAA 3 cut(s) 690, 930, 945
TspGWI ACGGA 3 cut(s) 51, 83, 1038
TspRI CASTG 2 cut(s) 27, 565
Tth111I GACNNNGTC 1 cut(s) 1097
Vha464I CTTAAG 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 567
XapI RAATTY 1 cut(s) 801
XceI RCATGY 2 cut(s) 430, 772
XmnI GAANNNNTTC 2 cut(s) 545, 891
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.