FvH4_5g19170

Oxidoreductase family, C-terminal alpha/beta domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
11053910 .. 11057797
3888 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19170.t3

Sequence Viewer

Length: 795 bp
ATGGCAGCTGCTGCTGCTGCTGCTTGTGGTACAGTCAAGTATGGGATTGTAGGTGTGGGTATGATGGGTCGAGAGCACCTCATCAATCTATACCATCTTCGCTCTGAAGGTGTGGCCGTGGTAGCCATAGCTGACCCTCATGTTCCTTCCCAAAAGCTGGCCTTGGACTTGGCTCACTCTTACAATTGGCCTATAAAGGTTTTTGCAGGGCATAAGGAGCTATTGGATAGTCTTCTCTGTGATGTGGTGGTTGTGTCAACTCCAAATATGACCCATCATCATATTCTAATGGATATAATTAACCACCCCAAACCCCACCATGTACTGGTGGAGAAGCCGTTGTGTACCACCGTAGCTCACTGCAAAGAGGTTATTAAAGCCGCTACAAAGAGGCAGGATATTTTGGTACAAGTTGGACTGGAGTATAGATACATGCCACCTGTTGCTAAACTGATAAACTTAGTGAAGGGTGGAAGTCTTGGGCAGGTCAAAATGGTGGCAATCCGAGAACACAGGTTTCCTTTCTTAATTAAGGTCAACAATTGGAATCGGTTTAATGTAAACTCTGGGGGAACACTGGTAGAGAAGTGCTGCCACTTCTTTGATTTAATGAGGCTGTTTGCTGGAGCTAATCCTCTTCGTGTGATGGCTTCTGGAGCCATTGATGTTAACCACAAAGATGAAATATATGATGGAAAGGGAGTAAAAATGAGCAAGAGATATCTGTTGTTGGTGACATCGGAAAGGGAGAAGCCTTTGTTCCTGAGAGTATTGTACGTTATGGTACTCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

265

Amino Acids

29.41

Weight (kDa)

9.26

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GFO_IDH_MocA PF01408 13 - 139 7e-26 Oxidoreductase family, NAD-binding Rossmann fold
GFO_IDH_MocA_C3 PF22725 149 - 279 3.8e-15 GFO/IDH/MocA C-terminal domain
GFO_IDH_MocA_C PF02894 154 - 280 1.2e-26 Oxidoreductase family, C-terminal alpha/beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014074)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 475
AccB7I CCANNNNNTGG 2 cut(s) 157, 325
AciI CCGC 1 cut(s) 381
AcoI YGGCCR 1 cut(s) 114
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 6 cut(s) 31, 324, 346, 408, 776, 786
AfiI CCNNNNNNNGG 2 cut(s) 157, 325
AluBI AGCT 6 cut(s) 8, 131, 157, 220, 356, 629
AluI AGCT 6 cut(s) 8, 131, 157, 220, 356, 629
Alw21I GWGCWC 1 cut(s) 78
AlwNI CAGNNNCTG 1 cut(s) 11
Ama87I CYCGRG 1 cut(s) 788
AoxI GGCC 3 cut(s) 114, 159, 188
ApeKI GCWGC 7 cut(s) 5, 8, 11, 14, 17, 20, 591
AsuHPI GGTGA 1 cut(s) 745
AvaI CYCGRG 1 cut(s) 788
BaeI ACNNNNGTAYC 1 cut(s) 776
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 4 cut(s) 4, 7, 17, 578
BccI CCATC 5 cut(s) 58, 102, 282, 640, 686
BceAI ACGGC 2 cut(s) 101, 322
BfuAI ACCTGC 1 cut(s) 475
BisI GCNGC 8 cut(s) 6, 9, 12, 15, 18, 21, 381, 592
BlsI GCNGC 8 cut(s) 7, 10, 13, 16, 19, 22, 382, 593
BmeT110I CYCGRG 1 cut(s) 788
BmiI GGNNCC 1 cut(s) 658
BpiI GAAGAC 1 cut(s) 224
BplI GAGNNNNNCTC 2 cut(s) 63, 95
BpmI CTGGAG 3 cut(s) 440, 645, 675
BsaJI CCNNGG 2 cut(s) 117, 162
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 325
Bse1I ACTGG 3 cut(s) 330, 423, 582
BseDI CCNNGG 2 cut(s) 117, 162
BseLI CCNNNNNNNGG 2 cut(s) 157, 325
BseMII CTCAG 1 cut(s) 755
BseNI ACTGG 3 cut(s) 330, 423, 582
BseXI GCAGC 4 cut(s) 4, 7, 17, 578
BshFI GGCC 3 cut(s) 116, 161, 190
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 788
BslI CCNNNNNNNGG 2 cut(s) 157, 325
BsnI GGCC 3 cut(s) 116, 161, 190
BsoBI CYCGRG 1 cut(s) 788
Bsp1286I GDGCHC 1 cut(s) 78
BspACI CCGC 1 cut(s) 381
BspANI GGCC 3 cut(s) 116, 161, 190
BspCNI CTCAG 1 cut(s) 756
BspLI GGNNCC 1 cut(s) 658
BspMI ACCTGC 1 cut(s) 475
BsrI ACTGG 3 cut(s) 330, 423, 582
BssECI CCNNGG 2 cut(s) 117, 162
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 2 cut(s) 34, 352
Bst6I CTCTTC 1 cut(s) 642
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 2 cut(s) 460, 764
BstDSI CCRYGG 1 cut(s) 117
BstMWI GCNNNNNNNGC 7 cut(s) 11, 14, 17, 20, 122, 217, 656
BstNSI RCATGY 1 cut(s) 436
BstV1I GCAGC 4 cut(s) 4, 7, 17, 578
BstV2I GAAGAC 1 cut(s) 224
BsuRI GGCC 3 cut(s) 116, 161, 190
BtgI CCRYGG 1 cut(s) 117
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 2 cut(s) 358, 575
BveI ACCTGC 1 cut(s) 475
Cac8I GCNNGC 1 cut(s) 159
CaiI CAGNNNCTG 1 cut(s) 11
Csp6I GTAC 6 cut(s) 30, 323, 345, 407, 775, 785
CviAII CATG 3 cut(s) 140, 320, 433
CviQI GTAC 6 cut(s) 30, 323, 345, 407, 775, 785
DdeI CTNAG 2 cut(s) 460, 764
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
Eco130I CCWWGG 1 cut(s) 162
Eco32I GATATC 1 cut(s) 722
Eco57I CTGAAG 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 788
EcoRV GATATC 1 cut(s) 722
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 3 cut(s) 143, 323, 436
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FatI CATG 3 cut(s) 139, 319, 432
Fnu4HI GCNGC 8 cut(s) 6, 9, 12, 15, 18, 21, 381, 592
Fsp4HI GCNGC 8 cut(s) 6, 9, 12, 15, 18, 21, 381, 592
GluI GCNGC 8 cut(s) 6, 9, 12, 15, 18, 21, 381, 592
GsuI CTGGAG 3 cut(s) 440, 645, 675
HaeIII GGCC 3 cut(s) 116, 161, 190
Hin1II CATG 3 cut(s) 143, 323, 436
HincII GTYRAC 3 cut(s) 258, 538, 670
HindII GTYRAC 3 cut(s) 258, 538, 670
HinfI GANTC 1 cut(s) 547
HpaI GTTAAC 1 cut(s) 670
HphI GGTGA 1 cut(s) 745
Hpy166II GTNNAC 5 cut(s) 258, 345, 538, 562, 670
Hpy188I TCNGA 3 cut(s) 106, 506, 742
Hpy188III TCNNGA 3 cut(s) 71, 654, 763
Hpy8I GTNNAC 5 cut(s) 258, 345, 538, 562, 670
HpyAV CCTTC 3 cut(s) 101, 156, 460
HpyCH4III ACNGT 2 cut(s) 34, 352
HpyCH4IV ACGT 1 cut(s) 777
HpyCH4V TGCA 2 cut(s) 206, 363
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 14, 17, 20, 122, 217, 656
HpyF3I CTNAG 2 cut(s) 460, 764
HpySE526I ACGT 1 cut(s) 777
Hsp92II CATG 3 cut(s) 143, 323, 436
KspAI GTTAAC 1 cut(s) 670
LmnI GCTCC 3 cut(s) 217, 626, 656
Lsp1109I GCAGC 4 cut(s) 4, 7, 17, 578
MaeII ACGT 1 cut(s) 777
MaeIII GTNAC 1 cut(s) 733
MboII GAAGA 3 cut(s) 89, 224, 629
MfeI CAATTG 2 cut(s) 184, 541
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 4 cut(s) 184, 297, 528, 541
MmeI TCCRAC 1 cut(s) 394
MnlI CCTC 6 cut(s) 89, 147, 361, 384, 606, 645
MseI TTAA 7 cut(s) 300, 375, 527, 531, 555, 608, 669
MslI CAYNNNNRTG 1 cut(s) 678
MspA1I CMGCKG 1 cut(s) 8
MunI CAATTG 2 cut(s) 184, 541
MwoI GCNNNNNNNGC 7 cut(s) 11, 14, 17, 20, 122, 217, 656
NlaIII CATG 3 cut(s) 143, 323, 436
NlaIV GGNNCC 1 cut(s) 658
NmuCI GTSAC 1 cut(s) 733
NspI RCATGY 1 cut(s) 436
PacI TTAATTAA 1 cut(s) 531
PaeR7I CTCGAG 1 cut(s) 788
PfeI GAWTC 1 cut(s) 547
PflMI CCANNNNNTGG 2 cut(s) 157, 325
PkrI GCNGC 8 cut(s) 7, 10, 13, 16, 19, 22, 382, 593
PspN4I GGNNCC 1 cut(s) 658
PspXI VCTCGAGB 1 cut(s) 788
PstNI CAGNNNCTG 1 cut(s) 11
PvuII CAGCTG 1 cut(s) 8
RsaI GTAC 6 cut(s) 31, 324, 346, 408, 776, 786
RsaNI GTAC 6 cut(s) 30, 323, 345, 407, 775, 785
RseI CAYNNNNRTG 1 cut(s) 678
SaqAI TTAA 7 cut(s) 300, 375, 527, 531, 555, 608, 669
SatI GCNGC 8 cut(s) 6, 9, 12, 15, 18, 21, 381, 592
SduI GDGCHC 1 cut(s) 78
Sfr274I CTCGAG 1 cut(s) 788
SlaI CTCGAG 1 cut(s) 788
SmiMI CAYNNNNRTG 1 cut(s) 678
SmlI CTYRAG 1 cut(s) 788
SmoI CTYRAG 1 cut(s) 788
Sse9I AATT 4 cut(s) 184, 297, 528, 541
SsiI CCGC 1 cut(s) 381
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 34, 352
TaiI ACGT 1 cut(s) 780
TaqI TCGA 2 cut(s) 70, 789
TasI AATT 4 cut(s) 184, 297, 528, 541
TatI WGTACW 1 cut(s) 322
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 1 cut(s) 547
Tru1I TTAA 7 cut(s) 300, 375, 527, 531, 555, 608, 669
Tru9I TTAA 7 cut(s) 300, 375, 527, 531, 555, 608, 669
TscAI CASTG 2 cut(s) 365, 582
TseFI GTSAC 1 cut(s) 733
TseI GCWGC 7 cut(s) 5, 8, 11, 14, 17, 20, 591
Tsp45I GTSAC 1 cut(s) 733
TspDTI ATGAA 1 cut(s) 696
TspRI CASTG 2 cut(s) 365, 582
Van91I CCANNNNNTGG 2 cut(s) 157, 325
XceI RCATGY 1 cut(s) 436
XhoI CTCGAG 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.