Rh7DG214900

Oxidoreductase family, C-terminal alpha/beta domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014074
Physical Location & Seq
Forward (+)
20718439 .. 20721799
3361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG214900.1

Sequence Viewer

Length: 972 bp
ATGGTGTTAAATGCCGACCAAAGTAACCTCAATAAAATCCAAACTACCACAGTAGAGAGAGACAGAGTAGAGGAAAAGAAAAAATTGTCAGCTATGGCTGTTGCTTCAAACGTAGTCAAGTATGGGATTGTAGGGGTGGGTATGATGGGTCGAGAGCACCTCATCAATTTGCACCATCTTCGCTCGGAAGGCGTGGCCGTGGTAGCCATAGCTGACCCCCATGTTCCTTCCCAAAAACTCGCCTTGGACTTGGCTCACTCTTTCAATTGGCCTCTAAAGGTTTTTTCAGGGCATAAGGAGCTGTTGGATAGTCTTCTCTGTGATGTGGTGGTTGTGTCAACTCCAAATATGACCCATCATCGTATTCTAATGGATATAATTAACCACCCCAAACCCCACCATGTACTGGTGGAGAAGCCGTTGTGTACCACAGTTGCTCACTGCAAAGAGGTTATTGAAGCCGCTAGAAAGAGGCAGGATATGTTGGTGCAAGTTGGACTGGAGTATAGATACATGCCGCCGGTTGCTAAACTGATAAACATAGTAAAGGGTGGAAGTCTTGGCCAGGTCAAAATGGTGGCAATCCGAGAACACAGGTTTCCTTTCTTGGTTAAGGTCAACAATTGGAACCGGTTTAATGTTAACTCTGGGGGGACACTGGTAGAGAAGTGCTGTCACTTCTTTGATTTGATGAGGCTGTTTGCTGGAGCTAATCCTTTTCGTGTGATGGCTTCTGGAGCCATTGATGTTAACCACAAAGATGAAATATATGATGGGAAGGTACCAGATATAATTGACAATGCATATGTTATTGTCGAATTTGATAATGGTGCTCGTGGGATGCTTGACCTTTGTATGTTTGCTGAAGGGAGTAAAAATGAGCAAGAAATATCGGTGGTTGGTGATGTCGGAAAGGTAGTTCTCTTTGTCTCCCTCTCCCTCTCTGATTATTCTCTGCATTATAGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GFO_IDH_MocA GFO_IDH_MocA_C

Protein Analysis

323

Amino Acids

36.14

Weight (kDa)

7.73

Isoelectric Point (pI)

31.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GFO_IDH_MocA PF01408 40 - 166 4.9e-27 Oxidoreductase family, NAD-binding Rossmann fold
GFO_IDH_MocA_C3 PF22725 176 - 306 2.4e-15 GFO/IDH/MocA C-terminal domain
GFO_IDH_MocA_C PF02894 182 - 307 6.7e-27 Oxidoreductase family, C-terminal alpha/beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17370
fragaria_vesca FvH4_5g19170 FvH4_5g19170
malus_domestica MD04G1062400.v1.1
prunus_persica Prupe.5G066000_v2.0.a1 Prupe.5G066000_v2.0.a1 Prupe.5G066000_v2.0.a1
pyrus_communis pycom04g05590
rosa_chinensis RchiOBHm_Chr7g0203711
rosa_laevigata RLG00000003511
rosa_multiflora Rmu_sc0001714.1_g000005 Rmu_sc0005354.1_g000002
rosa_roxburghii Rroxscaffold_3G00253600
rosa_rugosa Rorug07G0078100.1
rosa_samantha Rh7BG207000 Rh7DG214900
rosa_wichuraiana Rw7G018120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 781
AccB1I GGYRCC 1 cut(s) 781
AccB7I CCANNNNNTGG 1 cut(s) 406
AciI CCGC 2 cut(s) 462, 518
AcoI YGGCCR 2 cut(s) 195, 562
AcsI RAATTY 1 cut(s) 818
AcuI CTGAAG 1 cut(s) 885
AfaI GTAC 3 cut(s) 405, 427, 783
AfiI CCNNNNNNNGG 1 cut(s) 406
AgeI ACCGGT 1 cut(s) 630
AgsI TTSAA 3 cut(s) 108, 265, 458
AjnI CCWGG 1 cut(s) 564
AloI GAACNNNNNNTCC 2 cut(s) 903, 935
AluBI AGCT 4 cut(s) 92, 212, 301, 710
AluI AGCT 4 cut(s) 92, 212, 301, 710
Alw21I GWGCWC 2 cut(s) 159, 835
Alw26I GTCTC 2 cut(s) 54, 934
AoxI GGCC 3 cut(s) 195, 269, 562
ApoI RAATTY 1 cut(s) 818
AsiGI ACCGGT 1 cut(s) 630
Asp718I GGTACC 1 cut(s) 781
AsuHPI GGTGA 1 cut(s) 914
BalI TGGCCA 1 cut(s) 564
BanI GGYRCC 1 cut(s) 781
BauI CACGAG 1 cut(s) 834
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 2 cut(s) 159, 835
BccI CCATC 5 cut(s) 139, 183, 363, 721, 767
BceAI ACGGC 2 cut(s) 182, 403
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 1 cut(s) 566
BcoDI GTCTC 2 cut(s) 54, 934
BfaI CTAG 1 cut(s) 465
BisI GCNGC 2 cut(s) 462, 518
BlsI GCNGC 2 cut(s) 463, 519
Bme1390I CCNGG 1 cut(s) 566
BmiI GGNNCC 3 cut(s) 629, 739, 783
BmrFI CCNGG 1 cut(s) 566
BmsI GCATC 1 cut(s) 831
BpiI GAAGAC 1 cut(s) 305
BplI GAGNNNNNCTC 2 cut(s) 144, 176
BpmI CTGGAG 3 cut(s) 521, 726, 756
BsaJI CCNNGG 2 cut(s) 198, 243
BsaWI WCCGGW 1 cut(s) 630
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 1 cut(s) 406
Bse118I RCCGGY 2 cut(s) 520, 630
Bse1I ACTGG 3 cut(s) 411, 504, 663
BseBI CCWGG 1 cut(s) 566
BseDI CCNNGG 2 cut(s) 198, 243
BseGI GGATG 1 cut(s) 846
BseLI CCNNNNNNNGG 1 cut(s) 406
BseNI ACTGG 3 cut(s) 411, 504, 663
BshFI GGCC 3 cut(s) 197, 271, 564
BshNI GGYRCC 1 cut(s) 781
BshTI ACCGGT 1 cut(s) 630
BsiHKAI GWGCWC 2 cut(s) 159, 835
BsiSI CCGG 2 cut(s) 521, 631
BslFI GGGAC 1 cut(s) 667
BslI CCNNNNNNNGG 1 cut(s) 406
BsmAI GTCTC 2 cut(s) 54, 934
BsmFI GGGAC 1 cut(s) 667
BsnI GGCC 3 cut(s) 197, 271, 564
Bsp1286I GDGCHC 2 cut(s) 159, 835
BspACI CCGC 2 cut(s) 462, 518
BspANI GGCC 3 cut(s) 197, 271, 564
BspLI GGNNCC 3 cut(s) 629, 739, 783
BspT107I GGYRCC 1 cut(s) 781
BsrFI RCCGGY 2 cut(s) 520, 630
BsrI ACTGG 3 cut(s) 411, 504, 663
BssAI RCCGGY 2 cut(s) 520, 630
BssECI CCNNGG 2 cut(s) 198, 243
BssSI CACGAG 1 cut(s) 834
BssT1I CCWWGG 1 cut(s) 243
Bst2BI CACGAG 1 cut(s) 834
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 2 cut(s) 52, 433
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 846
BstMAI GTCTC 2 cut(s) 54, 934
BstMWI GCNNNNNNNGC 4 cut(s) 189, 203, 298, 737
BstNI CCWGG 1 cut(s) 566
BstNSI RCATGY 1 cut(s) 517
BstSCI CCNGG 1 cut(s) 564
BstV2I GAAGAC 1 cut(s) 305
BsuRI GGCC 3 cut(s) 197, 271, 564
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 1 cut(s) 846
BtsI GCAGTG 1 cut(s) 439
BtsIMutI CAGTG 2 cut(s) 439, 656
Cfr10I RCCGGY 2 cut(s) 520, 630
Csp6I GTAC 3 cut(s) 404, 426, 782
CspAI ACCGGT 1 cut(s) 630
CviAII CATG 3 cut(s) 221, 401, 514
CviQI GTAC 3 cut(s) 404, 426, 782
EaeI YGGCCR 2 cut(s) 195, 562
Eco130I CCWWGG 1 cut(s) 243
Eco57I CTGAAG 1 cut(s) 885
EcoRII CCWGG 1 cut(s) 564
EcoT14I CCWWGG 1 cut(s) 243
EcoT22I ATGCAT 1 cut(s) 805
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 3 cut(s) 224, 404, 517
FaqI GGGAC 1 cut(s) 667
FatI CATG 3 cut(s) 220, 400, 513
FauNDI CATATG 1 cut(s) 805
Fnu4HI GCNGC 2 cut(s) 462, 518
FokI GGATG 1 cut(s) 853
Fsp4HI GCNGC 2 cut(s) 462, 518
FspBI CTAG 1 cut(s) 465
GluI GCNGC 2 cut(s) 462, 518
GsuI CTGGAG 3 cut(s) 521, 726, 756
HaeIII GGCC 3 cut(s) 197, 271, 564
HapII CCGG 2 cut(s) 521, 631
Hin1II CATG 3 cut(s) 224, 404, 517
HincII GTYRAC 4 cut(s) 339, 619, 643, 751
HindII GTYRAC 4 cut(s) 339, 619, 643, 751
HpaI GTTAAC 2 cut(s) 643, 751
HpaII CCGG 2 cut(s) 521, 631
HphI GGTGA 1 cut(s) 914
Hpy166II GTNNAC 5 cut(s) 339, 426, 619, 643, 751
Hpy188I TCNGA 4 cut(s) 187, 587, 911, 946
Hpy188III TCNNGA 2 cut(s) 152, 735
Hpy8I GTNNAC 5 cut(s) 339, 426, 619, 643, 751
HpyAV CCTTC 4 cut(s) 182, 237, 772, 860
HpyCH4III ACNGT 2 cut(s) 52, 433
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 5 cut(s) 172, 444, 490, 803, 958
HpyF10VI GCNNNNNNNGC 4 cut(s) 189, 203, 298, 737
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 3 cut(s) 224, 404, 517
KpnI GGTACC 1 cut(s) 785
KspAI GTTAAC 2 cut(s) 643, 751
LmnI GCTCC 3 cut(s) 298, 707, 737
LweI GCATC 1 cut(s) 831
MaeI CTAG 1 cut(s) 465
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 23, 674
MboII GAAGA 2 cut(s) 170, 305
MfeI CAATTG 2 cut(s) 265, 622
MhlI GDGCHC 2 cut(s) 159, 835
MlsI TGGCCA 1 cut(s) 564
MluCI AATT 7 cut(s) 83, 166, 265, 378, 622, 792, 818
MluNI TGGCCA 1 cut(s) 564
MmeI TCCRAC 3 cut(s) 285, 475, 889
MnlI CCTC 9 cut(s) 38, 64, 170, 282, 442, 465, 687, 944, 950
Mox20I TGGCCA 1 cut(s) 564
Mph1103I ATGCAT 1 cut(s) 805
MscI TGGCCA 1 cut(s) 564
MseI TTAA 6 cut(s) 8, 381, 612, 636, 642, 750
MslI CAYNNNNRTG 1 cut(s) 759
Msp20I TGGCCA 1 cut(s) 564
MspI CCGG 2 cut(s) 521, 631
MspR9I CCNGG 1 cut(s) 566
MunI CAATTG 2 cut(s) 265, 622
MvaI CCWGG 1 cut(s) 566
MwoI GCNNNNNNNGC 4 cut(s) 189, 203, 298, 737
NdeI CATATG 1 cut(s) 805
NlaIII CATG 3 cut(s) 224, 404, 517
NlaIV GGNNCC 3 cut(s) 629, 739, 783
NmuCI GTSAC 1 cut(s) 674
NsiI ATGCAT 1 cut(s) 805
NspI RCATGY 1 cut(s) 517
PflMI CCANNNNNTGG 1 cut(s) 406
PinAI ACCGGT 1 cut(s) 630
PkrI GCNGC 2 cut(s) 463, 519
Psp6I CCWGG 1 cut(s) 564
PspGI CCWGG 1 cut(s) 564
PspN4I GGNNCC 3 cut(s) 629, 739, 783
RsaI GTAC 3 cut(s) 405, 427, 783
RsaNI GTAC 3 cut(s) 404, 426, 782
RseI CAYNNNNRTG 1 cut(s) 759
SaqAI TTAA 6 cut(s) 8, 381, 612, 636, 642, 750
SatI GCNGC 2 cut(s) 462, 518
ScrFI CCNGG 1 cut(s) 566
SduI GDGCHC 2 cut(s) 159, 835
SfaNI GCATC 1 cut(s) 831
SmiMI CAYNNNNRTG 1 cut(s) 759
Sse9I AATT 7 cut(s) 83, 166, 265, 378, 622, 792, 818
SsiI CCGC 2 cut(s) 462, 518
SspMI CTAG 1 cut(s) 465
StyD4I CCNGG 1 cut(s) 564
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 52, 433
TaiI ACGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 151, 816
TasI AATT 7 cut(s) 83, 166, 265, 378, 622, 792, 818
TatI WGTACW 1 cut(s) 403
TauI GCSGC 2 cut(s) 464, 520
Tru1I TTAA 6 cut(s) 8, 381, 612, 636, 642, 750
Tru9I TTAA 6 cut(s) 8, 381, 612, 636, 642, 750
TscAI CASTG 2 cut(s) 446, 663
TseFI GTSAC 1 cut(s) 674
Tsp45I GTSAC 1 cut(s) 674
TspDTI ATGAA 1 cut(s) 777
TspRI CASTG 2 cut(s) 446, 663
Van91I CCANNNNNTGG 1 cut(s) 406
XapI RAATTY 1 cut(s) 818
XceI RCATGY 1 cut(s) 517
XspI CTAG 1 cut(s) 465
Zsp2I ATGCAT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.