AT4G19120

AT4G19120 (E 0.0) ERD3 ERD3 (early-responsive to dehydration 3)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
10460241 .. 10464306
4066 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19120.2

Sequence Viewer

Length: 1803 bp
ATGAAGTATAAAGATGAGAAGTACGAGAAAGCTGAGAAGGGTTCAAGGATTTTGCCCAAGACAGTTTTACTGATTCTTCTTTGTGGACTTTCGTTCTATCTTGGAGGGTTGTATTGTGGGAAGAACATAATTGAAGTTAGTGATGTTGCAAAAGCTGAATCTTCTTCCTTAGATGTTGATGACTCTCTTCAAGTCAAATCTGTTTCTTTCTCGGAATGTAGCAGTGACTACCAAGATTACACTCCTTGCACTGATCCAAGGAAATGGAAGAAGTATGGTACTCACAGGCTTACTTTCATGGAGCGACATTGTCCTCCTGTGTTTGATAGAAAGCAGTGTCTGGTTCCTCCTCCTGATGGCTATAAGCCACCGATAAGATGGCCAAAGAGCAAAGACGAATGTTGGTACAGGAATGTGCCATATGATTGGATTAACAAGCAGAAATCTAACCAGAATTGGCTAAGGAAAGAGGGTGAAAAGTTCATTTTTCCTGGTGGGGGTACAATGTTTCCACATGGAGTCAGTGCCTATGTCGATCTGATGCAAGATTTGATCCCTGAAATGAAAGATGGGACTATACGCACAGCCATTGACACTGGTTGTGGGGTTGCGAGCTGGGGAGGCGATTTGTTGGACCGGGGTATCCTCACGGTATCACTCGCCCCGAGGGATAATCACGAAGCTCAAGTCCAGTTTGCTCTAGAACGTGGAATTCCTGCGATTCTTGGCATCATTTCCACTCAACGTCTCCCTTTCCCTTCAAATTCATTTGATATGGCTCATTGCTCAAGATGCCTTATTCCGTGGACAGAATTTGGTGGAGTATATCTTCTGGAGGTTCACCGTATCCTAAGACCTGGTGGCTTCTGGGTCTTATCTGGTCCACCAGTCAACTATGAGAACCGTTGGAAAGGTTGGGACACAACCATTGAAGAGCAGAGATCAAACTACGAGAAGCTGCAGGAATTGTTATCTTCAATGTGCTTCAAAATGTATGCCAAGAAAGACGATATCGCAGTCTGGCAAAAATCTCCAGACAATCTATGCTATAACAAGTTGTCTAACGACCCTGATGCATACCCGCCAAAATGTGACGACAGCCTTGAGCCAGATTCTGCTTGGTATACACCATTACGCCCTTGCGTTGTGGTTCCAAGCCCTAAGCTAAAGAAGACGGATTTGGAATCTACTCCCAAGTGGCCAGAAAGATTACACACAACTCCTGAAAGAATCTCTGATGTTCCTGGAGGAAATGGTAACGTGTTTAAACATGATGATAGCAAATGGAAAACAAGGGCTAAGCATTACAAGAAGCTGTTACCCGCGATTGGTTCTGACAAAATTCGGAATGTTATGGATATGAACACTGCTTATGGAGGTTTGGCTGCTGCTCTGGTCAATGATCCTTTGTGGGTCATGAATGTCGTCTCTTCTTATGCTGCAAACACACTTCCCGTTGTGTTTGATCGTGGATTGATCGGAACATATCATGACTGGTGTGAAGCTTTTTCGACGTATCCAAGAACTTATGATCTTCTTCACGTAGATGGGCTGTTTACATCTGAAAGCCAGAGGTGTGATATGAAATATGTAATGCTGGAAATGGATAGGATCTTACGTCCTAGCGGGTATGCGATTATACGCGAATCGAGCTACTTCGCAGATTCAATTGCTTCTGTTGCTAAAGAGCTGAGATGGAGTTGCCGTAAAGAACAAACAGAGTCTGCATCAGCCAATGAGAAGCTCTTGATTTGCCAGAAGAAGCTGTGGTATTCATCTAACGCAAGTTCAGAAACAAATTAA

Protein Analysis

600

Amino Acids

68.33

Weight (kDa)

7.44

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_29 PF03141 79 - 587 4.5e-214 Putative S-adenosyl-L-methionine-dependent methyltransferase
Methyltransf_11 PF08241 198 - 291 7.4e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1124
AccII CGCG 2 cut(s) 1325, 1644
AciI CCGC 3 cut(s) 1082, 1323, 1626
AclWI GGATC 4 cut(s) 248, 547, 1397, 1619
AcoI YGGCCR 2 cut(s) 380, 1199
AcsI RAATTY 4 cut(s) 711, 763, 812, 1341
AfaI GTAC 4 cut(s) 23, 280, 407, 502
AfiI CCNNNNNNNGG 3 cut(s) 356, 497, 1328
AflIII ACRYGT 1 cut(s) 1260
AgsI TTSAA 8 cut(s) 45, 134, 191, 762, 932, 978, 988, 1668
AjnI CCWGG 3 cut(s) 490, 856, 1243
AjuI GAANNNNNNNTTGG 2 cut(s) 1163, 1195
Alw26I GTCTC 2 cut(s) 752, 1432
AlwI GGATC 4 cut(s) 248, 547, 1397, 1619
AlwNI CAGNNNCTG 3 cut(s) 340, 1115, 1724
Ama87I CYCGRG 1 cut(s) 664
AoxI GGCC 2 cut(s) 380, 1199
ApeKI GCWGC 4 cut(s) 958, 1385, 1388, 1439
ApoI RAATTY 4 cut(s) 711, 763, 812, 1341
ArsI GACNNNNNNTTYG 2 cut(s) 672, 704
AspS9I GGNCC 2 cut(s) 634, 881
AsuC2I CCSGG 1 cut(s) 638
AsuHPI GGTGA 2 cut(s) 485, 833
AvaI CYCGRG 1 cut(s) 664
AvaII GGWCC 2 cut(s) 634, 881
BaeI ACNNNNGTAYC 2 cut(s) 625, 658
BalI TGGCCA 2 cut(s) 382, 1201
BbsI GAAGAC 1 cut(s) 1178
BbvI GCAGC 4 cut(s) 945, 1372, 1375, 1426
BccI CCATC 5 cut(s) 350, 372, 563, 1541, 1689
BceAI ACGGC 1 cut(s) 1689
BcgI CGANNNNNNTGC 2 cut(s) 1055, 1089
BciT130I CCWGG 3 cut(s) 492, 858, 1245
BciVI GTATCC 3 cut(s) 653, 857, 1527
BcnI CCSGG 1 cut(s) 638
BcoDI GTCTC 2 cut(s) 752, 1432
BfaI CTAG 2 cut(s) 701, 1623
BfmI CTRYAG 1 cut(s) 959
BfuI GTATCC 3 cut(s) 653, 857, 1527
BisI GCNGC 4 cut(s) 959, 1386, 1389, 1440
BlpI GCTNAGC 1 cut(s) 1299
BlsI GCNGC 4 cut(s) 960, 1387, 1390, 1441
Bme1390I CCNGG 4 cut(s) 492, 638, 858, 1245
Bme18I GGWCC 2 cut(s) 634, 881
BmeT110I CYCGRG 1 cut(s) 664
BmgT120I GGNCC 2 cut(s) 634, 881
BmiI GGNNCC 2 cut(s) 345, 1152
BmrFI CCNGG 4 cut(s) 492, 638, 858, 1245
BmsI GCATC 5 cut(s) 531, 738, 782, 1063, 1736
BpiI GAAGAC 1 cut(s) 1178
BpmI CTGGAG 3 cut(s) 854, 1017, 1266
Bpu10I CCTNAGC 2 cut(s) 461, 1161
Bpu1102I GCTNAGC 1 cut(s) 1299
BpuEI CTTGAG 3 cut(s) 669, 772, 1124
BpuMI CCSGG 1 cut(s) 638
BsaAI YACGTR 1 cut(s) 1543
BsaJI CCNNGG 4 cut(s) 257, 637, 665, 803
BsaXI ACNNNNNCTCC 2 cut(s) 1690, 1720
Bsc4I CCNNNNNNNGG 3 cut(s) 356, 497, 1328
Bse1I ACTGG 4 cut(s) 601, 691, 887, 1499
Bse3DI GCAATG 1 cut(s) 781
BseBI CCWGG 3 cut(s) 492, 858, 1245
BseDI CCNNGG 4 cut(s) 257, 637, 665, 803
BseLI CCNNNNNNNGG 3 cut(s) 356, 497, 1328
BseMI GCAATG 1 cut(s) 781
BseMII CTCAG 2 cut(s) 24, 1682
BseNI ACTGG 4 cut(s) 601, 691, 887, 1499
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 4 cut(s) 945, 1372, 1375, 1426
BseYI CCCAGC 1 cut(s) 615
Bsh1236I CGCG 2 cut(s) 1325, 1644
BshFI GGCC 2 cut(s) 382, 1201
BsiHKCI CYCGRG 1 cut(s) 664
BsiSI CCGG 1 cut(s) 637
BslFI GGGAC 2 cut(s) 586, 932
BslI CCNNNNNNNGG 3 cut(s) 356, 497, 1328
BsmAI GTCTC 2 cut(s) 752, 1432
BsmBI CGTCTC 2 cut(s) 752, 1432
BsmFI GGGAC 2 cut(s) 586, 932
BsnI GGCC 2 cut(s) 382, 1201
BsoBI CYCGRG 1 cut(s) 664
Bsp143I GATC 9 cut(s) 253, 535, 552, 941, 1402, 1465, 1476, 1531, 1611
Bsp1720I GCTNAGC 1 cut(s) 1299
BspACI CCGC 3 cut(s) 1082, 1323, 1626
BspANI GGCC 2 cut(s) 382, 1201
BspCNI CTCAG 2 cut(s) 25, 1683
BspFNI CGCG 2 cut(s) 1325, 1644
BspHI TCATGA 2 cut(s) 1416, 1489
BspLI GGNNCC 2 cut(s) 345, 1152
BspMAI CTGCAG 1 cut(s) 963
BspPI GGATC 4 cut(s) 248, 547, 1397, 1619
BspQI GCTCTTC 1 cut(s) 927
BsrDI GCAATG 1 cut(s) 781
BsrI ACTGG 4 cut(s) 601, 691, 887, 1499
BssECI CCNNGG 4 cut(s) 257, 637, 665, 803
BssMI GATC 9 cut(s) 253, 535, 552, 941, 1402, 1465, 1476, 1531, 1611
BssNAI GTATAC 1 cut(s) 1125
BssT1I CCWWGG 1 cut(s) 257
Bst1107I GTATAC 1 cut(s) 1125
Bst2UI CCWGG 3 cut(s) 492, 858, 1245
Bst4CI ACNGT 4 cut(s) 64, 652, 845, 905
Bst6I CTCTTC 3 cut(s) 192, 927, 1435
BstBAI YACGTR 1 cut(s) 1543
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 7 cut(s) 33, 169, 461, 851, 1161, 1299, 1691
BstDSI CCRYGG 1 cut(s) 803
BstFNI CGCG 2 cut(s) 1325, 1644
BstKTI GATC 9 cut(s) 256, 538, 555, 944, 1405, 1468, 1479, 1534, 1614
BstMAI GTCTC 2 cut(s) 752, 1432
BstMBI GATC 9 cut(s) 253, 535, 552, 941, 1402, 1465, 1476, 1531, 1611
BstMWI GCNNNNNNNGC 4 cut(s) 621, 792, 1650, 1679
BstNI CCWGG 3 cut(s) 492, 858, 1245
BstSCI CCNGG 4 cut(s) 490, 636, 856, 1243
BstSFI CTRYAG 1 cut(s) 959
BstUI CGCG 2 cut(s) 1325, 1644
BstV1I GCAGC 4 cut(s) 945, 1372, 1375, 1426
BstV2I GAAGAC 1 cut(s) 1178
BstX2I RGATCY 1 cut(s) 1611
BstXI CCANNNNNNTGG 2 cut(s) 264, 426
BstYI RGATCY 1 cut(s) 1611
BstZ17I GTATAC 1 cut(s) 1125
BsuI GTATCC 3 cut(s) 653, 857, 1527
BsuRI GGCC 2 cut(s) 382, 1201
BtgI CCRYGG 1 cut(s) 803
BtsI GCAGTG 3 cut(s) 229, 341, 1365
BtsIMutI CAGTG 6 cut(s) 229, 249, 341, 529, 594, 1365
Cac8I GCNNGC 1 cut(s) 613
CaiI CAGNNNCTG 3 cut(s) 340, 1115, 1724
CciI TCATGA 2 cut(s) 1416, 1489
Cfr13I GGNCC 2 cut(s) 634, 881
CsiI ACCWGGT 1 cut(s) 856
Csp6I GTAC 4 cut(s) 22, 279, 406, 501
CviAII CATG 5 cut(s) 298, 515, 1271, 1417, 1490
CviQI GTAC 4 cut(s) 22, 279, 406, 501
DdeI CTNAG 7 cut(s) 33, 169, 461, 851, 1161, 1299, 1691
DpnI GATC 9 cut(s) 255, 537, 554, 943, 1404, 1467, 1478, 1533, 1613
DpnII GATC 9 cut(s) 253, 535, 552, 941, 1402, 1465, 1476, 1531, 1611
DraI TTTAAA 1 cut(s) 1267
EaeI YGGCCR 2 cut(s) 380, 1199
Eam1104I CTCTTC 3 cut(s) 192, 927, 1435
EarI CTCTTC 3 cut(s) 192, 927, 1435
Eco130I CCWWGG 1 cut(s) 257
Eco32I GATATC 1 cut(s) 1012
Eco47I GGWCC 2 cut(s) 634, 881
Eco88I CYCGRG 1 cut(s) 664
EcoRI GAATTC 1 cut(s) 711
EcoRII CCWGG 3 cut(s) 490, 856, 1243
EcoRV GATATC 1 cut(s) 1012
EcoT14I CCWWGG 1 cut(s) 257
EcoT22I ATGCAT 1 cut(s) 1078
ErhI CCWWGG 1 cut(s) 257
Esp3I CGTCTC 2 cut(s) 752, 1432
FaeI CATG 5 cut(s) 301, 518, 1274, 1420, 1493
FaqI GGGAC 2 cut(s) 586, 932
FatI CATG 5 cut(s) 297, 514, 1270, 1416, 1489
FauI CCCGC 3 cut(s) 1089, 1330, 1619
FauNDI CATATG 1 cut(s) 421
FblI GTMKAC 1 cut(s) 1124
Fnu4HI GCNGC 4 cut(s) 959, 1386, 1389, 1440
Fsp4HI GCNGC 4 cut(s) 959, 1386, 1389, 1440
FspBI CTAG 2 cut(s) 701, 1623
GluI GCNGC 4 cut(s) 959, 1386, 1389, 1440
GsaI CCCAGC 1 cut(s) 619
GsuI CTGGAG 3 cut(s) 854, 1017, 1266
HaeIII GGCC 2 cut(s) 382, 1201
HapII CCGG 1 cut(s) 637
Hin1II CATG 5 cut(s) 301, 518, 1274, 1420, 1493
HincII GTYRAC 1 cut(s) 892
HindII GTYRAC 1 cut(s) 892
HindIII AAGCTT 1 cut(s) 1503
HpaII CCGG 1 cut(s) 637
HphI GGTGA 2 cut(s) 485, 833
Hpy166II GTNNAC 7 cut(s) 86, 807, 841, 884, 892, 1125, 1557
Hpy188I TCNGA 8 cut(s) 214, 540, 1237, 1336, 1347, 1481, 1564, 1792
Hpy8I GTNNAC 7 cut(s) 86, 807, 841, 884, 892, 1125, 1557
Hpy99I CGWCG 1 cut(s) 1516
HpyAV CCTTC 2 cut(s) 31, 768
HpyCH4III ACNGT 4 cut(s) 64, 652, 845, 905
HpyCH4IV ACGT 6 cut(s) 706, 745, 1260, 1514, 1542, 1618
HpyCH4V TGCA 7 cut(s) 149, 249, 544, 961, 1076, 1442, 1727
HpyF10VI GCNNNNNNNGC 4 cut(s) 621, 792, 1650, 1679
HpyF3I CTNAG 7 cut(s) 33, 169, 461, 851, 1161, 1299, 1691
HpySE526I ACGT 6 cut(s) 706, 745, 1260, 1514, 1542, 1618
Hsp92II CATG 5 cut(s) 301, 518, 1274, 1420, 1493
Kzo9I GATC 9 cut(s) 253, 535, 552, 941, 1402, 1465, 1476, 1531, 1611
LguI GCTCTTC 1 cut(s) 927
LmnI GCTCC 1 cut(s) 301
Lsp1109I GCAGC 4 cut(s) 945, 1372, 1375, 1426
LweI GCATC 5 cut(s) 531, 738, 782, 1063, 1736
MabI ACCWGGT 1 cut(s) 856
MaeI CTAG 2 cut(s) 701, 1623
MaeII ACGT 6 cut(s) 706, 745, 1260, 1514, 1542, 1618
MaeIII GTNAC 4 cut(s) 224, 1091, 1256, 1317
MalI GATC 9 cut(s) 255, 537, 554, 943, 1404, 1467, 1478, 1533, 1613
MboI GATC 9 cut(s) 253, 535, 552, 941, 1402, 1465, 1476, 1531, 1611
MfeI CAATTG 1 cut(s) 1668
MflI RGATCY 1 cut(s) 1611
MlsI TGGCCA 2 cut(s) 382, 1201
MluCI AATT 9 cut(s) 129, 454, 711, 763, 812, 965, 1341, 1668, 1798
MluNI TGGCCA 2 cut(s) 382, 1201
MlyI GAGTC 3 cut(s) 176, 528, 1730
MmeI TCCRAC 2 cut(s) 612, 887
Mox20I TGGCCA 2 cut(s) 382, 1201
Mph1103I ATGCAT 1 cut(s) 1078
MscI TGGCCA 2 cut(s) 382, 1201
MseI TTAA 3 cut(s) 432, 1266, 1801
MslI CAYNNNNRTG 1 cut(s) 1545
Msp20I TGGCCA 2 cut(s) 382, 1201
MspI CCGG 1 cut(s) 637
MspR9I CCNGG 4 cut(s) 492, 638, 858, 1245
MssI GTTTAAAC 1 cut(s) 1267
MunI CAATTG 1 cut(s) 1668
MvaI CCWGG 3 cut(s) 492, 858, 1245
MvnI CGCG 2 cut(s) 1325, 1644
MwoI GCNNNNNNNGC 4 cut(s) 621, 792, 1650, 1679
NciI CCSGG 1 cut(s) 638
NdeI CATATG 1 cut(s) 421
NdeII GATC 9 cut(s) 253, 535, 552, 941, 1402, 1465, 1476, 1531, 1611
NlaIII CATG 5 cut(s) 301, 518, 1274, 1420, 1493
NlaIV GGNNCC 2 cut(s) 345, 1152
NmuCI GTSAC 2 cut(s) 224, 1091
NsiI ATGCAT 1 cut(s) 1078
PagI TCATGA 2 cut(s) 1416, 1489
PciSI GCTCTTC 1 cut(s) 927
PfeI GAWTC 8 cut(s) 73, 158, 721, 1112, 1184, 1230, 1646, 1664
PflFI GACNNNGTC 1 cut(s) 309
PfoI TCCNGGA 1 cut(s) 1243
PkrI GCNGC 4 cut(s) 960, 1387, 1390, 1441
PleI GAGTC 3 cut(s) 176, 527, 1729
PmeI GTTTAAAC 1 cut(s) 1267
PpsI GAGTC 3 cut(s) 176, 527, 1729
Ppu21I YACGTR 1 cut(s) 1543
Psp6I CCWGG 3 cut(s) 490, 856, 1243
PspFI CCCAGC 1 cut(s) 615
PspGI CCWGG 3 cut(s) 490, 856, 1243
PspN4I GGNNCC 2 cut(s) 345, 1152
PspPI GGNCC 2 cut(s) 634, 881
PstI CTGCAG 1 cut(s) 963
PstNI CAGNNNCTG 3 cut(s) 340, 1115, 1724
PsuI RGATCY 1 cut(s) 1611
PsyI GACNNNGTC 1 cut(s) 309
RsaI GTAC 4 cut(s) 23, 280, 407, 502
RsaNI GTAC 4 cut(s) 22, 279, 406, 501
RseI CAYNNNNRTG 1 cut(s) 1545
SapI GCTCTTC 1 cut(s) 927
SaqAI TTAA 3 cut(s) 432, 1266, 1801
SatI GCNGC 4 cut(s) 959, 1386, 1389, 1440
Sau3AI GATC 9 cut(s) 253, 535, 552, 941, 1402, 1465, 1476, 1531, 1611
Sau96I GGNCC 2 cut(s) 634, 881
SchI GAGTC 3 cut(s) 176, 528, 1730
ScrFI CCNGG 4 cut(s) 492, 638, 858, 1245
SexAI ACCWGGT 1 cut(s) 856
SfaNI GCATC 5 cut(s) 531, 738, 782, 1063, 1736
SfcI CTRYAG 1 cut(s) 959
SinI GGWCC 2 cut(s) 634, 881
SmiMI CAYNNNNRTG 1 cut(s) 1545
SmlI CTYRAG 3 cut(s) 684, 787, 1103
SmoI CTYRAG 3 cut(s) 684, 787, 1103
Sse9I AATT 9 cut(s) 129, 454, 711, 763, 812, 965, 1341, 1668, 1798
SsiI CCGC 3 cut(s) 1082, 1323, 1626
SspMI CTAG 2 cut(s) 701, 1623
StyD4I CCNGG 4 cut(s) 490, 636, 856, 1243
StyI CCWWGG 1 cut(s) 257
TaaI ACNGT 4 cut(s) 64, 652, 845, 905
TaiI ACGT 6 cut(s) 709, 748, 1263, 1517, 1545, 1621
TaqI TCGA 3 cut(s) 534, 1511, 1649
TasI AATT 9 cut(s) 129, 454, 711, 763, 812, 965, 1341, 1668, 1798
TfiI GAWTC 8 cut(s) 73, 158, 721, 1112, 1184, 1230, 1646, 1664
Tru1I TTAA 3 cut(s) 432, 1266, 1801
Tru9I TTAA 3 cut(s) 432, 1266, 1801
TscAI CASTG 6 cut(s) 229, 256, 341, 529, 601, 1372
TseFI GTSAC 2 cut(s) 224, 1091
TseI GCWGC 4 cut(s) 958, 1385, 1388, 1439
Tsp45I GTSAC 2 cut(s) 224, 1091
TspDTI ATGAA 9 cut(s) 17, 286, 472, 578, 756, 1376, 1433, 1598, 1764
TspGWI ACGGA 2 cut(s) 792, 1190
TspRI CASTG 6 cut(s) 229, 256, 341, 529, 601, 1372
Tth111I GACNNNGTC 1 cut(s) 309
VpaK11BI GGWCC 2 cut(s) 634, 881
XapI RAATTY 4 cut(s) 711, 763, 812, 1341
XbaI TCTAGA 1 cut(s) 700
XcmI CCANNNNNNNNNTGG 2 cut(s) 375, 1116
XmiI GTMKAC 1 cut(s) 1124
XspI CTAG 2 cut(s) 701, 1623
Zsp2I ATGCAT 1 cut(s) 1078
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.