Rorug07G0141500

methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
11154493 .. 11155384
892 bp
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UTR
Exon/CDS
Intron
Rorug07G0141500.1

Sequence Viewer

Length: 288 bp
ATGGAAAATACAAAAAGCGAATCATACTTTGTTTTCATGAATTATGATCCTCAATACGCTCGCCTTCGATCTGATCGAAAGAAAGGGACGTCAAATGAGCTTGATCTGTATCTAAGCCGGAAGCATGATGAGCTATTGGAAAGCACCCTTGAACCAGGAACTTACAGGAAGACATTGTCTCTGGTTATTGTTGATGGCTTTGCTGTGGAAATTACTGAGGACCAGGCAAGTAAGCTTAGATCTGCAAAGGAAGTGAGATTGGTGGAGAAAAATCAAGAGATTGCTTAA

Protein Analysis

95

Amino Acids

11.04

Weight (kDa)

5.45

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 92
AclWI GGATC 1 cut(s) 41
AcyI GRCGYC 1 cut(s) 89
AgsI TTSAA 1 cut(s) 152
AjnI CCWGG 2 cut(s) 154, 222
AluBI AGCT 3 cut(s) 100, 133, 235
AluI AGCT 3 cut(s) 100, 133, 235
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 220
AvaII GGWCC 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 176
BccI CCATC 1 cut(s) 188
BciT130I CCWGG 2 cut(s) 156, 224
BcoDI GTCTC 1 cut(s) 183
BglII AGATCT 1 cut(s) 239
Bme1390I CCNGG 2 cut(s) 156, 224
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmrFI CCNGG 2 cut(s) 156, 224
BpiI GAAGAC 1 cut(s) 176
BsaBI GATNNNNATC 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 89
Bse8I GATNNNNATC 1 cut(s) 108
BseBI CCWGG 2 cut(s) 156, 224
BseJI GATNNNNATC 1 cut(s) 108
BseMII CTCAG 1 cut(s) 207
BsiSI CCGG 1 cut(s) 118
BslFI GGGAC 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 183
BsmFI GGGAC 1 cut(s) 100
Bsp143I GATC 5 cut(s) 46, 68, 73, 103, 239
BspCNI CTCAG 1 cut(s) 208
BspHI TCATGA 1 cut(s) 36
BspPI GGATC 1 cut(s) 41
BssMI GATC 5 cut(s) 46, 68, 73, 103, 239
BssNI GRCGYC 1 cut(s) 89
Bst2UI CCWGG 2 cut(s) 156, 224
BstACI GRCGYC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 3 cut(s) 113, 216, 236
BstKTI GATC 5 cut(s) 49, 71, 76, 106, 242
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 5 cut(s) 46, 68, 73, 103, 239
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstNI CCWGG 2 cut(s) 156, 224
BstSCI CCNGG 2 cut(s) 154, 222
BstV2I GAAGAC 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
Cac8I GCNNGC 1 cut(s) 61
CciI TCATGA 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 220
CviAII CATG 2 cut(s) 37, 125
CviJI RGCY 5 cut(s) 100, 117, 133, 198, 235
CviKI_1 RGCY 5 cut(s) 100, 117, 133, 198, 235
DdeI CTNAG 3 cut(s) 113, 216, 236
DpnI GATC 5 cut(s) 48, 70, 75, 105, 241
DpnII GATC 5 cut(s) 46, 68, 73, 103, 239
Eco47I GGWCC 1 cut(s) 220
EcoRII CCWGG 2 cut(s) 154, 222
FaeI CATG 2 cut(s) 40, 128
FaiI YATR 4 cut(s) 25, 38, 45, 126
FaqI GGGAC 1 cut(s) 100
FatI CATG 2 cut(s) 36, 124
HapII CCGG 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 2 cut(s) 40, 128
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 1 cut(s) 20
HpaII CCGG 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 2 cut(s) 37, 275
HpyAV CCTTC 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 3 cut(s) 113, 216, 236
HpySE526I ACGT 1 cut(s) 89
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 2 cut(s) 40, 128
Kzo9I GATC 5 cut(s) 46, 68, 73, 103, 239
LpnPI CCDG 7 cut(s) 131, 141, 151, 167, 168, 209, 236
MaeII ACGT 1 cut(s) 89
MalI GATC 5 cut(s) 48, 70, 75, 105, 241
MboI GATC 5 cut(s) 46, 68, 73, 103, 239
MboII GAAGA 1 cut(s) 181
MflI RGATCY 1 cut(s) 239
MluCI AATT 2 cut(s) 40, 210
MnlI CCTC 2 cut(s) 60, 211
MseI TTAA 1 cut(s) 286
MspI CCGG 1 cut(s) 118
MspR9I CCNGG 2 cut(s) 156, 224
MvaI CCWGG 2 cut(s) 156, 224
MwoI GCNNNNNNNGC 1 cut(s) 130
NdeII GATC 5 cut(s) 46, 68, 73, 103, 239
NlaIII CATG 2 cut(s) 40, 128
PagI TCATGA 1 cut(s) 36
PcsI WCGNNNNNNNCGW 1 cut(s) 73
PfeI GAWTC 1 cut(s) 20
PflFI GACNNNGTC 1 cut(s) 175
Psp6I CCWGG 2 cut(s) 154, 222
PspGI CCWGG 2 cut(s) 154, 222
PspPI GGNCC 1 cut(s) 220
PsuI RGATCY 1 cut(s) 239
PsyI GACNNNGTC 1 cut(s) 175
SaqAI TTAA 1 cut(s) 286
Sau3AI GATC 5 cut(s) 46, 68, 73, 103, 239
Sau96I GGNCC 1 cut(s) 220
ScrFI CCNGG 2 cut(s) 156, 224
SetI ASST 4 cut(s) 92, 102, 135, 237
SinI GGWCC 1 cut(s) 220
Sse9I AATT 2 cut(s) 40, 210
StyD4I CCNGG 2 cut(s) 154, 222
TaiI ACGT 1 cut(s) 92
TaqI TCGA 2 cut(s) 67, 76
TasI AATT 2 cut(s) 40, 210
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 1 cut(s) 286
Tru9I TTAA 1 cut(s) 286
TspDTI ATGAA 2 cut(s) 25, 53
Tth111I GACNNNGTC 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 220
ZraI GACGTC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.