MD00G1001500.v1.1

Putative S-adenosyl-L-methionine-dependent methyltransferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
294208 .. 299600
5393 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1001500.v1.1.491

Sequence Viewer

Length: 1782 bp
ATGAAACATAAAGATGGAAAACCGGGACCCCAAGGTACCAGGGTTTTCCCTACGACAATCTTGTTTGTTTTGCTATGCGGGCTTTCATTCTATCTTGGTGGAATCTTCTGCTCTGAGAAAAACAAAATTGAGCCTGTCAAGGTCGAAGATGTCACAAAGGCAGTTCAATCATCTCTCCATGTAAAACCTGTTACCTTTGCTGAATGCAGCAGTGACTATCAAGACTACACCCCGTGCACGGATCCAAGGAGGTGGAGAAAATATGGTGTTCATCGGCTTACTTTCATGGAACGGCACTGCCCTCCAGTATTTGAGAGGAAAGAATGCTTAGTTCCACCTCCAGATGGCTACAAGCTACCAATCAGATGGCCAAATAGCAGGGACGAATGTTGGTACAGGAATGTGCCATATGATTGGATTAACAAACAGAAGTCCAATCAGAATTGGCTGAGAAAAGAAGGGGAGAAGTTTTTCTTTCCTGGTGGGGGAACTATGTTTCCTAGAGGCGTTTCTGCATATGTCGATTTGATGCAAGATCTTATTCCAGAAATGAAAGATGGGACTGTTCGAACTGCCATTGATACTGGGTGTGGAGTTGCAAGTTGGGGAGGTGATTTGTTAGATCGTGGGATTTTAACTGTTTCTCTCGCCCCAAGAGATAATCATGAAGCTCAGGTTCAGTTTGCTCTGGAGCGTGGAATTCCTGCCATTCTTGGCATCATTTCTACACAGAGACTTCCTTTCCCTTCAAACTCATTTGATATGGCTCACTGCTCAAGATGCCTCATCCCATGGACGGAATTTGGTGGAATTTACCTTCTAGAAATTCATCGTATACTCCGTCCTGGAGGTTTTTGGGTCCTGTCTGGTCCACCTGTCAACTACGAAAACCACTGGCGTGGGTGGAACACAACCATAGAAGAGCAGAAATCAGATTATGAAAAGTTGCAAGAACTGCTAACTTCACTGTGCTTTAAATTGTACAACAAGAAGGATGATATTGCTGTTTGGCAGAAACAGTCAGACAGCAGTTGCTACAATAAACTTTCTGAGCCTGACACCTATCCTGCAAAATGTGATGATAGCCTCGAACCAGATTCAGGATGGTACACTCCATTACGCTCTTGTGTTGTAGTTCCAGACCCAAAGCTAAAAAAGTCAGCTTTGAAAGCCATCCCTCGATGGCCAGAGCGGTTGCATGTTGCACCAGAGCGTATATCTGATGTGCATGGTGGGAGTGCTAGTGCTTTCAAGCATGATGACAGAAATTGGAGGGTTCGAATGAAGCATTACAAAAAGTTGCTCCCGGCAATTGGAACAGATAAGATCAGAAATGTTATGGACATGAATACAGCATATGGTGGTTTTGCCGCAGCCACGATTGAATATCCCTTGTGGGTCATGAATGTCGTCTCTTCCTATGCTGCAAATACATTACCTGTGGTCTATGATCGAGGCCTTATCGGAACTTTCCATGATTGGTGTGAAGCTTTTTCTACTTATCCTCGAACTTATGATCTTCTACATCTTGATGGCTTCTTTACTGCCGAAAGCCACAGATGCGAAATGAAATATGTGCTCTTAGAGATGGACCGAATCCTGCGACCTAATGGCTATGCAATAGTTCGAGAATCCAGCTACTTAGTGGATGCTGTTGCGGCTATTGCCAAAGGGATGAGATGGGGATGCCGCAAAGAAAATACTGAGTATGGCATTGAGAAGGAGAAAATATTGATATGCCAGAAAAAACTCTGGTATTCATCGAATCAAACTTCCAGATGA

Protein Analysis

594

Amino Acids

68.01

Weight (kDa)

8.55

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_29 PF03141 75 - 582 5.7e-214 Putative S-adenosyl-L-methionine-dependent methyltransferase
Methyltransf_11 PF08241 194 - 287 4.5e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 35
AccBSI CCGCTC 1 cut(s) 1192
AccI GTMKAC 1 cut(s) 835
AciI CCGC 5 cut(s) 78, 1192, 1371, 1658, 1690
AclWI GGATC 2 cut(s) 236, 249
AcoI YGGCCR 2 cut(s) 368, 1184
AcsI RAATTY 4 cut(s) 699, 800, 810, 825
AdeI CACNNNGTG 1 cut(s) 234
AfaI GTAC 4 cut(s) 37, 395, 983, 1109
AfiI CCNNNNNNNGG 6 cut(s) 238, 344, 485, 796, 1100, 1313
AgsI TTSAA 5 cut(s) 167, 750, 1168, 1252, 1385
AjnI CCWGG 3 cut(s) 38, 478, 844
AleI CACNNNNGTG 1 cut(s) 897
AloI GAACNNNNNNTCC 2 cut(s) 481, 513
AluBI AGCT 6 cut(s) 355, 671, 1150, 1163, 1490, 1638
AluI AGCT 6 cut(s) 355, 671, 1150, 1163, 1490, 1638
Alw21I GWGCWC 2 cut(s) 239, 1581
Alw26I GTCTC 2 cut(s) 727, 1417
Alw44I GTGCAC 1 cut(s) 235
AlwI GGATC 2 cut(s) 236, 249
AoxI GGCC 3 cut(s) 368, 1184, 1456
ApaLI GTGCAC 1 cut(s) 235
ApeKI GCWGC 3 cut(s) 207, 1373, 1424
ApoI RAATTY 4 cut(s) 699, 800, 810, 825
Asp700I GAANNNNTTC 1 cut(s) 470
Asp718I GGTACC 1 cut(s) 35
AspS9I GGNCC 4 cut(s) 26, 859, 869, 1591
AsuC2I CCSGG 2 cut(s) 24, 1307
AsuHPI GGTGA 1 cut(s) 623
AsuII TTCGAA 2 cut(s) 568, 1279
AvaII GGWCC 4 cut(s) 26, 859, 869, 1591
BaeGI GKGCMC 1 cut(s) 239
BaeI ACNNNNGTAYC 2 cut(s) 27, 60
BalI TGGCCA 2 cut(s) 370, 1186
BamHI GGATCC 1 cut(s) 241
BanI GGYRCC 1 cut(s) 35
Bbv12I GWGCWC 2 cut(s) 239, 1581
BbvI GCAGC 3 cut(s) 219, 1385, 1411
BceAI ACGGC 1 cut(s) 308
BciT130I CCWGG 3 cut(s) 40, 480, 846
BcnI CCSGG 2 cut(s) 24, 1307
BcoDI GTCTC 2 cut(s) 727, 1417
BfaI CTAG 3 cut(s) 501, 821, 1242
BglII AGATCT 1 cut(s) 535
BisI GCNGC 6 cut(s) 208, 1371, 1374, 1425, 1659, 1690
BlsI GCNGC 6 cut(s) 209, 1372, 1375, 1426, 1660, 1691
Bme1390I CCNGG 5 cut(s) 24, 40, 480, 846, 1307
Bme18I GGWCC 4 cut(s) 26, 859, 869, 1591
BmgT120I GGNCC 4 cut(s) 26, 859, 869, 1591
BmiI GGNNCC 5 cut(s) 27, 28, 37, 243, 860
BmrFI CCNGG 5 cut(s) 24, 40, 480, 846, 1307
BmrI ACTGGG 1 cut(s) 594
BmsI GCATC 6 cut(s) 519, 726, 770, 1550, 1639, 1676
BmuI ACTGGG 1 cut(s) 594
BpmI CTGGAG 4 cut(s) 288, 324, 710, 867
Bpu10I CCTNAGC 1 cut(s) 672
Bpu14I TTCGAA 2 cut(s) 568, 1279
BpuEI CTTGAG 1 cut(s) 760
BpuMI CCSGG 2 cut(s) 24, 1307
BsaJI CCNNGG 4 cut(s) 31, 39, 245, 791
BsaXI ACNNNNNCTCC 2 cut(s) 1228, 1258
Bsc4I CCNNNNNNNGG 6 cut(s) 238, 344, 485, 796, 1100, 1313
Bse1I ACTGG 3 cut(s) 305, 589, 899
BseBI CCWGG 3 cut(s) 40, 480, 846
BseDI CCNNGG 4 cut(s) 31, 39, 245, 791
BseGI GGATG 7 cut(s) 786, 1000, 1109, 1173, 1654, 1680, 1691
BseLI CCNNNNNNNGG 6 cut(s) 238, 344, 485, 796, 1100, 1313
BseMII CTCAG 5 cut(s) 105, 440, 686, 1041, 1695
BseNI ACTGG 3 cut(s) 305, 589, 899
BseSI GKGCMC 1 cut(s) 239
BseXI GCAGC 3 cut(s) 219, 1385, 1411
BshFI GGCC 3 cut(s) 370, 1186, 1458
BshNI GGYRCC 1 cut(s) 35
BsiHKAI GWGCWC 2 cut(s) 239, 1581
BsiSI CCGG 2 cut(s) 23, 1307
BslFI GGGAC 3 cut(s) 39, 395, 574
BslI CCNNNNNNNGG 6 cut(s) 238, 344, 485, 796, 1100, 1313
BsmAI GTCTC 2 cut(s) 727, 1417
BsmBI CGTCTC 1 cut(s) 1417
BsmFI GGGAC 3 cut(s) 39, 395, 574
BsmI GAATGC 2 cut(s) 209, 329
BsnI GGCC 3 cut(s) 370, 1186, 1458
Bsp119I TTCGAA 2 cut(s) 568, 1279
Bsp1286I GDGCHC 2 cut(s) 239, 1581
Bsp1407I TGTACA 1 cut(s) 981
Bsp143I GATC 6 cut(s) 241, 535, 622, 1326, 1450, 1516
Bsp19I CCATGG 1 cut(s) 791
BspACI CCGC 5 cut(s) 78, 1192, 1371, 1658, 1690
BspANI GGCC 3 cut(s) 370, 1186, 1458
BspCNI CTCAG 5 cut(s) 106, 441, 685, 1042, 1696
BspHI TCATGA 2 cut(s) 664, 1401
BspLI GGNNCC 5 cut(s) 27, 28, 37, 243, 860
BspPI GGATC 2 cut(s) 236, 249
BspQI GCTCTTC 1 cut(s) 915
BspT104I TTCGAA 2 cut(s) 568, 1279
BspT107I GGYRCC 1 cut(s) 35
BsrBI CCGCTC 1 cut(s) 1192
BsrGI TGTACA 1 cut(s) 981
BsrI ACTGG 3 cut(s) 305, 589, 899
BssECI CCNNGG 4 cut(s) 31, 39, 245, 791
BssMI GATC 6 cut(s) 241, 535, 622, 1326, 1450, 1516
BssNAI GTATAC 1 cut(s) 836
BssT1I CCWWGG 3 cut(s) 31, 245, 791
Bst1107I GTATAC 1 cut(s) 836
Bst2UI CCWGG 3 cut(s) 40, 480, 846
Bst4CI ACNGT 4 cut(s) 565, 640, 969, 1020
Bst6I CTCTTC 2 cut(s) 915, 1420
BstAPI GCANNNNNTGC 1 cut(s) 955
BstAUI TGTACA 1 cut(s) 981
BstBI TTCGAA 2 cut(s) 568, 1279
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 8 cut(s) 114, 328, 449, 672, 1050, 1582, 1642, 1704
BstDSI CCRYGG 1 cut(s) 791
BstF5I GGATG 7 cut(s) 786, 1000, 1109, 1173, 1654, 1680, 1691
BstKTI GATC 6 cut(s) 244, 538, 625, 1329, 1453, 1519
BstMAI GTCTC 2 cut(s) 727, 1417
BstMBI GATC 6 cut(s) 241, 535, 622, 1326, 1450, 1516
BstMWI GCNNNNNNNGC 7 cut(s) 79, 780, 955, 1169, 1560, 1658, 1664
BstNI CCWGG 3 cut(s) 40, 480, 846
BstNSI RCATGY 1 cut(s) 1202
BstSCI CCNGG 5 cut(s) 22, 38, 478, 844, 1305
BstSLI GKGCMC 1 cut(s) 239
BstV1I GCAGC 3 cut(s) 219, 1385, 1411
BstX2I RGATCY 2 cut(s) 241, 535
BstXI CCANNNNNNTGG 4 cut(s) 252, 366, 414, 899
BstYI RGATCY 2 cut(s) 241, 535
BstZ17I GTATAC 1 cut(s) 836
BsuRI GGCC 3 cut(s) 370, 1186, 1458
BtgI CCRYGG 1 cut(s) 791
BtsCI GGATG 7 cut(s) 786, 1000, 1109, 1173, 1654, 1680, 1691
BtsI GCAGTG 3 cut(s) 217, 295, 769
BtsIMutI CAGTG 5 cut(s) 217, 295, 769, 892, 965
Cac8I GCNNGC 1 cut(s) 80
CciI TCATGA 2 cut(s) 664, 1401
Cfr13I GGNCC 4 cut(s) 26, 859, 869, 1591
Csp6I GTAC 4 cut(s) 36, 394, 982, 1108
CviQI GTAC 4 cut(s) 36, 394, 982, 1108
DdeI CTNAG 8 cut(s) 114, 328, 449, 672, 1050, 1582, 1642, 1704
DpnI GATC 6 cut(s) 243, 537, 624, 1328, 1452, 1518
DpnII GATC 6 cut(s) 241, 535, 622, 1326, 1450, 1516
DraI TTTAAA 1 cut(s) 976
DraIII CACNNNGTG 1 cut(s) 234
EaeI YGGCCR 2 cut(s) 368, 1184
Eam1104I CTCTTC 2 cut(s) 915, 1420
EarI CTCTTC 2 cut(s) 915, 1420
Eco130I CCWWGG 3 cut(s) 31, 245, 791
Eco147I AGGCCT 1 cut(s) 1458
Eco47I GGWCC 4 cut(s) 26, 859, 869, 1591
EcoO109I RGGNCCY 2 cut(s) 26, 859
EcoRI GAATTC 1 cut(s) 699
EcoRII CCWGG 3 cut(s) 38, 478, 844
EcoT14I CCWWGG 3 cut(s) 31, 245, 791
ErhI CCWWGG 3 cut(s) 31, 245, 791
Esp3I CGTCTC 1 cut(s) 1417
FalI AAGNNNNNCTT 2 cut(s) 458, 490
FaqI GGGAC 3 cut(s) 39, 395, 574
FauI CCCGC 1 cut(s) 71
FauNDI CATATG 3 cut(s) 409, 517, 1357
FblI GTMKAC 1 cut(s) 835
Fnu4HI GCNGC 6 cut(s) 208, 1371, 1374, 1425, 1659, 1690
FokI GGATG 7 cut(s) 773, 1007, 1116, 1160, 1661, 1687, 1698
Fsp4HI GCNGC 6 cut(s) 208, 1371, 1374, 1425, 1659, 1690
FspBI CTAG 3 cut(s) 501, 821, 1242
GluI GCNGC 6 cut(s) 208, 1371, 1374, 1425, 1659, 1690
GsuI CTGGAG 4 cut(s) 288, 324, 710, 867
HaeIII GGCC 3 cut(s) 370, 1186, 1458
HapII CCGG 2 cut(s) 23, 1307
HincII GTYRAC 1 cut(s) 880
HindII GTYRAC 1 cut(s) 880
HindIII AAGCTT 1 cut(s) 1488
HinfI GANTC 5 cut(s) 102, 1097, 1596, 1631, 1765
HpaII CCGG 2 cut(s) 23, 1307
HphI GGTGA 1 cut(s) 623
Hpy166II GTNNAC 5 cut(s) 237, 836, 872, 880, 1110
Hpy188I TCNGA 9 cut(s) 115, 365, 441, 934, 1024, 1051, 1222, 1331, 1466
Hpy8I GTNNAC 5 cut(s) 237, 836, 872, 880, 1110
HpyAV CCTTC 5 cut(s) 452, 756, 827, 985, 1714
HpyCH4III ACNGT 4 cut(s) 565, 640, 969, 1020
HpyF10VI GCNNNNNNNGC 7 cut(s) 79, 780, 955, 1169, 1560, 1658, 1664
HpyF3I CTNAG 8 cut(s) 114, 328, 449, 672, 1050, 1582, 1642, 1704
KflI GGGWCCC 1 cut(s) 26
KpnI GGTACC 1 cut(s) 39
Kzo9I GATC 6 cut(s) 241, 535, 622, 1326, 1450, 1516
LguI GCTCTTC 1 cut(s) 915
LmnI GCTCC 2 cut(s) 691, 1308
Lsp1109I GCAGC 3 cut(s) 219, 1385, 1411
LweI GCATC 6 cut(s) 519, 726, 770, 1550, 1639, 1676
MaeI CTAG 3 cut(s) 501, 821, 1242
MaeIII GTNAC 3 cut(s) 151, 190, 212
MalI GATC 6 cut(s) 243, 537, 624, 1328, 1452, 1518
MbiI CCGCTC 1 cut(s) 1192
MboI GATC 6 cut(s) 241, 535, 622, 1326, 1450, 1516
MboII GAAGA 5 cut(s) 97, 158, 932, 1407, 1511
MfeI CAATTG 1 cut(s) 1311
MflI RGATCY 2 cut(s) 241, 535
MhlI GDGCHC 2 cut(s) 239, 1581
MlsI TGGCCA 2 cut(s) 370, 1186
MluCI AATT 9 cut(s) 126, 442, 699, 800, 810, 825, 977, 1267, 1311
MluNI TGGCCA 2 cut(s) 370, 1186
Mox20I TGGCCA 2 cut(s) 370, 1186
MroXI GAANNNNTTC 1 cut(s) 470
MscI TGGCCA 2 cut(s) 370, 1186
MseI TTAA 3 cut(s) 420, 635, 975
MslI CAYNNNNRTG 3 cut(s) 12, 897, 1530
Msp20I TGGCCA 2 cut(s) 370, 1186
MspI CCGG 2 cut(s) 23, 1307
MspR9I CCNGG 5 cut(s) 24, 40, 480, 846, 1307
MunI CAATTG 1 cut(s) 1311
Mva1269I GAATGC 2 cut(s) 209, 329
MvaI CCWGG 3 cut(s) 40, 480, 846
MwoI GCNNNNNNNGC 7 cut(s) 79, 780, 955, 1169, 1560, 1658, 1664
NciI CCSGG 2 cut(s) 24, 1307
NcoI CCATGG 1 cut(s) 791
NdeI CATATG 3 cut(s) 409, 517, 1357
NdeII GATC 6 cut(s) 241, 535, 622, 1326, 1450, 1516
NlaIV GGNNCC 5 cut(s) 27, 28, 37, 243, 860
NmuCI GTSAC 2 cut(s) 151, 212
NspI RCATGY 1 cut(s) 1202
NspV TTCGAA 2 cut(s) 568, 1279
OliI CACNNNNGTG 1 cut(s) 897
PagI TCATGA 2 cut(s) 664, 1401
PceI AGGCCT 1 cut(s) 1458
PciSI GCTCTTC 1 cut(s) 915
PcsI WCGNNNNNNNCGW 1 cut(s) 838
PctI GAATGC 2 cut(s) 209, 329
PdmI GAANNNNTTC 1 cut(s) 470
PfeI GAWTC 5 cut(s) 102, 1097, 1596, 1631, 1765
PfoI TCCNGGA 1 cut(s) 844
PkrI GCNGC 6 cut(s) 209, 1372, 1375, 1426, 1660, 1691
PpuMI RGGWCCY 2 cut(s) 26, 859
Psp5II RGGWCCY 2 cut(s) 26, 859
Psp6I CCWGG 3 cut(s) 38, 478, 844
PspGI CCWGG 3 cut(s) 38, 478, 844
PspN4I GGNNCC 5 cut(s) 27, 28, 37, 243, 860
PspPI GGNCC 4 cut(s) 26, 859, 869, 1591
PspPPI RGGWCCY 2 cut(s) 26, 859
PsuI RGATCY 2 cut(s) 241, 535
RsaI GTAC 4 cut(s) 37, 395, 983, 1109
RsaNI GTAC 4 cut(s) 36, 394, 982, 1108
RseI CAYNNNNRTG 3 cut(s) 12, 897, 1530
SapI GCTCTTC 1 cut(s) 915
SaqAI TTAA 3 cut(s) 420, 635, 975
SatI GCNGC 6 cut(s) 208, 1371, 1374, 1425, 1659, 1690
Sau3AI GATC 6 cut(s) 241, 535, 622, 1326, 1450, 1516
Sau96I GGNCC 4 cut(s) 26, 859, 869, 1591
ScrFI CCNGG 5 cut(s) 24, 40, 480, 846, 1307
SduI GDGCHC 2 cut(s) 239, 1581
SfaNI GCATC 6 cut(s) 519, 726, 770, 1550, 1639, 1676
SfuI TTCGAA 2 cut(s) 568, 1279
SinI GGWCC 4 cut(s) 26, 859, 869, 1591
SmiMI CAYNNNNRTG 3 cut(s) 12, 897, 1530
SmlI CTYRAG 1 cut(s) 775
SmoI CTYRAG 1 cut(s) 775
Sse9I AATT 9 cut(s) 126, 442, 699, 800, 810, 825, 977, 1267, 1311
SseBI AGGCCT 1 cut(s) 1458
SsiI CCGC 5 cut(s) 78, 1192, 1371, 1658, 1690
SspI AATATT 1 cut(s) 1731
SspMI CTAG 3 cut(s) 501, 821, 1242
StuI AGGCCT 1 cut(s) 1458
StyD4I CCNGG 5 cut(s) 22, 38, 478, 844, 1305
StyI CCWWGG 3 cut(s) 31, 245, 791
TaaI ACNGT 4 cut(s) 565, 640, 969, 1020
TaqII GACCGA 1 cut(s) 1608
TasI AATT 9 cut(s) 126, 442, 699, 800, 810, 825, 977, 1267, 1311
TatI WGTACW 1 cut(s) 981
TauI GCSGC 3 cut(s) 1373, 1661, 1692
TfiI GAWTC 5 cut(s) 102, 1097, 1596, 1631, 1765
Tru1I TTAA 3 cut(s) 420, 635, 975
Tru9I TTAA 3 cut(s) 420, 635, 975
TscAI CASTG 5 cut(s) 217, 302, 776, 899, 972
TseFI GTSAC 2 cut(s) 151, 212
TseI GCWGC 3 cut(s) 207, 1373, 1424
Tsp45I GTSAC 2 cut(s) 151, 212
TspGWI ACGGA 3 cut(s) 254, 812, 830
TspRI CASTG 5 cut(s) 217, 302, 776, 899, 972
VneI GTGCAC 1 cut(s) 235
VpaK11BI GGWCC 4 cut(s) 26, 859, 869, 1591
XapI RAATTY 4 cut(s) 699, 800, 810, 825
XbaI TCTAGA 1 cut(s) 820
XceI RCATGY 1 cut(s) 1202
XcmI CCANNNNNNNNNTGG 2 cut(s) 1101, 1642
XmiI GTMKAC 1 cut(s) 835
XmnI GAANNNNTTC 1 cut(s) 470
XspI CTAG 3 cut(s) 501, 821, 1242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.