AT4G19360

cytoplasmic mRNA processing body assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011745
Physical Location & Seq
Forward (+)
10564159 .. 10565437
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19360.1

Sequence Viewer

Length: 807 bp
ATGAAAACTGTGACTTCTCAGCATCCTTCTTCATTGTCACCACCATCTTTTCTTCCTCCACAAATTCCCGTCGAAGCGTACATAGGAAGTTTCGTCACTCTGATTGCTAACTTCGATATACGTTACGAAGGCATACTCTGTTTTCTCAATCTCCAAGAGTCGACTCTAGGTCTTCAAAACGTGGTATGTTATGGAACAGAAGGAAGGAACCAAAACGGAGTTCAAATTCCTCCGGATACTAAAATTCAGAATTACATTCTTTTCAACGGAAATAACATTAAGGAAATAATAGTTCAGCCTCCTACTTGGGGTTTAGCAAGAGGATCTACATGTAGTAAATCTTGTCTTGCCCCAAACCCACCGCTTCCTATAATTGTCTCACCAAACAATCGATCCGACGATAAGATACTCCAACAATTTCCATTGATCTCGAATGAAAATCTCATTCAACCGCAAGCTAAGACAGAGTCGAATGCTTTCTCAGTTAATGGATCAGTCAATGATAGATTTCCCATTGCTTCTCAACCACAGTTTCCTTCATACTTCTATGACCCTTATGTTTACCAGTCTATGCCTTATGCTGAACTTAGTCAAGCTCCTATATGGACGAATATTATGCATGACTCATCTGCCTTCAAGAATTCTGTAAGATATGATTTTGAGGCAATGACTAAGAACGCTAAGCAGTACAACATATGGGGTCCTTCCCAAACCAAGGAAGAAGAGAGTTCAAAGCCTACTTATAACATTGATGGATCTTCTTACAAGATCTCGCGCACTCCGTTTGAGCCTATTGGGAGACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0032501 GO:0032502 GO:0048856 GO:0050896 GO:0090351
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FDF Kelch_1 LSM14

Protein Analysis

268

Amino Acids

30.0

Weight (kDa)

5.75

Isoelectric Point (pI)

60.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM14 PF12701 27 - 98 1.4e-21 Scd6-like Sm domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 744
AccI GTMKAC 1 cut(s) 161
AccII CGCG 1 cut(s) 775
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 2 cut(s) 362, 452
AclWI GGATC 4 cut(s) 331, 387, 499, 763
AcsI RAATTY 4 cut(s) 63, 225, 243, 640
AfaI GTAC 2 cut(s) 80, 689
AfiI CCNNNNNNNGG 2 cut(s) 308, 715
AflIII ACRYGT 1 cut(s) 329
AgsI TTSAA 6 cut(s) 176, 224, 265, 449, 637, 732
AhdI GACNNNNNGTC 1 cut(s) 168
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AluBI AGCT 2 cut(s) 458, 596
AluI AGCT 2 cut(s) 458, 596
Alw26I GTCTC 2 cut(s) 382, 793
AlwI GGATC 4 cut(s) 331, 387, 499, 763
Aor13HI TCCGGA 1 cut(s) 232
ApoI RAATTY 4 cut(s) 63, 225, 243, 640
Asp700I GAANNNNTTC 1 cut(s) 476
AspLEI GCGC 1 cut(s) 777
AspS9I GGNCC 1 cut(s) 701
AsuHPI GGTGA 2 cut(s) 30, 372
AvaII GGWCC 1 cut(s) 701
BbsI GAAGAC 1 cut(s) 164
BccI CCATC 2 cut(s) 52, 746
BcgI CGANNNNNNTGC 2 cut(s) 598, 632
BciVI GTATCC 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 382, 793
BfaI CTAG 1 cut(s) 167
BfuI GTATCC 1 cut(s) 229
BglII AGATCT 1 cut(s) 768
BlpI GCTNAGC 1 cut(s) 681
Bme18I GGWCC 1 cut(s) 701
BmeRI GACNNNNNGTC 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 701
BmiI GGNNCC 2 cut(s) 209, 702
BmsI GCATC 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 164
Bpu1102I GCTNAGC 1 cut(s) 681
Bsa29I ATCGAT 1 cut(s) 391
BsaI GGTCTC 1 cut(s) 793
BsaJI CCNNGG 1 cut(s) 714
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 2 cut(s) 308, 715
Bse1I ACTGG 1 cut(s) 565
Bse3DI GCAATG 2 cut(s) 513, 672
BseAI TCCGGA 1 cut(s) 232
BseCI ATCGAT 1 cut(s) 391
BseDI CCNNGG 1 cut(s) 714
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 2 cut(s) 308, 715
BseMI GCAATG 2 cut(s) 513, 672
BseMII CTCAG 2 cut(s) 32, 495
BseNI ACTGG 1 cut(s) 565
Bsh1236I CGCG 1 cut(s) 775
BshVI ATCGAT 1 cut(s) 391
BsiSI CCGG 1 cut(s) 233
BslI CCNNNNNNNGG 2 cut(s) 308, 715
BsmAI GTCTC 2 cut(s) 382, 793
BsmI GAATGC 1 cut(s) 478
Bso31I GGTCTC 1 cut(s) 793
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 6 cut(s) 323, 392, 426, 491, 755, 768
Bsp1720I GCTNAGC 1 cut(s) 681
BspACI CCGC 2 cut(s) 362, 452
BspCNI CTCAG 2 cut(s) 31, 494
BspDI ATCGAT 1 cut(s) 391
BspEI TCCGGA 1 cut(s) 232
BspFNI CGCG 1 cut(s) 775
BspLI GGNNCC 2 cut(s) 209, 702
BspPI GGATC 4 cut(s) 331, 387, 499, 763
BspTNI GGTCTC 1 cut(s) 793
BsrDI GCAATG 2 cut(s) 513, 672
BsrI ACTGG 1 cut(s) 565
BssECI CCNNGG 1 cut(s) 714
BssMI GATC 6 cut(s) 323, 392, 426, 491, 755, 768
BssT1I CCWWGG 1 cut(s) 714
Bst4CI ACNGT 2 cut(s) 10, 531
Bst6I CTCTTC 1 cut(s) 717
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 6 cut(s) 18, 459, 481, 587, 672, 681
BstF5I GGATG 1 cut(s) 22
BstFNI CGCG 1 cut(s) 775
BstHHI GCGC 1 cut(s) 777
BstKTI GATC 6 cut(s) 326, 395, 429, 494, 758, 771
BstMAI GTCTC 2 cut(s) 382, 793
BstMBI GATC 6 cut(s) 323, 392, 426, 491, 755, 768
BstNSI RCATGY 1 cut(s) 333
BstUI CGCG 1 cut(s) 775
BstV2I GAAGAC 1 cut(s) 164
BstX2I RGATCY 3 cut(s) 323, 755, 768
BstYI RGATCY 3 cut(s) 323, 755, 768
Bsu15I ATCGAT 1 cut(s) 391
BsuI GTATCC 1 cut(s) 229
BsuTUI ATCGAT 1 cut(s) 391
BtsCI GGATG 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 456
CfoI GCGC 1 cut(s) 777
Cfr13I GGNCC 1 cut(s) 701
ClaI ATCGAT 1 cut(s) 391
Csp6I GTAC 2 cut(s) 79, 688
CviAII CATG 2 cut(s) 330, 620
CviJI RGCY 5 cut(s) 298, 458, 596, 736, 790
CviKI_1 RGCY 5 cut(s) 298, 458, 596, 736, 790
CviQI GTAC 2 cut(s) 79, 688
DdeI CTNAG 6 cut(s) 18, 459, 481, 587, 672, 681
DpnI GATC 6 cut(s) 325, 394, 428, 493, 757, 770
DpnII GATC 6 cut(s) 323, 392, 426, 491, 755, 768
DriI GACNNNNNGTC 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 717
Eam1105I GACNNNNNGTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 717
Eco130I CCWWGG 1 cut(s) 714
Eco31I GGTCTC 1 cut(s) 793
Eco47I GGWCC 1 cut(s) 701
EcoO109I RGGNCCY 1 cut(s) 701
EcoRI GAATTC 1 cut(s) 640
EcoT14I CCWWGG 1 cut(s) 714
EcoT22I ATGCAT 1 cut(s) 621
ErhI CCWWGG 1 cut(s) 714
FaeI CATG 2 cut(s) 333, 623
FatI CATG 2 cut(s) 329, 619
FauNDI CATATG 1 cut(s) 695
FblI GTMKAC 1 cut(s) 161
FokI GGATG 1 cut(s) 9
FspBI CTAG 1 cut(s) 167
GlaI GCGC 1 cut(s) 776
HapII CCGG 1 cut(s) 233
HhaI GCGC 1 cut(s) 777
Hin1II CATG 2 cut(s) 333, 623
Hin6I GCGC 1 cut(s) 775
HinP1I GCGC 1 cut(s) 775
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HinfI GANTC 4 cut(s) 158, 163, 467, 623
HpaII CCGG 1 cut(s) 233
HphI GGTGA 2 cut(s) 30, 372
Hpy166II GTNNAC 2 cut(s) 162, 562
Hpy188I TCNGA 3 cut(s) 102, 249, 397
Hpy188III TCNNGA 3 cut(s) 233, 430, 637
Hpy8I GTNNAC 2 cut(s) 162, 562
Hpy99I CGWCG 2 cut(s) 74, 401
HpyAV CCTTC 7 cut(s) 36, 122, 194, 198, 546, 643, 714
HpyCH4III ACNGT 2 cut(s) 10, 531
HpyCH4IV ACGT 2 cut(s) 121, 180
HpyCH4V TGCA 1 cut(s) 619
HpyF3I CTNAG 6 cut(s) 18, 459, 481, 587, 672, 681
HpySE526I ACGT 2 cut(s) 121, 180
Hsp92II CATG 2 cut(s) 333, 623
HspAI GCGC 1 cut(s) 775
Kpn2I TCCGGA 1 cut(s) 232
Kzo9I GATC 6 cut(s) 323, 392, 426, 491, 755, 768
LmnI GCTCC 1 cut(s) 601
LpnPI CCDG 2 cut(s) 246, 578
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 167
MaeII ACGT 2 cut(s) 121, 180
MaeIII GTNAC 4 cut(s) 10, 36, 94, 122
MalI GATC 6 cut(s) 325, 394, 428, 493, 757, 770
MboI GATC 6 cut(s) 323, 392, 426, 491, 755, 768
MboII GAAGA 6 cut(s) 21, 44, 164, 731, 734, 750
MflI RGATCY 3 cut(s) 323, 755, 768
MluCI AATT 7 cut(s) 63, 225, 243, 250, 372, 416, 640
MlyI GAGTC 4 cut(s) 157, 167, 476, 617
MmeI TCCRAC 2 cut(s) 420, 436
MnlI CCTC 5 cut(s) 66, 240, 309, 314, 655
Mph1103I ATGCAT 1 cut(s) 621
MroI TCCGGA 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 476
MseI TTAA 2 cut(s) 279, 486
MspI CCGG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 478
MvnI CGCG 1 cut(s) 775
NdeI CATATG 1 cut(s) 695
NdeII GATC 6 cut(s) 323, 392, 426, 491, 755, 768
NlaIII CATG 2 cut(s) 333, 623
NlaIV GGNNCC 2 cut(s) 209, 702
NmuCI GTSAC 3 cut(s) 10, 36, 94
NsiI ATGCAT 1 cut(s) 621
NspI RCATGY 1 cut(s) 333
PciI ACATGT 1 cut(s) 329
PcsI WCGNNNNNNNCGW 1 cut(s) 779
PctI GAATGC 1 cut(s) 478
PdmI GAANNNNTTC 1 cut(s) 476
PflFI GACNNNGTC 1 cut(s) 466
PleI GAGTC 4 cut(s) 157, 166, 475, 617
PpsI GAGTC 4 cut(s) 157, 166, 475, 617
PpuMI RGGWCCY 1 cut(s) 701
PscI ACATGT 1 cut(s) 329
PsiI TTATAA 1 cut(s) 744
Psp5II RGGWCCY 1 cut(s) 701
PspN4I GGNNCC 2 cut(s) 209, 702
PspPI GGNCC 1 cut(s) 701
PspPPI RGGWCCY 1 cut(s) 701
PsuI RGATCY 3 cut(s) 323, 755, 768
PsyI GACNNNGTC 1 cut(s) 466
RsaI GTAC 2 cut(s) 80, 689
RsaNI GTAC 2 cut(s) 79, 688
SalI GTCGAC 1 cut(s) 160
SaqAI TTAA 2 cut(s) 279, 486
Sau3AI GATC 6 cut(s) 323, 392, 426, 491, 755, 768
Sau96I GGNCC 1 cut(s) 701
SchI GAGTC 4 cut(s) 157, 167, 476, 617
SetI ASST 6 cut(s) 124, 172, 183, 460, 598, 805
SfaNI GCATC 1 cut(s) 31
SinI GGWCC 1 cut(s) 701
Sse9I AATT 7 cut(s) 63, 225, 243, 250, 372, 416, 640
SsiI CCGC 2 cut(s) 362, 452
SspI AATATT 1 cut(s) 613
SspMI CTAG 1 cut(s) 167
StyI CCWWGG 1 cut(s) 714
TaaI ACNGT 2 cut(s) 10, 531
TaiI ACGT 2 cut(s) 124, 183
TaqI TCGA 6 cut(s) 72, 114, 161, 391, 431, 470
TasI AATT 7 cut(s) 63, 225, 243, 250, 372, 416, 640
TatI WGTACW 1 cut(s) 687
Tru1I TTAA 2 cut(s) 279, 486
Tru9I TTAA 2 cut(s) 279, 486
TseFI GTSAC 3 cut(s) 10, 36, 94
Tsp45I GTSAC 3 cut(s) 10, 36, 94
TspDTI ATGAA 4 cut(s) 17, 21, 450, 528
TspGWI ACGGA 3 cut(s) 231, 282, 771
Tth111I GACNNNGTC 1 cut(s) 466
VpaK11BI GGWCC 1 cut(s) 701
XapI RAATTY 4 cut(s) 63, 225, 243, 640
XceI RCATGY 1 cut(s) 333
XmiI GTMKAC 1 cut(s) 161
XmnI GAANNNNTTC 1 cut(s) 476
XspI CTAG 1 cut(s) 167
Zsp2I ATGCAT 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.