Rmu_co8413003.1_g000001

FDF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8413003.1
OG0011745
Physical Location & Seq
Reverse (-)
1 .. 514
514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8413003.1_g000001.1.cds

Sequence Viewer

Length: 166 bp
atggccgcagcaacagtagaagctcagccatccagatcttcatcaaatgggcctgcagattcctacatcggcagcctgatcagcctcacctccaagtccgaaattcgctacgagggtgtcctcttcaacatcaatacccaagagtccagcatcggcttgagaaatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FDF LSM14

Protein Analysis

55

Amino Acids

5.82

Weight (kDa)

5.0

Isoelectric Point (pI)

65.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 6
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 102
AgsI TTSAA 1 cut(s) 127
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
AoxI GGCC 2 cut(s) 3, 50
ApeKI GCWGC 2 cut(s) 8, 72
ApoI RAATTY 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 79
BbvI GCAGC 2 cut(s) 20, 84
BccI CCATC 1 cut(s) 37
BclI TGATCA 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 54
BglII AGATCT 1 cut(s) 35
BisI GCNGC 3 cut(s) 6, 9, 73
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 3 cut(s) 7, 10, 74
BmgT120I GGNCC 1 cut(s) 50
BmsI GCATC 1 cut(s) 159
Bpu1102I GCTNAGC 1 cut(s) 24
BsaBI GATNNNNATC 1 cut(s) 40
Bse8I GATNNNNATC 1 cut(s) 40
BseGI GGATG 1 cut(s) 29
BseJI GATNNNNATC 1 cut(s) 40
BseMII CTCAG 1 cut(s) 38
BseXI GCAGC 2 cut(s) 20, 84
BshFI GGCC 2 cut(s) 5, 52
BsnI GGCC 2 cut(s) 5, 52
Bsp143I GATC 2 cut(s) 35, 78
Bsp1720I GCTNAGC 1 cut(s) 24
BspACI CCGC 1 cut(s) 6
BspANI GGCC 2 cut(s) 5, 52
BspCNI CTCAG 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 58
BssMI GATC 2 cut(s) 35, 78
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 29
BstKTI GATC 2 cut(s) 38, 81
BstMBI GATC 2 cut(s) 35, 78
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 20, 84
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BsuRI GGCC 2 cut(s) 5, 52
BtsCI GGATG 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 50
CviJI RGCY 7 cut(s) 5, 23, 28, 52, 75, 84, 156
CviKI_1 RGCY 7 cut(s) 5, 23, 28, 52, 75, 84, 156
DdeI CTNAG 1 cut(s) 24
DpnI GATC 2 cut(s) 37, 80
DpnII GATC 2 cut(s) 35, 78
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
FbaI TGATCA 1 cut(s) 78
Fnu4HI GCNGC 3 cut(s) 6, 9, 73
FokI GGATG 1 cut(s) 16
Fsp4HI GCNGC 3 cut(s) 6, 9, 73
GluI GCNGC 3 cut(s) 6, 9, 73
HaeIII GGCC 2 cut(s) 5, 52
HinfI GANTC 2 cut(s) 59, 143
HphI GGTGA 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 33
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 2 cut(s) 35, 78
LpnPI CCDG 4 cut(s) 46, 66, 89, 160
Lsp1109I GCAGC 2 cut(s) 20, 84
LweI GCATC 1 cut(s) 159
MalI GATC 2 cut(s) 37, 80
MboI GATC 2 cut(s) 35, 78
MboII GAAGA 2 cut(s) 30, 115
MflI RGATCY 1 cut(s) 35
MluCI AATT 1 cut(s) 102
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 4 cut(s) 95, 100, 106, 131
MwoI GCNNNNNNNGC 1 cut(s) 81
NdeII GATC 2 cut(s) 35, 78
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 3 cut(s) 7, 10, 74
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 50
PstI CTGCAG 1 cut(s) 58
PsuI RGATCY 1 cut(s) 35
SatI GCNGC 3 cut(s) 6, 9, 73
Sau3AI GATC 2 cut(s) 35, 78
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 1 cut(s) 152
SetI ASST 2 cut(s) 25, 92
SfaNI GCATC 1 cut(s) 159
SfcI CTRYAG 1 cut(s) 54
SgeI CNNG 7 cut(s) 45, 65, 88, 106, 124, 152, 159
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 1 cut(s) 102
SsiI CCGC 1 cut(s) 6
TaaI ACNGT 1 cut(s) 16
TasI AATT 1 cut(s) 102
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 59
TseI GCWGC 2 cut(s) 8, 72
TspDTI ATGAA 1 cut(s) 30
XapI RAATTY 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.