Rh2CG406800

FDF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011745
Physical Location & Seq
Forward (+)
55357583 .. 55358910
1328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG406800.1

Sequence Viewer

Length: 300 bp
ATGGTACCCCAAATAGCTAGCCCGACCCAACTTTCGTACATGCGGTCCATGATGGCGTTAACAGTCATGCCCACGTGCAATTTTAGATGGGTATTTGGGTCATATCCTTACCGAACCTTATTTGTGTCCTCCACCGAAGCCAGACGCACATCCCTTCTTCCTTCCCTCGTCGCCTCTTTCATCTTTGATTCTTCCGCAATGATAGAAGCTCAGCCATCCAAATCTTCATCAAATGGACCTGCAGATTCCTACATCGGCAGCCTGATTAGCCTCACCTCTAAGTTCAAAATTCGCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FDF LSM14

Protein Analysis

99

Amino Acids

11.01

Weight (kDa)

9.8

Isoelectric Point (pI)

63.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 247
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 2 cut(s) 43, 195
AcsI RAATTY 1 cut(s) 288
AcvI CACGTG 1 cut(s) 75
AfaI GTAC 2 cut(s) 6, 38
AgsI TTSAA 1 cut(s) 286
AluBI AGCT 2 cut(s) 17, 209
AluI AGCT 2 cut(s) 17, 209
ApeKI GCWGC 1 cut(s) 258
ApoI RAATTY 1 cut(s) 288
ArsI GACNNNNNNTTYG 2 cut(s) 16, 48
Asp718I GGTACC 1 cut(s) 4
AspS9I GGNCC 2 cut(s) 45, 236
AsuHPI GGTGA 1 cut(s) 265
AsuNHI GCTAGC 1 cut(s) 17
AvaII GGWCC 2 cut(s) 45, 236
BanI GGYRCC 1 cut(s) 4
BbrPI CACGTG 1 cut(s) 75
BbvI GCAGC 1 cut(s) 270
BccI CCATC 3 cut(s) 46, 81, 223
BfaI CTAG 2 cut(s) 18, 298
BfmI CTRYAG 1 cut(s) 240
BfuAI ACCTGC 1 cut(s) 247
BisI GCNGC 1 cut(s) 259
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 260
Bme18I GGWCC 2 cut(s) 45, 236
BmgT120I GGNCC 2 cut(s) 45, 236
BmiI GGNNCC 1 cut(s) 6
BmtI GCTAGC 1 cut(s) 21
Bpu1102I GCTNAGC 1 cut(s) 210
BsaAI YACGTR 1 cut(s) 75
Bse3DI GCAATG 1 cut(s) 204
BseGI GGATG 2 cut(s) 149, 215
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 270
BshNI GGYRCC 1 cut(s) 4
Bsp1720I GCTNAGC 1 cut(s) 210
BspACI CCGC 2 cut(s) 43, 195
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 244
BspMI ACCTGC 1 cut(s) 247
BspOI GCTAGC 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 64
BstBAI YACGTR 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 2 cut(s) 210, 279
BstF5I GGATG 2 cut(s) 149, 215
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstNSI RCATGY 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 270
BtsCI GGATG 2 cut(s) 149, 215
BveI ACCTGC 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 45, 236
CseI GACGC 1 cut(s) 153
Csp6I GTAC 2 cut(s) 5, 37
CviAII CATG 3 cut(s) 40, 49, 67
CviJI RGCY 7 cut(s) 17, 21, 140, 209, 214, 261, 270
CviKI_1 RGCY 7 cut(s) 17, 21, 140, 209, 214, 261, 270
CviQI GTAC 2 cut(s) 5, 37
DdeI CTNAG 2 cut(s) 210, 279
Eco47I GGWCC 2 cut(s) 45, 236
Eco72I CACGTG 1 cut(s) 75
FaeI CATG 3 cut(s) 43, 52, 70
FaiI YATR 4 cut(s) 41, 50, 68, 103
FatI CATG 3 cut(s) 39, 48, 66
Fnu4HI GCNGC 1 cut(s) 259
FokI GGATG 2 cut(s) 136, 202
Fsp4HI GCNGC 1 cut(s) 259
FspBI CTAG 2 cut(s) 18, 298
GluI GCNGC 1 cut(s) 259
HgaI GACGC 1 cut(s) 153
Hin1II CATG 3 cut(s) 43, 52, 70
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HinfI GANTC 2 cut(s) 188, 245
HpaI GTTAAC 1 cut(s) 60
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 60
Hpy8I GTNNAC 1 cut(s) 60
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 2 cut(s) 164, 171
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 2 cut(s) 78, 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
HpyF3I CTNAG 2 cut(s) 210, 279
HpySE526I ACGT 1 cut(s) 74
Hsp92II CATG 3 cut(s) 43, 52, 70
KpnI GGTACC 1 cut(s) 8
KspAI GTTAAC 1 cut(s) 60
LpnPI CCDG 3 cut(s) 154, 252, 275
Lsp1109I GCAGC 1 cut(s) 270
MaeI CTAG 2 cut(s) 18, 298
MaeII ACGT 1 cut(s) 74
MboII GAAGA 3 cut(s) 149, 183, 216
MluCI AATT 2 cut(s) 79, 288
MnlI CCTC 5 cut(s) 139, 176, 184, 281, 286
MseI TTAA 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 267
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 3 cut(s) 43, 52, 70
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 43
PfeI GAWTC 2 cut(s) 188, 245
PkrI GCNGC 1 cut(s) 260
PmaCI CACGTG 1 cut(s) 75
PmlI CACGTG 1 cut(s) 75
Ppu21I YACGTR 1 cut(s) 75
PspCI CACGTG 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 45, 236
PstI CTGCAG 1 cut(s) 244
RsaI GTAC 2 cut(s) 6, 38
RsaNI GTAC 2 cut(s) 5, 37
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 1 cut(s) 259
Sau96I GGNCC 2 cut(s) 45, 236
SetI ASST 6 cut(s) 19, 77, 119, 211, 241, 278
SfcI CTRYAG 1 cut(s) 240
SinI GGWCC 2 cut(s) 45, 236
Sse9I AATT 2 cut(s) 79, 288
SsiI CCGC 2 cut(s) 43, 195
SspMI CTAG 2 cut(s) 18, 298
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 1 cut(s) 77
TasI AATT 2 cut(s) 79, 288
TfiI GAWTC 2 cut(s) 188, 245
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TseI GCWGC 1 cut(s) 258
TspDTI ATGAA 2 cut(s) 169, 216
VpaK11BI GGWCC 2 cut(s) 45, 236
XapI RAATTY 1 cut(s) 288
XceI RCATGY 1 cut(s) 43
XspI CTAG 2 cut(s) 18, 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.