Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012370

Physical Location & Seq

Genomic Coordinates Reverse (-)

12004726 .. 12006209

Gene Structure 1484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGTTGCGGTTGAAAGAGTTGAGAGTCTAGCAAAAAGCGGAATCATATCGATTCCAAAAGAATATATTCGTCCAAAAGAAGAGCTCGAGAGCATCAACGATGTTTTCCTAGAAGAGAAGAAAGAAGACGGTCCTCAAGTTCCCACAATCGATCTAAAGAACATCGAGTCAGACGATGAAAAGATCCGTGAGAATTGTATTGAGGAGCTGAAAAAGGCATCTTTGGATTGGGGAGTGATGCATTTGATCAACCATGGAATACCAGCTGATCTAATGGAGCGTGTCAAGAAAGCCGGAGAAGAGTTTTTCAGTTTGTCTGTGGAAGAGAAGGAGAAGTATGCAAACGATCAAGCCACTGGAAAGATTCAAGGCTATGGAAGTAAATTGGCTAACAACGCGAGTGGACAATTGGAATGGGAAGATTACTTCTTTCATCTTGCGTATCCTGAAGAGAAGAGAGATCTATCAATTTGGCCTAAGACACCAAGTGATTACATAGAAGCAACGAGTGAGTACGCGAAGTGTCTTCGTTTGCTAGCGACTAAAGTCTTCAAGGCTCTCTCTGTCGGTCTAGGTTTAGAGCCTGACCGTCTAGAGAAAGAAGTTGGTGGTTTAGAAGAGCTTCTTCTACAAATGAAGATAAATTACTATCCAAAATGTCCTCAGCCTGAGCTAGCACTCGGTGTGGAAGCTCACACCGATGTAAGCGCTTTAACTTTCATTCTACACAACATGGTTCCGGGTTTGCAGCTTTTCTACGAGGGCAAATGGGTCACTGCAAAATGTGTTCCTGATTCGATTGTGATGCACATTGGGGATACTTTGGAGATTCTTAGTAATGGGAAGTATAAGAGTATACTTCATCGTGGGTTGGTGAATAAGGAGAAGGTTAGGATTTCTTGGGCTGTGTTTTGTGAACCCCCAAAGGATAAGATTGTTCTTAAGCCGTTGCCGGAGATGGTGAGTGTTGAGTCTCCGGCTAAGTTTCCTCCACGGACTTTTGCTCAACATATTGAGCATAAGTTGTTTGGGAAGGAACAAGAGGAATTGGTATCCGAGAAAAATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009698 GO:0009699 GO:0009718 GO:0009719 GO:0009725 GO:0009753 GO:0009812 GO:0009813 GO:0009987 GO:0010023 GO:0010033 GO:0016043 GO:0016491 GO:0016705 GO:0016706 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0042440 GO:0044237 GO:0044249 GO:0044550 GO:0046148 GO:0046189 GO:0046283 GO:0046483 GO:0050589 GO:0050896 GO:0051213 GO:0055114 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

356

Amino Acids

40.4

Weight (kDa)

5.24

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	47 - 160	1.3e-25	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	212 - 307	6.7e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22880 AT4G22880 AT4G22880
fragaria_vesca	FvH4_5g01170
malus_domestica	MD03G1001100.v1.1 MD06G1071600.v1.1
prunus_persica	Prupe.5G086700_v2.0.a1
pyrus_communis	pycom06g06810
rosa_chinensis	RchiOBHm_Chr7g0199941
rosa_laevigata	RLG00000003758
rosa_multiflora	Rmu_sc0002748.1_g000005 Rmu_sc0008253.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256360
rosa_rugosa	Rorug07G0057200
rosa_samantha	Rh7AG182600 Rh7BG185400 Rh7CG192100 Rh7DG185500
rosa_wichuraiana	Rw7G016010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	856
AccII	CGCG	2 cut(s)	398, 518
AciI	CCGC	2 cut(s)	8, 39
AclWI	GGATC	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	468
AdeI	CACNNNGTG	2 cut(s)	488, 683
AfaI	GTAC	1 cut(s)	515
AfeI	AGCGCT	1 cut(s)	709
AflII	CTTAAG	1 cut(s)	941
AgsI	TTSAA	3 cut(s)	14, 368, 553
AluBI	AGCT	7 cut(s)	85, 208, 266, 622, 673, 692, 751
AluI	AGCT	7 cut(s)	85, 208, 266, 622, 673, 692, 751
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	978
AlwI	GGATC	1 cut(s)	178
Ama87I	CYCGRG	1 cut(s)	86
Aor51HI	AGCGCT	1 cut(s)	709
AoxI	GGCC	1 cut(s)	473
ApeKI	GCWGC	1 cut(s)	748
Asp700I	GAANNNNTTC	2 cut(s)	66, 621
AspLEI	GCGC	1 cut(s)	710
AspS9I	GGNCC	1 cut(s)	131
AsuC2I	CCSGG	1 cut(s)	741
AsuHPI	GGTGA	2 cut(s)	886, 973
AsuNHI	GCTAGC	2 cut(s)	535, 673
AvaI	CYCGRG	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	87
BarI	GAAGNNNNNNTAC	2 cut(s)	629, 661
BbsI	GAAGAC	3 cut(s)	132, 518, 541
Bbv12I	GWGCWC	1 cut(s)	87
BbvCI	CCTCAGC	1 cut(s)	663
BbvI	GCAGC	1 cut(s)	760
BccI	CCATC	1 cut(s)	952
BceAI	ACGGC	1 cut(s)	931
BcgI	CGANNNNNNTGC	2 cut(s)	787, 821
BciVI	GTATCC	3 cut(s)	453, 811, 1063
BclI	TGATCA	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	741
BcoDI	GTCTC	1 cut(s)	978
BfaI	CTAG	6 cut(s)	29, 110, 536, 572, 593, 674
BfoI	RGCGCY	1 cut(s)	711
BfrI	CTTAAG	1 cut(s)	941
BfuI	GTATCC	3 cut(s)	453, 811, 1063
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	1 cut(s)	749
BlsI	GCNGC	1 cut(s)	750
Bme1390I	CCNGG	1 cut(s)	741
Bme18I	GGWCC	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	738
BmrFI	CCNGG	1 cut(s)	741
BmsI	GCATC	4 cut(s)	102, 227, 228, 795
BmtI	GCTAGC	2 cut(s)	539, 677
BoxI	GACNNNNGTC	1 cut(s)	545
BpiI	GAAGAC	3 cut(s)	132, 518, 541
Bpu10I	CCTNAGC	2 cut(s)	663, 669
BpuEI	CTTGAG	1 cut(s)	120
BpuMI	CCSGG	1 cut(s)	741
Bsa29I	ATCGAT	2 cut(s)	50, 150
BsaJI	CCNNGG	2 cut(s)	253, 992
Bse1I	ACTGG	1 cut(s)	361
BseCI	ATCGAT	2 cut(s)	50, 150
BseDI	CCNNGG	2 cut(s)	253, 992
BseMII	CTCAG	2 cut(s)	660, 677
BseNI	ACTGG	1 cut(s)	361
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	760
Bsh1236I	CGCG	2 cut(s)	398, 518
BshFI	GGCC	1 cut(s)	475
BshVI	ATCGAT	2 cut(s)	50, 150
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	4 cut(s)	294, 740, 953, 977
BsmAI	GTCTC	1 cut(s)	978
BsnI	GGCC	1 cut(s)	475
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	6 cut(s)	151, 183, 246, 268, 346, 460
Bsp19I	CCATGG	1 cut(s)	253
BspACI	CCGC	2 cut(s)	8, 39
BspANI	GGCC	1 cut(s)	475
BspCNI	CTCAG	2 cut(s)	661, 676
BspDI	ATCGAT	2 cut(s)	50, 150
BspFNI	CGCG	2 cut(s)	398, 518
BspLI	GGNNCC	1 cut(s)	738
BspOI	GCTAGC	2 cut(s)	539, 677
BspPI	GGATC	1 cut(s)	178
BspQI	GCTCTTC	2 cut(s)	75, 612
BspTI	CTTAAG	1 cut(s)	941
BsrI	ACTGG	1 cut(s)	361
BssECI	CCNNGG	2 cut(s)	253, 992
BssMI	GATC	6 cut(s)	151, 183, 246, 268, 346, 460
BssNAI	GTATAC	1 cut(s)	857
BssT1I	CCWWGG	1 cut(s)	253
Bst1107I	GTATAC	1 cut(s)	857
Bst4CI	ACNGT	2 cut(s)	131, 590
Bst6I	CTCTTC	7 cut(s)	75, 108, 294, 318, 444, 449, 612
BstAFI	CTTAAG	1 cut(s)	941
BstC8I	GCNNGC	2 cut(s)	537, 675
BstDEI	CTNAG	5 cut(s)	477, 663, 669, 833, 981
BstDSI	CCRYGG	2 cut(s)	253, 992
BstFNI	CGCG	2 cut(s)	398, 518
BstH2I	RGCGCY	1 cut(s)	711
BstHHI	GCGC	1 cut(s)	710
BstKTI	GATC	6 cut(s)	154, 186, 249, 271, 349, 463
BstMAI	GTCTC	1 cut(s)	978
BstMBI	GATC	6 cut(s)	151, 183, 246, 268, 346, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstPAI	GACNNNNGTC	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	739
BstUI	CGCG	2 cut(s)	398, 518
BstV1I	GCAGC	1 cut(s)	760
BstV2I	GAAGAC	3 cut(s)	132, 518, 541
BstX2I	RGATCY	2 cut(s)	183, 460
BstYI	RGATCY	2 cut(s)	183, 460
BstZ17I	GTATAC	1 cut(s)	857
Bsu15I	ATCGAT	2 cut(s)	50, 150
BsuI	GTATCC	3 cut(s)	453, 811, 1063
BsuRI	GGCC	1 cut(s)	475
BsuTUI	ATCGAT	2 cut(s)	50, 150
BtgI	CCRYGG	2 cut(s)	253, 992
BtsI	GCAGTG	1 cut(s)	774
BtsIMutI	CAGTG	2 cut(s)	354, 774
Cac8I	GCNNGC	2 cut(s)	537, 675
CfoI	GCGC	1 cut(s)	710
Cfr13I	GGNCC	1 cut(s)	131
ClaI	ATCGAT	2 cut(s)	50, 150
Csp6I	GTAC	1 cut(s)	514
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviAII	CATG	2 cut(s)	254, 733
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	5 cut(s)	477, 663, 669, 833, 981
DpnI	GATC	6 cut(s)	153, 185, 248, 270, 348, 462
DpnII	GATC	6 cut(s)	151, 183, 246, 268, 346, 460
DraIII	CACNNNGTG	2 cut(s)	488, 683
Eam1104I	CTCTTC	7 cut(s)	75, 108, 294, 318, 444, 449, 612
EarI	CTCTTC	7 cut(s)	75, 108, 294, 318, 444, 449, 612
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	131
Eco47III	AGCGCT	1 cut(s)	709
Eco53kI	GAGCTC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	468
Eco88I	CYCGRG	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	253
EcoT22I	ATGCAT	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	2 cut(s)	257, 736
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FatI	CATG	2 cut(s)	253, 732
FbaI	TGATCA	1 cut(s)	246
FblI	GTMKAC	1 cut(s)	856
Fnu4HI	GCNGC	1 cut(s)	749
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	749
FspBI	CTAG	6 cut(s)	29, 110, 536, 572, 593, 674
GlaI	GCGC	1 cut(s)	709
GluI	GCNGC	1 cut(s)	749
HaeII	RGCGCY	1 cut(s)	711
HaeIII	GGCC	1 cut(s)	475
HapII	CCGG	4 cut(s)	294, 740, 953, 977
HhaI	GCGC	1 cut(s)	710
Hin1II	CATG	2 cut(s)	257, 736
Hin6I	GCGC	1 cut(s)	708
HinP1I	GCGC	1 cut(s)	708
HinfI	GANTC	8 cut(s)	25, 42, 52, 167, 364, 794, 829, 971
HpaII	CCGG	4 cut(s)	294, 740, 953, 977
HphI	GGTGA	2 cut(s)	886, 973
Hpy166II	GTNNAC	3 cut(s)	404, 857, 917
Hpy188I	TCNGA	2 cut(s)	172, 1057
Hpy188III	TCNNGA	5 cut(s)	88, 286, 446, 593, 791
Hpy8I	GTNNAC	3 cut(s)	404, 857, 917
HpyAV	CCTTC	3 cut(s)	322, 880, 1027
HpyCH4III	ACNGT	2 cut(s)	131, 590
HpyCH4V	TGCA	5 cut(s)	241, 341, 748, 779, 808
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	5 cut(s)	477, 663, 669, 833, 981
Hsp92II	CATG	2 cut(s)	257, 736
HspAI	GCGC	1 cut(s)	708
Ksp22I	TGATCA	1 cut(s)	246
Kzo9I	GATC	6 cut(s)	151, 183, 246, 268, 346, 460
LguI	GCTCTTC	2 cut(s)	75, 612
LmnI	GCTCC	2 cut(s)	205, 277
Lsp1109I	GCAGC	1 cut(s)	760
LweI	GCATC	4 cut(s)	102, 227, 228, 795
MaeI	CTAG	6 cut(s)	29, 110, 536, 572, 593, 674
MaeIII	GTNAC	1 cut(s)	772
MalI	GATC	6 cut(s)	153, 185, 248, 270, 348, 462
MboI	GATC	6 cut(s)	151, 183, 246, 268, 346, 460
MfeI	CAATTG	1 cut(s)	407
MflI	RGATCY	2 cut(s)	183, 460
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	6 cut(s)	193, 383, 407, 468, 643, 1046
MlyI	GAGTC	3 cut(s)	34, 176, 980
MnlI	CCTC	6 cut(s)	144, 196, 672, 754, 999, 1036
Mph1103I	ATGCAT	1 cut(s)	243
MroXI	GAANNNNTTC	2 cut(s)	66, 621
MseI	TTAA	3 cut(s)	713, 942, 1069
MslI	CAYNNNNRTG	1 cut(s)	699
MspA1I	CMGCKG	1 cut(s)	266
MspCI	CTTAAG	1 cut(s)	941
MspI	CCGG	4 cut(s)	294, 740, 953, 977
MspR9I	CCNGG	1 cut(s)	741
MunI	CAATTG	1 cut(s)	407
MvnI	CGCG	2 cut(s)	398, 518
MwoI	GCNNNNNNNGC	1 cut(s)	395
NciI	CCSGG	1 cut(s)	741
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	6 cut(s)	151, 183, 246, 268, 346, 460
NheI	GCTAGC	2 cut(s)	535, 673
NlaIII	CATG	2 cut(s)	257, 736
NlaIV	GGNNCC	1 cut(s)	738
NmuCI	GTSAC	1 cut(s)	772
NsiI	ATGCAT	1 cut(s)	243
PaeR7I	CTCGAG	1 cut(s)	86
PciSI	GCTCTTC	2 cut(s)	75, 612
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdmI	GAANNNNTTC	2 cut(s)	66, 621
PfeI	GAWTC	5 cut(s)	42, 52, 364, 794, 829
PkrI	GCNGC	1 cut(s)	750
PleI	GAGTC	3 cut(s)	33, 175, 979
PpsI	GAGTC	3 cut(s)	33, 175, 979
PshAI	GACNNNNGTC	1 cut(s)	545
Psp124BI	GAGCTC	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	738
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	2 cut(s)	183, 460
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
RseI	CAYNNNNRTG	1 cut(s)	699
SacI	GAGCTC	1 cut(s)	87
SapI	GCTCTTC	2 cut(s)	75, 612
SaqAI	TTAA	3 cut(s)	713, 942, 1069
SatI	GCNGC	1 cut(s)	749
Sau3AI	GATC	6 cut(s)	151, 183, 246, 268, 346, 460
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	3 cut(s)	34, 176, 980
ScrFI	CCNGG	1 cut(s)	741
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	9 cut(s)	87, 210, 268, 577, 624, 675, 694, 753, 891
SfaNI	GCATC	4 cut(s)	102, 227, 228, 795
Sfr274I	CTCGAG	1 cut(s)	86
SinI	GGWCC	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	699
SmlI	CTYRAG	3 cut(s)	86, 135, 941
SmoI	CTYRAG	3 cut(s)	86, 135, 941
Sse9I	AATT	6 cut(s)	193, 383, 407, 468, 643, 1046
SsiI	CCGC	2 cut(s)	8, 39
SspMI	CTAG	6 cut(s)	29, 110, 536, 572, 593, 674
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	739
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	2 cut(s)	131, 590
TaqI	TCGA	5 cut(s)	50, 87, 150, 165, 797
TaqII	GACCGA	1 cut(s)	557
TasI	AATT	6 cut(s)	193, 383, 407, 468, 643, 1046
TfiI	GAWTC	5 cut(s)	42, 52, 364, 794, 829
Tru1I	TTAA	3 cut(s)	713, 942, 1069
Tru9I	TTAA	3 cut(s)	713, 942, 1069
TscAI	CASTG	2 cut(s)	361, 781
TseFI	GTSAC	1 cut(s)	772
TseI	GCWGC	1 cut(s)	748
Tsp45I	GTSAC	1 cut(s)	772
TspDTI	ATGAA	5 cut(s)	192, 422, 650, 709, 851
TspGWI	ACGGA	2 cut(s)	176, 1009
TspRI	CASTG	2 cut(s)	361, 781
Vha464I	CTTAAG	1 cut(s)	941
VpaK11BI	GGWCC	1 cut(s)	131
XbaI	TCTAGA	1 cut(s)	592
XhoI	CTCGAG	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	856
XmnI	GAANNNNTTC	2 cut(s)	66, 621
XspI	CTAG	6 cut(s)	29, 110, 536, 572, 593, 674
Zsp2I	ATGCAT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.