Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0012370

Physical Location & Seq

Genomic Coordinates Reverse (-)

4128454 .. 4130367

Gene Structure 1914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0057200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGGTGGGCCATCGCACTCCACGGCGGCGCCGGTGACATCCCGCTCTCTCTTCAGCCGGAGCGCCGCCAGCCTCGCGAGGCCGCCCTCCGCCACTGCCTCCAGATCGGCGTCGAAGCTCTCAAGGCCAACAAGCCTCCTCTCGACGTCGTCGAGCTTGTGGTTCGTGAGCTGGAGAATATTCCGGTGTTCAACGCCGGAAAGGGGTCTGTGTTGACCAGCAGCGGCACGGTGGAGATGGAAGCTTGTATTATGGACGGCACTAAGAGATGTGGAGCTGTTTCTGGCCTCACTACTGTAGTCAATCCCATATCTTTGGCCAGATTGGTCATGGAGAACACTCCTCATATCTATCTTGCTTTTGATGGAGCTGAGGCCTTTGCTAGGGAACAAGGCGTTGAGTGTGTAGATGCGAATAGCTTCATTACCCCGGAGAATGTTGAGAGGCTAAAACAGGCAAAAGAGGCCAACAGAGTGCAGATTGATTATACACAACCGATTAAGAAAGATGTGAAGGAAAAAGAAACACCAGAAGCTGATGGTGATAGCCAGCTTGGAACTGTTGGATGTGTGGCTGTTGATGATCTTGGGAATTTAGCTTCTGCAACTTCAACAGGCGGATTAGTCAACAAGATGGTTGGCCGGATTGGGGACACACCTATTATCGGTGCAGGGACGTATGCCAACAATCTCTGTGCAGTTTCTGCCACTGGCAAAGGTGAAGCAATAATCCGGAGTACAGCTGCGAGGGATGTGGCAGCTCTTATGGAGTACAAAGGTGTTTCTCTCAAAGAGGCTGCAGCTTATGTTGTGGAGGAGAGCACTCCAAAAGGCAATGTAGGCTTGGTTGCTGTATCTGCCAAAGGAGAAGTCACAATGCCTTTCAATACAACAGGGATGTTTCGAGCTTGCGCTACTGAGGATGGGTATTGGGAGATTGGAATATGGCCTTCTGATGTGCAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009698 GO:0009699 GO:0009718 GO:0009719 GO:0009725 GO:0009753 GO:0009812 GO:0009813 GO:0009987 GO:0010023 GO:0010033 GO:0016043 GO:0016491 GO:0016705 GO:0016706 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0042440 GO:0044237 GO:0044249 GO:0044550 GO:0046148 GO:0046189 GO:0046283 GO:0046483 GO:0050589 GO:0050896 GO:0051213 GO:0055114 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

322

Amino Acids

34.02

Weight (kDa)

5.0

Isoelectric Point (pI)

30.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asparaginase_2	PF01112	1 - 314	1.6e-114	Asparaginase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22880 AT4G22880 AT4G22880
fragaria_vesca	FvH4_5g01170
malus_domestica	MD03G1001100.v1.1 MD06G1071600.v1.1
prunus_persica	Prupe.5G086700_v2.0.a1
pyrus_communis	pycom06g06810
rosa_chinensis	RchiOBHm_Chr7g0199941
rosa_laevigata	RLG00000003758
rosa_multiflora	Rmu_sc0002748.1_g000005 Rmu_sc0008253.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256360
rosa_rugosa	Rorug07G0057200
rosa_samantha	Rh7AG182600 Rh7BG185400 Rh7CG192100 Rh7DG185500
rosa_wichuraiana	Rw7G016010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	29
AccBSI	CCGCTC	1 cut(s)	46
AccII	CGCG	1 cut(s)	78
AccIII	TCCGGA	1 cut(s)	732
AciI	CCGC	7 cut(s)	27, 44, 67, 84, 91, 225, 618
AcoI	YGGCCR	2 cut(s)	318, 640
AcsI	RAATTY	1 cut(s)	592
AcuI	CTGAAG	1 cut(s)	38
AcyI	GRCGYC	3 cut(s)	30, 111, 147
AfaI	GTAC	2 cut(s)	739, 773
AfiI	CCNNNNNNNGG	4 cut(s)	204, 384, 649, 665
AgsI	TTSAA	3 cut(s)	193, 612, 886
Alw21I	GWGCWC	1 cut(s)	824
AlwNI	CAGNNNCTG	2 cut(s)	536, 704
Aor13HI	TCCGGA	1 cut(s)	732
AoxI	GGCC	9 cut(s)	9, 81, 126, 286, 318, 375, 465, 640, 947
ApeKI	GCWGC	5 cut(s)	222, 743, 758, 797, 800
ApoI	RAATTY	1 cut(s)	592
ArsI	GACNNNNNNTTYG	2 cut(s)	855, 887
Asp700I	GAANNNNTTC	1 cut(s)	419
AspLEI	GCGC	3 cut(s)	32, 66, 914
AspS9I	GGNCC	1 cut(s)	9
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	3 cut(s)	47, 554, 731
BalI	TGGCCA	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	824
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	5 cut(s)	234, 730, 770, 784, 812
BccI	CCATC	6 cut(s)	20, 232, 359, 533, 628, 917
BceAI	ACGGC	2 cut(s)	40, 274
BcnI	CCSGG	1 cut(s)	431
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	2 cut(s)	297, 798
BfoI	RGCGCY	2 cut(s)	33, 67
BisI	GCNGC	9 cut(s)	28, 67, 84, 223, 226, 744, 759, 798, 801
BlsI	GCNGC	9 cut(s)	29, 68, 85, 224, 227, 745, 760, 799, 802
Bme1390I	CCNGG	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	431
BmsI	GCATC	1 cut(s)	400
BpmI	CTGGAG	2 cut(s)	86, 194
Bpu10I	CCTNAGC	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	431
BsaHI	GRCGYC	3 cut(s)	30, 111, 147
BsaJI	CCNNGG	2 cut(s)	22, 429
BsaWI	WCCGGW	2 cut(s)	184, 732
Bsc4I	CCNNNNNNNGG	4 cut(s)	204, 384, 649, 665
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	715
Bse3DI	GCAATG	1 cut(s)	841
BseAI	TCCGGA	1 cut(s)	732
BseDI	CCNNGG	2 cut(s)	22, 429
BseGI	GGATG	5 cut(s)	39, 572, 757, 903, 928
BseLI	CCNNNNNNNGG	4 cut(s)	204, 384, 649, 665
BseMI	GCAATG	1 cut(s)	841
BseMII	CTCAG	2 cut(s)	363, 909
BseNI	ACTGG	1 cut(s)	715
BseRI	GAGGAG	3 cut(s)	129, 333, 830
BseXI	GCAGC	5 cut(s)	234, 730, 770, 784, 812
BsgI	GTGCAG	3 cut(s)	497, 690, 717
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	9 cut(s)	11, 83, 128, 288, 320, 377, 467, 642, 949
BshNI	GGYRCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	824
BsiSI	CCGG	7 cut(s)	33, 59, 185, 198, 431, 643, 733
BslFI	GGGAC	2 cut(s)	665, 688
BslI	CCNNNNNNNGG	4 cut(s)	204, 384, 649, 665
BsmFI	GGGAC	2 cut(s)	665, 688
BsnI	GGCC	9 cut(s)	11, 83, 128, 288, 320, 377, 467, 642, 949
Bsp1286I	GDGCHC	1 cut(s)	824
Bsp13I	TCCGGA	1 cut(s)	732
Bsp143I	GATC	2 cut(s)	105, 583
Bsp68I	TCGCGA	1 cut(s)	78
BspACI	CCGC	7 cut(s)	27, 44, 67, 84, 91, 225, 618
BspANI	GGCC	9 cut(s)	11, 83, 128, 288, 320, 377, 467, 642, 949
BspCNI	CTCAG	2 cut(s)	364, 910
BspEI	TCCGGA	1 cut(s)	732
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	802
BspT107I	GGYRCC	1 cut(s)	29
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	841
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	715
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	22, 429
BssMI	GATC	2 cut(s)	105, 583
BssNI	GRCGYC	3 cut(s)	30, 111, 147
Bst4CI	ACNGT	3 cut(s)	232, 298, 562
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	3 cut(s)	30, 111, 147
BstAPI	GCANNNNNTGC	1 cut(s)	704
BstC8I	GCNNGC	3 cut(s)	71, 551, 910
BstDEI	CTNAG	3 cut(s)	264, 372, 918
BstDSI	CCRYGG	1 cut(s)	22
BstENI	CCTNNNNNAGG	1 cut(s)	382
BstF5I	GGATG	5 cut(s)	39, 572, 757, 903, 928
BstFNI	CGCG	1 cut(s)	78
BstH2I	RGCGCY	2 cut(s)	33, 67
BstHHI	GCGC	3 cut(s)	32, 66, 914
BstKTI	GATC	2 cut(s)	108, 586
BstMBI	GATC	2 cut(s)	105, 583
BstMWI	GCNNNNNNNGC	7 cut(s)	70, 75, 125, 464, 704, 840, 857
BstSCI	CCNGG	1 cut(s)	429
BstSFI	CTRYAG	2 cut(s)	297, 798
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	5 cut(s)	234, 730, 770, 784, 812
BstXI	CCANNNNNNTGG	1 cut(s)	316
BsuRI	GGCC	9 cut(s)	11, 83, 128, 288, 320, 377, 467, 642, 949
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	5 cut(s)	39, 572, 757, 903, 928
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	2 cut(s)	94, 708
BtuMI	TCGCGA	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	71, 551, 910
CaiI	CAGNNNCTG	2 cut(s)	536, 704
CfoI	GCGC	3 cut(s)	32, 66, 914
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	9
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	738, 772
CviAII	CATG	1 cut(s)	331
CviQI	GTAC	2 cut(s)	738, 772
DdeI	CTNAG	3 cut(s)	264, 372, 918
DinI	GGCGCC	1 cut(s)	31
DpnI	GATC	2 cut(s)	107, 585
DpnII	GATC	2 cut(s)	105, 583
EaeI	YGGCCR	2 cut(s)	318, 640
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
EciI	GGCGGA	2 cut(s)	80, 633
Eco147I	AGGCCT	1 cut(s)	377
Eco57I	CTGAAG	1 cut(s)	38
EcoNI	CCTNNNNNAGG	1 cut(s)	382
EgeI	GGCGCC	1 cut(s)	31
EheI	GGCGCC	1 cut(s)	31
FaeI	CATG	1 cut(s)	334
FaiI	YATR	9 cut(s)	254, 311, 332, 348, 489, 681, 767, 807, 946
FaqI	GGGAC	2 cut(s)	665, 688
FatI	CATG	1 cut(s)	330
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	9 cut(s)	28, 67, 84, 223, 226, 744, 759, 798, 801
FokI	GGATG	5 cut(s)	26, 579, 764, 910, 935
Fsp4HI	GCNGC	9 cut(s)	28, 67, 84, 223, 226, 744, 759, 798, 801
FspBI	CTAG	1 cut(s)	384
GlaI	GCGC	3 cut(s)	31, 65, 913
GluI	GCNGC	9 cut(s)	28, 67, 84, 223, 226, 744, 759, 798, 801
GsuI	CTGGAG	2 cut(s)	86, 194
HaeII	RGCGCY	2 cut(s)	33, 67
HaeIII	GGCC	9 cut(s)	11, 83, 128, 288, 320, 377, 467, 642, 949
HapII	CCGG	7 cut(s)	33, 59, 185, 198, 431, 643, 733
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	3 cut(s)	32, 66, 914
Hin1I	GRCGYC	3 cut(s)	30, 111, 147
Hin1II	CATG	1 cut(s)	334
Hin6I	GCGC	3 cut(s)	30, 64, 912
HinP1I	GCGC	3 cut(s)	30, 64, 912
HincII	GTYRAC	2 cut(s)	216, 628
HindII	GTYRAC	2 cut(s)	216, 628
HindIII	AAGCTT	1 cut(s)	243
HpaII	CCGG	7 cut(s)	33, 59, 185, 198, 431, 643, 733
HphI	GGTGA	3 cut(s)	47, 554, 731
Hpy166II	GTNNAC	2 cut(s)	216, 628
Hpy188I	TCNGA	1 cut(s)	955
Hpy188III	TCNNGA	5 cut(s)	77, 103, 143, 167, 733
Hpy8I	GTNNAC	2 cut(s)	216, 628
Hpy99I	CGWCG	4 cut(s)	116, 149, 152, 155
HpyAV	CCTTC	2 cut(s)	508, 960
HpyCH4III	ACNGT	3 cut(s)	232, 298, 562
HpyCH4IV	ACGT	2 cut(s)	147, 677
HpyCH4V	TGCA	6 cut(s)	478, 605, 671, 698, 800, 961
HpyF10VI	GCNNNNNNNGC	7 cut(s)	70, 75, 125, 464, 704, 840, 857
HpyF3I	CTNAG	3 cut(s)	264, 372, 918
HpySE526I	ACGT	2 cut(s)	147, 677
Hsp92I	GRCGYC	3 cut(s)	30, 111, 147
Hsp92II	CATG	1 cut(s)	334
HspAI	GCGC	3 cut(s)	30, 64, 912
KasI	GGCGCC	1 cut(s)	29
Kpn2I	TCCGGA	1 cut(s)	732
Kzo9I	GATC	2 cut(s)	105, 583
LmnI	GCTCC	3 cut(s)	61, 275, 368
Lsp1109I	GCAGC	5 cut(s)	234, 730, 770, 784, 812
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	1 cut(s)	384
MaeII	ACGT	2 cut(s)	147, 677
MaeIII	GTNAC	2 cut(s)	35, 871
MalI	GATC	2 cut(s)	107, 585
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	2 cut(s)	105, 583
MboII	GAAGA	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	824
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	1 cut(s)	592
MluNI	TGGCCA	1 cut(s)	320
Mly113I	GGCGCC	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	544
Mox20I	TGGCCA	1 cut(s)	320
MroI	TCCGGA	1 cut(s)	732
MroXI	GAANNNNTTC	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	320
MseI	TTAA	1 cut(s)	501
Msp20I	TGGCCA	1 cut(s)	320
MspA1I	CMGCKG	2 cut(s)	225, 743
MspI	CCGG	7 cut(s)	33, 59, 185, 198, 431, 643, 733
MspR9I	CCNGG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	7 cut(s)	70, 75, 125, 464, 704, 840, 857
NarI	GGCGCC	1 cut(s)	30
NciI	CCSGG	1 cut(s)	431
NdeII	GATC	2 cut(s)	105, 583
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	2 cut(s)	35, 871
NruI	TCGCGA	1 cut(s)	78
PceI	AGGCCT	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PdmI	GAANNNNTTC	1 cut(s)	419
PflFI	GACNNNGTC	1 cut(s)	149
PkrI	GCNGC	9 cut(s)	29, 68, 85, 224, 227, 745, 760, 799, 802
PluTI	GGCGCC	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	802
PstNI	CAGNNNCTG	2 cut(s)	536, 704
PsyI	GACNNNGTC	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	743
RruI	TCGCGA	1 cut(s)	78
RsaI	GTAC	2 cut(s)	739, 773
RsaNI	GTAC	2 cut(s)	738, 772
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	9 cut(s)	28, 67, 84, 223, 226, 744, 759, 798, 801
Sau3AI	GATC	2 cut(s)	105, 583
Sau96I	GGNCC	1 cut(s)	9
ScrFI	CCNGG	1 cut(s)	431
SduI	GDGCHC	1 cut(s)	824
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	2 cut(s)	297, 798
SfoI	GGCGCC	1 cut(s)	31
SgrAI	CRCCGGYG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	592
SseBI	AGGCCT	1 cut(s)	377
SsiI	CCGC	7 cut(s)	27, 44, 67, 84, 91, 225, 618
SspDI	GGCGCC	1 cut(s)	29
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	1 cut(s)	384
StuI	AGGCCT	1 cut(s)	377
StyD4I	CCNGG	1 cut(s)	429
TaaI	ACNGT	3 cut(s)	232, 298, 562
TaiI	ACGT	2 cut(s)	150, 680
TaqI	TCGA	4 cut(s)	114, 144, 153, 904
TasI	AATT	1 cut(s)	592
TatI	WGTACW	2 cut(s)	737, 771
TauI	GCSGC	4 cut(s)	30, 69, 86, 228
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	2 cut(s)	101, 715
TseFI	GTSAC	2 cut(s)	35, 871
TseI	GCWGC	5 cut(s)	222, 743, 758, 797, 800
Tsp45I	GTSAC	2 cut(s)	35, 871
TspDTI	ATGAA	1 cut(s)	412
TspRI	CASTG	2 cut(s)	101, 715
Tth111I	GACNNNGTC	1 cut(s)	149
XagI	CCTNNNNNAGG	1 cut(s)	382
XapI	RAATTY	1 cut(s)	592
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	1 cut(s)	384
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.