AT4G24060

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012750
Physical Location & Seq
Forward (+)
12503672 .. 12505774
2103 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24060.1

Sequence Viewer

Length: 1029 bp
ATGGATACGGCTCAGTGGCCACAGGAGATTGTAGTGAAGCCCTTGGAAGAAATAGTAACAAACACATGCCCAAAGCCGCAACCGCAACCGCTTCAACCGCAGCAGCCACCGTCGGTGGGTGGAGAGAGGAAGGCAAGGCCAGAAAAGGATCAAGCTGTAAACTGTCCGAGATGTAACTCAACCAACACAAAGTTTTGTTACTACAACAATTATAGTTTGACGCAGCCAAGATACTTCTGCAAAGGTTGTAGAAGGTATTGGACCGAAGGCGGTTCGCTTAGGAACATTCCTGTTGGCGGTGGCTCAAGAAAGAACAAGAGATCTCACTCTTCTTCTTCTGATATTAGTAACAATCACTCGGATTCTACACAACCAGCTACAAAGAAGCATCTCTCTGATCATCACCACCACCTCATGAGCATGTCTCAACAAGGTTTGACCGGTCAAAACCCTAAATTCCTTGAGACGACCCAACAAGATCTCAATTTAGGTTTTTCACCACATGGGATGATTAGGACCAACTTCACTGACCTCATCCACAACATTGGCAACAACACCAACAAGAGCAACAACAATAACAATCCATTGATTGTTTCTTCATGTTCTGCCATGGCTACTTCTTCTCTGGATCTCATAAGAAACAATAGTAACAATGGGAATTCTTCAAATTCTTCCTTCATGGGATTTCCAGTTCATAATCAAGATCCAGCATCAGGAGGGTTTTCAATGCAAGATCATTACAAGCCTTGCAACACAAACACCACACTGCTAGGGTTTTCATTAGATCATCATCATAATAATGGATTTCATGGAGGGTTTCAAGGAGGAGAAGAAGGTGGAGAAGGTGGTGATGATGTGAATGGAAGGCACTTGTTTCCTTTTGAGGATTTGAAATTGCCAGTTTCTTCTTCATCAGCAACAATTAATGTCGACATTAATGAACATCAGAAGCGAGGAAGCGGTAGTGATGCAGCTGCTACGTCTGGTGGGTATTGGACTGGGATGTTGAGTGGAGGATCATGGTGCTAA

Protein Analysis

342

Amino Acids

37.35

Weight (kDa)

7.27

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 50 - 107 1.9e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012750)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24060
fragaria_vesca FvH4_5g11410
malus_domestica MD06G1114000.v1.1 MD14G1135300.v1.1
prunus_persica Prupe.5G126800_v2.0.a1
pyrus_communis pycom06g10660 pycom14g10850
rosa_chinensis RchiOBHm_Chr7g0186471
rosa_laevigata RLG00000004843
rosa_multiflora Rmu_sc0000645.1_g000033
rosa_roxburghii Rroxscaffold_3G00268120
rosa_rugosa Rorug06G0474500
rosa_samantha Rh7AG066800 Rh7BG082600 Rh7CG081100 Rh7DG081800
rosa_wichuraiana Rw7G006800 Rw7G007040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 930
AciI CCGC 7 cut(s) 77, 83, 89, 98, 270, 297, 960
AclWI GGATC 4 cut(s) 156, 636, 698, 1024
AcoI YGGCCR 1 cut(s) 17
AcsI RAATTY 3 cut(s) 455, 658, 667
AfiI CCNNNNNNNGG 3 cut(s) 116, 296, 713
AgeI ACCGGT 1 cut(s) 440
AgsI TTSAA 5 cut(s) 95, 666, 726, 821, 892
AloI GAACNNNNNNTCC 2 cut(s) 675, 707
AluBI AGCT 3 cut(s) 155, 377, 974
AluI AGCT 3 cut(s) 155, 377, 974
Alw26I GTCTC 2 cut(s) 429, 458
AlwI GGATC 4 cut(s) 156, 636, 698, 1024
AoxI GGCC 2 cut(s) 17, 137
ApeKI GCWGC 5 cut(s) 100, 103, 223, 971, 974
ApoI RAATTY 3 cut(s) 455, 658, 667
AseI ATTAAT 2 cut(s) 924, 936
AsiGI ACCGGT 1 cut(s) 440
AspS9I GGNCC 2 cut(s) 261, 516
AsuHPI GGTGA 3 cut(s) 395, 489, 860
AvaII GGWCC 2 cut(s) 261, 516
BalI TGGCCA 1 cut(s) 19
BbvI GCAGC 5 cut(s) 112, 115, 235, 961, 983
BceAI ACGGC 1 cut(s) 24
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 2 cut(s) 429, 458
BfaI CTAG 1 cut(s) 770
BglII AGATCT 2 cut(s) 320, 478
BisI GCNGC 6 cut(s) 77, 101, 104, 224, 972, 975
BlsI GCNGC 6 cut(s) 78, 102, 105, 225, 973, 976
Bme18I GGWCC 2 cut(s) 261, 516
BmgT120I GGNCC 2 cut(s) 261, 516
BmrI ACTGGG 1 cut(s) 1008
BmsI GCATC 3 cut(s) 397, 719, 958
BmuI ACTGGG 1 cut(s) 1008
BplI GAGNNNNNCTC 2 cut(s) 409, 441
Bpu10I CCTNAGC 1 cut(s) 278
BpuEI CTTGAG 2 cut(s) 289, 482
BsaBI GATNNNNATC 1 cut(s) 789
BsaJI CCNNGG 2 cut(s) 42, 609
BsaWI WCCGGW 1 cut(s) 440
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 296, 713
Bse118I RCCGGY 1 cut(s) 440
Bse1I ACTGG 3 cut(s) 689, 899, 1003
Bse8I GATNNNNATC 1 cut(s) 789
BseDI CCNNGG 2 cut(s) 42, 609
BseGI GGATG 3 cut(s) 513, 534, 1008
BseJI GATNNNNATC 1 cut(s) 789
BseLI CCNNNNNNNGG 3 cut(s) 116, 296, 713
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 3 cut(s) 689, 899, 1003
BseRI GAGGAG 1 cut(s) 840
BseXI GCAGC 5 cut(s) 112, 115, 235, 961, 983
BshFI GGCC 2 cut(s) 19, 139
BshTI ACCGGT 1 cut(s) 440
BsiSI CCGG 1 cut(s) 441
BslI CCNNNNNNNGG 3 cut(s) 116, 296, 713
BsmAI GTCTC 2 cut(s) 429, 458
BsmBI CGTCTC 1 cut(s) 458
BsnI GGCC 2 cut(s) 19, 139
Bsp143I GATC 9 cut(s) 148, 320, 397, 478, 628, 703, 733, 784, 1016
Bsp19I CCATGG 1 cut(s) 609
BspACI CCGC 7 cut(s) 77, 83, 89, 98, 270, 297, 960
BspANI GGCC 2 cut(s) 19, 139
BspCNI CTCAG 1 cut(s) 25
BspHI TCATGA 1 cut(s) 414
BspPI GGATC 4 cut(s) 156, 636, 698, 1024
BsrFI RCCGGY 1 cut(s) 440
BsrI ACTGG 3 cut(s) 689, 899, 1003
BssAI RCCGGY 1 cut(s) 440
BssECI CCNNGG 2 cut(s) 42, 609
BssMI GATC 9 cut(s) 148, 320, 397, 478, 628, 703, 733, 784, 1016
BssT1I CCWWGG 2 cut(s) 42, 609
Bst4CI ACNGT 2 cut(s) 111, 164
Bst6I CTCTTC 1 cut(s) 334
BstDEI CTNAG 2 cut(s) 12, 278
BstDSI CCRYGG 1 cut(s) 609
BstF5I GGATG 3 cut(s) 513, 534, 1008
BstKTI GATC 9 cut(s) 151, 323, 400, 481, 631, 706, 736, 787, 1019
BstMAI GTCTC 2 cut(s) 429, 458
BstMBI GATC 9 cut(s) 148, 320, 397, 478, 628, 703, 733, 784, 1016
BstMWI GCNNNNNNNGC 2 cut(s) 82, 97
BstNSI RCATGY 2 cut(s) 69, 424
BstV1I GCAGC 5 cut(s) 112, 115, 235, 961, 983
BstX2I RGATCY 4 cut(s) 320, 478, 628, 703
BstXI CCANNNNNNTGG 1 cut(s) 545
BstYI RGATCY 4 cut(s) 320, 478, 628, 703
BsuRI GGCC 2 cut(s) 19, 139
BtgI CCRYGG 1 cut(s) 609
BtsCI GGATG 3 cut(s) 513, 534, 1008
BtsI GCAGTG 1 cut(s) 764
BtsIMutI CAGTG 3 cut(s) 20, 525, 764
CciI TCATGA 1 cut(s) 414
Cfr10I RCCGGY 1 cut(s) 440
Cfr13I GGNCC 2 cut(s) 261, 516
CseI GACGC 1 cut(s) 229
CspAI ACCGGT 1 cut(s) 440
CviAII CATG 9 cut(s) 66, 415, 421, 503, 600, 610, 679, 809, 1020
DdeI CTNAG 2 cut(s) 12, 278
DpnI GATC 9 cut(s) 150, 322, 399, 480, 630, 705, 735, 786, 1018
DpnII GATC 9 cut(s) 148, 320, 397, 478, 628, 703, 733, 784, 1016
EaeI YGGCCR 1 cut(s) 17
Eam1104I CTCTTC 1 cut(s) 334
EarI CTCTTC 1 cut(s) 334
Eco130I CCWWGG 2 cut(s) 42, 609
Eco47I GGWCC 2 cut(s) 261, 516
EcoRI GAATTC 1 cut(s) 658
EcoT14I CCWWGG 2 cut(s) 42, 609
ErhI CCWWGG 2 cut(s) 42, 609
Esp3I CGTCTC 1 cut(s) 458
FaeI CATG 9 cut(s) 69, 418, 424, 506, 603, 613, 682, 812, 1023
FatI CATG 9 cut(s) 65, 414, 420, 502, 599, 609, 678, 808, 1019
FbaI TGATCA 1 cut(s) 397
FblI GTMKAC 1 cut(s) 930
Fnu4HI GCNGC 6 cut(s) 77, 101, 104, 224, 972, 975
FokI GGATG 3 cut(s) 520, 521, 1015
Fsp4HI GCNGC 6 cut(s) 77, 101, 104, 224, 972, 975
FspBI CTAG 1 cut(s) 770
GluI GCNGC 6 cut(s) 77, 101, 104, 224, 972, 975
HaeIII GGCC 2 cut(s) 19, 139
HapII CCGG 1 cut(s) 441
HgaI GACGC 1 cut(s) 229
Hin1II CATG 9 cut(s) 69, 418, 424, 506, 603, 613, 682, 812, 1023
HincII GTYRAC 1 cut(s) 931
HindII GTYRAC 1 cut(s) 931
HinfI GANTC 1 cut(s) 362
HpaII CCGG 1 cut(s) 441
HphI GGTGA 3 cut(s) 395, 489, 860
Hpy166II GTNNAC 2 cut(s) 160, 931
Hpy188I TCNGA 5 cut(s) 168, 340, 361, 397, 948
Hpy188III TCNNGA 5 cut(s) 306, 415, 626, 701, 714
Hpy8I GTNNAC 2 cut(s) 160, 931
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 7 cut(s) 124, 246, 260, 685, 827, 836, 858
HpyCH4III ACNGT 2 cut(s) 111, 164
HpyCH4IV ACGT 1 cut(s) 980
HpyCH4V TGCA 4 cut(s) 240, 730, 750, 971
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 97
HpyF3I CTNAG 2 cut(s) 12, 278
HpySE526I ACGT 1 cut(s) 980
Hsp92II CATG 9 cut(s) 69, 418, 424, 506, 603, 613, 682, 812, 1023
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 9 cut(s) 148, 320, 397, 478, 628, 703, 733, 784, 1016
Lsp1109I GCAGC 5 cut(s) 112, 115, 235, 961, 983
LweI GCATC 3 cut(s) 397, 719, 958
MaeI CTAG 1 cut(s) 770
MaeII ACGT 1 cut(s) 980
MaeIII GTNAC 5 cut(s) 55, 173, 197, 347, 647
MalI GATC 9 cut(s) 150, 322, 399, 480, 630, 705, 735, 786, 1018
MboI GATC 9 cut(s) 148, 320, 397, 478, 628, 703, 733, 784, 1016
MflI RGATCY 4 cut(s) 320, 478, 628, 703
MlsI TGGCCA 1 cut(s) 19
MluCI AATT 7 cut(s) 208, 455, 484, 658, 667, 893, 921
MluNI TGGCCA 1 cut(s) 19
MnlI CCTC 9 cut(s) 120, 422, 542, 710, 806, 818, 877, 947, 1007
Mox20I TGGCCA 1 cut(s) 19
MscI TGGCCA 1 cut(s) 19
MseI TTAA 2 cut(s) 924, 936
MslI CAYNNNNRTG 2 cut(s) 419, 798
Msp20I TGGCCA 1 cut(s) 19
MspA1I CMGCKG 1 cut(s) 974
MspI CCGG 1 cut(s) 441
MwoI GCNNNNNNNGC 2 cut(s) 82, 97
NcoI CCATGG 1 cut(s) 609
NdeII GATC 9 cut(s) 148, 320, 397, 478, 628, 703, 733, 784, 1016
NlaIII CATG 9 cut(s) 69, 418, 424, 506, 603, 613, 682, 812, 1023
NspI RCATGY 2 cut(s) 69, 424
PagI TCATGA 1 cut(s) 414
PfeI GAWTC 1 cut(s) 362
PinAI ACCGGT 1 cut(s) 440
PkrI GCNGC 6 cut(s) 78, 102, 105, 225, 973, 976
PshBI ATTAAT 2 cut(s) 924, 936
PspPI GGNCC 2 cut(s) 261, 516
PsuI RGATCY 4 cut(s) 320, 478, 628, 703
PvuII CAGCTG 1 cut(s) 974
RseI CAYNNNNRTG 2 cut(s) 419, 798
SalI GTCGAC 1 cut(s) 929
SaqAI TTAA 2 cut(s) 924, 936
SatI GCNGC 6 cut(s) 77, 101, 104, 224, 972, 975
Sau3AI GATC 9 cut(s) 148, 320, 397, 478, 628, 703, 733, 784, 1016
Sau96I GGNCC 2 cut(s) 261, 516
SfaNI GCATC 3 cut(s) 397, 719, 958
SinI GGWCC 2 cut(s) 261, 516
SmiMI CAYNNNNRTG 2 cut(s) 419, 798
SmlI CTYRAG 2 cut(s) 304, 461
SmoI CTYRAG 2 cut(s) 304, 461
Sse9I AATT 7 cut(s) 208, 455, 484, 658, 667, 893, 921
SsiI CCGC 7 cut(s) 77, 83, 89, 98, 270, 297, 960
SspMI CTAG 1 cut(s) 770
StyI CCWWGG 2 cut(s) 42, 609
TaaI ACNGT 2 cut(s) 111, 164
TaiI ACGT 1 cut(s) 983
TaqI TCGA 1 cut(s) 930
TaqII GACCGA 1 cut(s) 278
TasI AATT 7 cut(s) 208, 455, 484, 658, 667, 893, 921
TauI GCSGC 1 cut(s) 79
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 2 cut(s) 924, 936
Tru9I TTAA 2 cut(s) 924, 936
TscAI CASTG 3 cut(s) 20, 532, 771
TseI GCWGC 5 cut(s) 100, 103, 223, 971, 974
TspDTI ATGAA 7 cut(s) 588, 667, 683, 768, 797, 900, 954
TspRI CASTG 3 cut(s) 20, 532, 771
VpaK11BI GGWCC 2 cut(s) 261, 516
VspI ATTAAT 2 cut(s) 924, 936
XapI RAATTY 3 cut(s) 455, 658, 667
XceI RCATGY 2 cut(s) 69, 424
XmiI GTMKAC 1 cut(s) 930
XspI CTAG 1 cut(s) 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.