FvH4_5g11410

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012750
Physical Location & Seq
Reverse (-)
6466561 .. 6469091
2531 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11410.t1

Sequence Viewer

Length: 912 bp
ATGGACACTGCTCAATGGCCACAGGGAATTGTGGTGAAACCAATAGAAGAGATAGTGACAAACACTTGCCCTAAGCCTTCTTCTGCTAATAATCTAGAGAGGAAGCTTGCAAGGCCTCAGAAAGAATCTGCCCTAAACTGTCCAAGGTGCAACTCCACCAATACCAAGTTCTGTTACTACAACAACTACAGCCTCACACAACCCAGATACTTCTGCAAGACCTGTAGAAGGTACTGGACTGATGGGGGGTCTCTCAGGAACATCCCAGTTGGAGGAGGCTCAAGGAAGAACAAGAGATCATCGTCTTCTTCCTCATCAACACCAACTTCTAATATTTCCAACAACGCATCAAAGAGGCTTCCTGATCTGATACAACCCCAAGGCAACCAAGGTAATAACCAAGGTCAAGATCTCAACCTGGGCTTTCCATCCAATCAAGTTTTTGCACATCATCAAATCCCCAAAATTGATCAAAACAGTGACAAGAACAACAACTCTTCCAGCACTAGCACTACTACAACAGCATCTCACCTCTCAGCTTTGGAGCTTCTCACTGGTTTGACCTCCAGGGGTTTGAACTCCTTCATGCCCATGCCAGTACCTAATTCAGATCCCAACAGCAACAACAACAGTGGAAGTGTATATACATCTGGCTTCCCCATGAGTGAGTTAATGATCAAGCCAACCCTTAATTTCTCTCTTGATGGGCTTGGAAGTGGGTATGGGAGTGCTCTTCAAGGTCATCATGTTCAAGAAAACAGTGGGAGGCTGTTGTTTCCATTTGAGGATTTAAAACAAGTGTCAGGCAGTGGTGGTGGAATTGATCATCATCAGCAGAACAACAAGGAGCATCATCATGGTGGAGACTCAACTGGGTATTGGACTGGAATGTTAGGAGGAGGATCATGGTAA

Protein Analysis

304

Amino Acids

32.88

Weight (kDa)

9.0

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 43 - 99 1.7e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012750)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24060
fragaria_vesca FvH4_5g11410
malus_domestica MD06G1114000.v1.1 MD14G1135300.v1.1
prunus_persica Prupe.5G126800_v2.0.a1
pyrus_communis pycom06g10660 pycom14g10850
rosa_chinensis RchiOBHm_Chr7g0186471
rosa_laevigata RLG00000004843
rosa_multiflora Rmu_sc0000645.1_g000033
rosa_roxburghii Rroxscaffold_3G00268120
rosa_rugosa Rorug06G0474500
rosa_samantha Rh7AG066800 Rh7BG082600 Rh7CG081100 Rh7DG081800
rosa_wichuraiana Rw7G006800 Rw7G007040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 605, 910
AcoI YGGCCR 1 cut(s) 17
AfaI GTAC 2 cut(s) 233, 600
AfiI CCNNNNNNNGG 2 cut(s) 228, 272
AgsI TTSAA 3 cut(s) 577, 737, 752
AjnI CCWGG 2 cut(s) 417, 566
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 3 cut(s) 106, 539, 547
AluI AGCT 3 cut(s) 106, 539, 547
Alw21I GWGCWC 1 cut(s) 733
Alw26I GTCTC 2 cut(s) 255, 858
AlwI GGATC 2 cut(s) 605, 910
AoxI GGCC 2 cut(s) 17, 113
Asp700I GAANNNNTTC 1 cut(s) 581
AsuHPI GGTGA 2 cut(s) 46, 521
BalI TGGCCA 1 cut(s) 19
BarI GAAGNNNNNNTAC 2 cut(s) 628, 660
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 733
BccI CCATC 3 cut(s) 236, 436, 698
BciT130I CCWGG 2 cut(s) 419, 568
BclI TGATCA 3 cut(s) 469, 675, 823
BcoDI GTCTC 2 cut(s) 255, 858
BfaI CTAG 2 cut(s) 95, 507
BfmI CTRYAG 2 cut(s) 187, 223
BglII AGATCT 1 cut(s) 409
Bme1390I CCNGG 2 cut(s) 419, 568
BmrFI CCNGG 2 cut(s) 419, 568
BmrI ACTGGG 2 cut(s) 260, 882
BmsI GCATC 3 cut(s) 356, 533, 859
BmuI ACTGGG 2 cut(s) 260, 882
BpiI GAAGAC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 550
Bpu10I CCTNAGC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 265
BsaBI GATNNNNATC 1 cut(s) 828
BsaI GGTCTC 1 cut(s) 255
BsaJI CCNNGG 6 cut(s) 143, 379, 388, 400, 418, 567
Bsc4I CCNNNNNNNGG 2 cut(s) 228, 272
Bse1I ACTGG 6 cut(s) 239, 266, 559, 596, 877, 889
Bse8I GATNNNNATC 1 cut(s) 828
BseBI CCWGG 2 cut(s) 419, 568
BseDI CCNNGG 6 cut(s) 143, 379, 388, 400, 418, 567
BseGI GGATG 2 cut(s) 261, 428
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 2 cut(s) 228, 272
BseMII CTCAG 3 cut(s) 131, 268, 549
BseNI ACTGG 6 cut(s) 239, 266, 559, 596, 877, 889
BseRI GAGGAG 2 cut(s) 288, 912
BshFI GGCC 2 cut(s) 19, 115
BsiHKAI GWGCWC 1 cut(s) 733
BslI CCNNNNNNNGG 2 cut(s) 228, 272
BsmAI GTCTC 2 cut(s) 255, 858
BsnI GGCC 2 cut(s) 19, 115
Bso31I GGTCTC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 733
Bsp143I GATC 8 cut(s) 296, 364, 409, 469, 610, 675, 823, 902
BspANI GGCC 2 cut(s) 19, 115
BspCNI CTCAG 3 cut(s) 130, 267, 548
BspPI GGATC 2 cut(s) 605, 910
BspQI GCTCTTC 1 cut(s) 738
BspTNI GGTCTC 1 cut(s) 255
BsrI ACTGG 6 cut(s) 239, 266, 559, 596, 877, 889
BssECI CCNNGG 6 cut(s) 143, 379, 388, 400, 418, 567
BssMI GATC 8 cut(s) 296, 364, 409, 469, 610, 675, 823, 902
BssT1I CCWWGG 4 cut(s) 143, 379, 388, 400
Bst2UI CCWGG 2 cut(s) 419, 568
Bst4CI ACNGT 4 cut(s) 140, 479, 632, 761
Bst6I CTCTTC 3 cut(s) 42, 502, 738
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 4 cut(s) 72, 117, 254, 535
BstENI CCTNNNNNAGG 1 cut(s) 226
BstF5I GGATG 2 cut(s) 261, 428
BstKTI GATC 8 cut(s) 299, 367, 412, 472, 613, 678, 826, 905
BstMAI GTCTC 2 cut(s) 255, 858
BstMBI GATC 8 cut(s) 296, 364, 409, 469, 610, 675, 823, 902
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 2 cut(s) 419, 568
BstSCI CCNGG 2 cut(s) 417, 566
BstSFI CTRYAG 2 cut(s) 187, 223
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 2 cut(s) 409, 610
BstYI RGATCY 2 cut(s) 409, 610
BsuRI GGCC 2 cut(s) 19, 115
BtsCI GGATG 2 cut(s) 261, 428
BtsI GCAGTG 2 cut(s) 6, 814
BtsIMutI CAGTG 6 cut(s) 6, 484, 552, 637, 766, 814
Cac8I GCNNGC 1 cut(s) 108
Csp6I GTAC 2 cut(s) 232, 599
CspCI CAANNNNNGTGG 2 cut(s) 613, 648
CviAII CATG 6 cut(s) 586, 592, 661, 746, 857, 906
CviQI GTAC 2 cut(s) 232, 599
DdeI CTNAG 4 cut(s) 72, 117, 254, 535
DpnI GATC 8 cut(s) 298, 366, 411, 471, 612, 677, 825, 904
DpnII GATC 8 cut(s) 296, 364, 409, 469, 610, 675, 823, 902
DraI TTTAAA 1 cut(s) 792
EaeI YGGCCR 1 cut(s) 17
Eam1104I CTCTTC 3 cut(s) 42, 502, 738
EarI CTCTTC 3 cut(s) 42, 502, 738
Eco130I CCWWGG 4 cut(s) 143, 379, 388, 400
Eco147I AGGCCT 1 cut(s) 115
Eco31I GGTCTC 1 cut(s) 255
EcoNI CCTNNNNNAGG 1 cut(s) 226
EcoRII CCWGG 2 cut(s) 417, 566
EcoT14I CCWWGG 4 cut(s) 143, 379, 388, 400
ErhI CCWWGG 4 cut(s) 143, 379, 388, 400
FaeI CATG 6 cut(s) 589, 595, 664, 749, 860, 909
FaiI YATR 9 cut(s) 587, 593, 643, 645, 662, 723, 747, 858, 907
FatI CATG 6 cut(s) 585, 591, 660, 745, 856, 905
FbaI TGATCA 3 cut(s) 469, 675, 823
FokI GGATG 2 cut(s) 248, 415
FspBI CTAG 2 cut(s) 95, 507
GsuI CTGGAG 1 cut(s) 550
HaeIII GGCC 2 cut(s) 19, 115
Hin1II CATG 6 cut(s) 589, 595, 664, 749, 860, 909
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 2 cut(s) 125, 866
HphI GGTGA 2 cut(s) 46, 521
Hpy188I TCNGA 3 cut(s) 120, 369, 610
Hpy188III TCNNGA 6 cut(s) 95, 256, 362, 407, 701, 752
HpyAV CCTTC 3 cut(s) 87, 222, 592
HpyCH4III ACNGT 4 cut(s) 140, 479, 632, 761
HpyCH4V TGCA 4 cut(s) 110, 150, 216, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 4 cut(s) 72, 117, 254, 535
Hsp92II CATG 6 cut(s) 589, 595, 664, 749, 860, 909
Ksp22I TGATCA 3 cut(s) 469, 675, 823
Kzo9I GATC 8 cut(s) 296, 364, 409, 469, 610, 675, 823, 902
LguI GCTCTTC 1 cut(s) 738
LmnI GCTCC 2 cut(s) 544, 847
LweI GCATC 3 cut(s) 356, 533, 859
MaeI CTAG 2 cut(s) 95, 507
MaeIII GTNAC 3 cut(s) 55, 173, 479
MalI GATC 8 cut(s) 298, 366, 411, 471, 612, 677, 825, 904
MboI GATC 8 cut(s) 296, 364, 409, 469, 610, 675, 823, 902
MboII GAAGA 7 cut(s) 59, 72, 297, 298, 300, 489, 725
MflI RGATCY 2 cut(s) 409, 610
MhlI GDGCHC 1 cut(s) 733
MlsI TGGCCA 1 cut(s) 19
MluCI AATT 5 cut(s) 27, 465, 604, 691, 819
MluNI TGGCCA 1 cut(s) 19
MlyI GAGTC 1 cut(s) 860
MmeI TCCRAC 2 cut(s) 250, 363
Mox20I TGGCCA 1 cut(s) 19
MroXI GAANNNNTTC 1 cut(s) 581
MscI TGGCCA 1 cut(s) 19
MseI TTAA 3 cut(s) 671, 690, 791
MslI CAYNNNNRTG 3 cut(s) 590, 855, 858
Msp20I TGGCCA 1 cut(s) 19
MspR9I CCNGG 2 cut(s) 419, 568
MvaI CCWGG 2 cut(s) 419, 568
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 8 cut(s) 296, 364, 409, 469, 610, 675, 823, 902
NlaIII CATG 6 cut(s) 589, 595, 664, 749, 860, 909
NmuCI GTSAC 2 cut(s) 55, 479
PceI AGGCCT 1 cut(s) 115
PciSI GCTCTTC 1 cut(s) 738
PdmI GAANNNNTTC 1 cut(s) 581
PfeI GAWTC 1 cut(s) 125
PleI GAGTC 1 cut(s) 860
PpsI GAGTC 1 cut(s) 860
Psp6I CCWGG 2 cut(s) 417, 566
PspGI CCWGG 2 cut(s) 417, 566
PsuI RGATCY 2 cut(s) 409, 610
RsaI GTAC 2 cut(s) 233, 600
RsaNI GTAC 2 cut(s) 232, 599
RseI CAYNNNNRTG 3 cut(s) 590, 855, 858
SapI GCTCTTC 1 cut(s) 738
SaqAI TTAA 3 cut(s) 671, 690, 791
Sau3AI GATC 8 cut(s) 296, 364, 409, 469, 610, 675, 823, 902
SchI GAGTC 1 cut(s) 860
ScrFI CCNGG 2 cut(s) 419, 568
SduI GDGCHC 1 cut(s) 733
SfaNI GCATC 3 cut(s) 356, 533, 859
SfcI CTRYAG 2 cut(s) 187, 223
SmiMI CAYNNNNRTG 3 cut(s) 590, 855, 858
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 5 cut(s) 27, 465, 604, 691, 819
SseBI AGGCCT 1 cut(s) 115
SspI AATATT 1 cut(s) 334
SspMI CTAG 2 cut(s) 95, 507
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 2 cut(s) 417, 566
StyI CCWWGG 4 cut(s) 143, 379, 388, 400
TaaI ACNGT 4 cut(s) 140, 479, 632, 761
TasI AATT 5 cut(s) 27, 465, 604, 691, 819
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 3 cut(s) 671, 690, 791
Tru9I TTAA 3 cut(s) 671, 690, 791
TscAI CASTG 6 cut(s) 13, 484, 559, 637, 766, 814
TseFI GTSAC 2 cut(s) 55, 479
Tsp45I GTSAC 2 cut(s) 55, 479
TspDTI ATGAA 1 cut(s) 574
TspRI CASTG 6 cut(s) 13, 484, 559, 637, 766, 814
XagI CCTNNNNNAGG 1 cut(s) 226
XbaI TCTAGA 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 581
XspI CTAG 2 cut(s) 95, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.