Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012750

Physical Location & Seq

Genomic Coordinates Forward (+)

12404195 .. 12406427

Gene Structure 2233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G126800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGATACTGCTCAGTGGCCACAGGGAATTGTGGTGAAACCAATAGAAGAGATAGTGACAAATACATGCCCTAAGCCTGCAGCAGCAGCAGCAGTCAATAATTTAGAGAGGAAGGCAAGACCTCAGAAAGAACAAGCCCTAAACTGTCCAAGGTGCAACTCAACCAACACCAAATTCTGTTATTACAACAACTACAGCCTCACACAGCCCAGGTACTTCTGCAAGACTTGTAGAAGGTACTGGACTGAAGGTGGGTCCCTCAGAAACATCCCAGTTGGGGGGGGTTCAAGGAAGAACAAGAGATCATCATCTTCTTCAGCAGCCGCTAATTCTTCTACAACAACATCTTCTACTTCTTCAGCATCCAAGAGGCTTCCTGATCTGATACAACCCCAAAACCCAAAGATTAATCAAGGCCAAGATCTAAACCTGACTTTTCCAGCCACTAATCAAGATTTCAGGAATATTATCTCTGACCATTTGGTTCATCATCATCAACAACATCATCAATTGCCCAACAACAACAACATGGAAAACAGCAACAAGCAGAACCACATTAATATTTCTGCTTCTTCCCCATCTTCTACCACCACCACCACAACATCTCACCTCTCAGCTTTGGAGCTTCTCACTGGATTGACTTCAAGGGGTTTGAATTCCTTCATGCCTATGCCAGTTCCAGACCCCAACAACAACAACAACAACAACACTGTATATAGCACCACATCTGGGTTCCCTATGCAGGATTTCAAGCCAACACTTAATTTTTCCCTGGATGGGCTTGGAAGTGGATATGGGAGTCTGCAAGGTGTTCAAGAGAGCAGTGGGAGGCTTTTGTTCCCATTTGAAGATTTGAAGCAAGTTTCAAGCACTGGAGGAGGGATTGAGCAGAACAAGGAGCATGGAGACTCAACTGGGTATTGGACAGGAATGTTAGGAGGAGGATCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

318

Amino Acids

34.61

Weight (kDa)

9.0

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24060
fragaria_vesca	FvH4_5g11410
malus_domestica	MD06G1114000.v1.1 MD14G1135300.v1.1
prunus_persica	Prupe.5G126800_v2.0.a1
pyrus_communis	pycom06g10660 pycom14g10850
rosa_chinensis	RchiOBHm_Chr7g0186471
rosa_laevigata	RLG00000004843
rosa_multiflora	Rmu_sc0000645.1_g000033
rosa_roxburghii	Rroxscaffold_3G00268120
rosa_rugosa	Rorug06G0474500
rosa_samantha	Rh7AG066800 Rh7BG082600 Rh7CG081100 Rh7DG081800
rosa_wichuraiana	Rw7G006800 Rw7G007040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	1 cut(s)	952
AcoI	YGGCCR	1 cut(s)	17
AcsI	RAATTY	2 cut(s)	173, 655
AcuI	CTGAAG	3 cut(s)	267, 300, 342
AfaI	GTAC	2 cut(s)	215, 239
AfiI	CCNNNNNNNGG	5 cut(s)	277, 278, 729, 742, 777
AgsI	TTSAA	8 cut(s)	288, 645, 655, 751, 815, 848, 856, 867
AjnI	CCWGG	2 cut(s)	209, 771
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	2 cut(s)	617, 625
AluI	AGCT	2 cut(s)	617, 625
Alw26I	GTCTC	1 cut(s)	900
AlwI	GGATC	1 cut(s)	952
AoxI	GGCC	2 cut(s)	17, 415
ApeKI	GCWGC	5 cut(s)	80, 83, 86, 89, 320
ApoI	RAATTY	2 cut(s)	173, 655
AseI	ATTAAT	2 cut(s)	408, 558
Asp700I	GAANNNNTTC	1 cut(s)	659
AspS9I	GGNCC	1 cut(s)	255
AsuHPI	GGTGA	2 cut(s)	46, 599
AvaII	GGWCC	1 cut(s)	255
BalI	TGGCCA	1 cut(s)	19
BbvI	GCAGC	5 cut(s)	92, 95, 98, 101, 332
BccI	CCATC	2 cut(s)	586, 770
BciT130I	CCWGG	2 cut(s)	211, 773
BcoDI	GTCTC	1 cut(s)	900
BfmI	CTRYAG	2 cut(s)	78, 193
BglII	AGATCT	1 cut(s)	421
BisI	GCNGC	6 cut(s)	81, 84, 87, 90, 321, 324
BlsI	GCNGC	6 cut(s)	82, 85, 88, 91, 322, 325
Bme1390I	CCNGG	2 cut(s)	211, 773
Bme18I	GGWCC	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	3 cut(s)	256, 257, 734
BmrFI	CCNGG	2 cut(s)	211, 773
BmrI	ACTGGG	2 cut(s)	266, 924
BmsI	GCATC	1 cut(s)	371
BmuI	ACTGGG	2 cut(s)	266, 924
BpmI	CTGGAG	1 cut(s)	894
Bpu10I	CCTNAGC	1 cut(s)	72
BsaBI	GATNNNNATC	1 cut(s)	307
BsaJI	CCNNGG	3 cut(s)	149, 209, 771
Bsc4I	CCNNNNNNNGG	5 cut(s)	277, 278, 729, 742, 777
Bse1I	ACTGG	6 cut(s)	245, 272, 637, 674, 877, 919
Bse8I	GATNNNNATC	1 cut(s)	307
BseBI	CCWGG	2 cut(s)	211, 773
BseDI	CCNNGG	3 cut(s)	149, 209, 771
BseGI	GGATG	3 cut(s)	267, 362, 781
BseJI	GATNNNNATC	1 cut(s)	307
BseLI	CCNNNNNNNGG	5 cut(s)	277, 278, 729, 742, 777
BseMII	CTCAG	4 cut(s)	26, 137, 274, 627
BseNI	ACTGG	6 cut(s)	245, 272, 637, 674, 877, 919
BseRI	GAGGAG	2 cut(s)	891, 954
BseXI	GCAGC	5 cut(s)	92, 95, 98, 101, 332
BshFI	GGCC	2 cut(s)	19, 417
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	5 cut(s)	277, 278, 729, 742, 777
BsmAI	GTCTC	1 cut(s)	900
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	2 cut(s)	19, 417
Bsp143I	GATC	4 cut(s)	302, 379, 421, 944
BspACI	CCGC	1 cut(s)	324
BspANI	GGCC	2 cut(s)	19, 417
BspCNI	CTCAG	4 cut(s)	25, 136, 273, 626
BspLI	GGNNCC	3 cut(s)	256, 257, 734
BspMAI	CTGCAG	1 cut(s)	82
BspPI	GGATC	1 cut(s)	952
BsrI	ACTGG	6 cut(s)	245, 272, 637, 674, 877, 919
BssECI	CCNNGG	3 cut(s)	149, 209, 771
BssMI	GATC	4 cut(s)	302, 379, 421, 944
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	2 cut(s)	211, 773
Bst4CI	ACNGT	2 cut(s)	146, 712
Bst6I	CTCTTC	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	5 cut(s)	12, 72, 123, 260, 613
BstF5I	GGATG	3 cut(s)	267, 362, 781
BstKTI	GATC	4 cut(s)	305, 382, 424, 947
BstMAI	GTCTC	1 cut(s)	900
BstMBI	GATC	4 cut(s)	302, 379, 421, 944
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 89
BstNI	CCWGG	2 cut(s)	211, 773
BstNSI	RCATGY	1 cut(s)	69
BstSCI	CCNGG	2 cut(s)	209, 771
BstSFI	CTRYAG	2 cut(s)	78, 193
BstV1I	GCAGC	5 cut(s)	92, 95, 98, 101, 332
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuRI	GGCC	2 cut(s)	19, 417
BtsCI	GGATG	3 cut(s)	267, 362, 781
BtsI	GCAGTG	1 cut(s)	829
BtsIMutI	CAGTG	5 cut(s)	20, 630, 708, 829, 870
Cac8I	GCNNGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	214, 238
CviAII	CATG	5 cut(s)	66, 529, 664, 902, 948
CviQI	GTAC	2 cut(s)	214, 238
DdeI	CTNAG	5 cut(s)	12, 72, 123, 260, 613
DpnI	GATC	4 cut(s)	304, 381, 423, 946
DpnII	GATC	4 cut(s)	302, 379, 421, 944
EaeI	YGGCCR	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	255
Eco57I	CTGAAG	3 cut(s)	267, 300, 342
EcoO109I	RGGNCCY	1 cut(s)	255
EcoRI	GAATTC	1 cut(s)	655
EcoRII	CCWGG	2 cut(s)	209, 771
EcoT14I	CCWWGG	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	5 cut(s)	69, 532, 667, 905, 951
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	5 cut(s)	65, 528, 663, 901, 947
Fnu4HI	GCNGC	6 cut(s)	81, 84, 87, 90, 321, 324
FokI	GGATG	3 cut(s)	254, 349, 788
Fsp4HI	GCNGC	6 cut(s)	81, 84, 87, 90, 321, 324
GluI	GCNGC	6 cut(s)	81, 84, 87, 90, 321, 324
GsuI	CTGGAG	1 cut(s)	894
HaeIII	GGCC	2 cut(s)	19, 417
Hin1II	CATG	5 cut(s)	69, 532, 667, 905, 951
HinfI	GANTC	2 cut(s)	799, 908
HphI	GGTGA	2 cut(s)	46, 599
Hpy188I	TCNGA	4 cut(s)	126, 263, 384, 475
Hpy188III	TCNNGA	5 cut(s)	377, 452, 460, 680, 815
HpyAV	CCTTC	4 cut(s)	106, 228, 242, 670
HpyCH4III	ACNGT	2 cut(s)	146, 712
HpyCH4V	TGCA	5 cut(s)	80, 156, 222, 742, 805
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 89
HpyF3I	CTNAG	5 cut(s)	12, 72, 123, 260, 613
Hsp92II	CATG	5 cut(s)	69, 532, 667, 905, 951
KflI	GGGWCCC	1 cut(s)	255
Kzo9I	GATC	4 cut(s)	302, 379, 421, 944
LmnI	GCTCC	2 cut(s)	622, 898
Lsp1109I	GCAGC	5 cut(s)	92, 95, 98, 101, 332
LweI	GCATC	1 cut(s)	371
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	4 cut(s)	304, 381, 423, 946
MboI	GATC	4 cut(s)	302, 379, 421, 944
MfeI	CAATTG	1 cut(s)	509
MflI	RGATCY	1 cut(s)	421
MlsI	TGGCCA	1 cut(s)	19
MluCI	AATT	7 cut(s)	27, 100, 173, 328, 509, 655, 763
MluNI	TGGCCA	1 cut(s)	19
MlyI	GAGTC	2 cut(s)	808, 902
Mox20I	TGGCCA	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	659
MscI	TGGCCA	1 cut(s)	19
MseI	TTAA	3 cut(s)	408, 558, 762
MslI	CAYNNNNRTG	1 cut(s)	668
Msp20I	TGGCCA	1 cut(s)	19
MspR9I	CCNGG	2 cut(s)	211, 773
MunI	CAATTG	1 cut(s)	509
MvaI	CCWGG	2 cut(s)	211, 773
MwoI	GCNNNNNNNGC	2 cut(s)	86, 89
NdeII	GATC	4 cut(s)	302, 379, 421, 944
NlaIII	CATG	5 cut(s)	69, 532, 667, 905, 951
NlaIV	GGNNCC	3 cut(s)	256, 257, 734
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	659
PkrI	GCNGC	6 cut(s)	82, 85, 88, 91, 322, 325
PleI	GAGTC	2 cut(s)	807, 902
PpsI	GAGTC	2 cut(s)	807, 902
PpuMI	RGGWCCY	1 cut(s)	255
PshBI	ATTAAT	2 cut(s)	408, 558
Psp5II	RGGWCCY	1 cut(s)	255
Psp6I	CCWGG	2 cut(s)	209, 771
PspGI	CCWGG	2 cut(s)	209, 771
PspN4I	GGNNCC	3 cut(s)	256, 257, 734
PspPI	GGNCC	1 cut(s)	255
PspPPI	RGGWCCY	1 cut(s)	255
PstI	CTGCAG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	2 cut(s)	215, 239
RsaNI	GTAC	2 cut(s)	214, 238
RseI	CAYNNNNRTG	1 cut(s)	668
SaqAI	TTAA	3 cut(s)	408, 558, 762
SatI	GCNGC	6 cut(s)	81, 84, 87, 90, 321, 324
Sau3AI	GATC	4 cut(s)	302, 379, 421, 944
Sau96I	GGNCC	1 cut(s)	255
SchI	GAGTC	2 cut(s)	808, 902
ScrFI	CCNGG	2 cut(s)	211, 773
SfaNI	GCATC	1 cut(s)	371
SfcI	CTRYAG	2 cut(s)	78, 193
SinI	GGWCC	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	668
Sse9I	AATT	7 cut(s)	27, 100, 173, 328, 509, 655, 763
SsiI	CCGC	1 cut(s)	324
SspI	AATATT	2 cut(s)	466, 562
StyD4I	CCNGG	2 cut(s)	209, 771
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	146, 712
TasI	AATT	7 cut(s)	27, 100, 173, 328, 509, 655, 763
TauI	GCSGC	1 cut(s)	326
Tru1I	TTAA	3 cut(s)	408, 558, 762
Tru9I	TTAA	3 cut(s)	408, 558, 762
TscAI	CASTG	5 cut(s)	20, 637, 715, 829, 877
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	5 cut(s)	80, 83, 86, 89, 320
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	476, 652
TspRI	CASTG	5 cut(s)	20, 637, 715, 829, 877
VpaK11BI	GGWCC	1 cut(s)	255
VspI	ATTAAT	2 cut(s)	408, 558
XapI	RAATTY	2 cut(s)	173, 655
XceI	RCATGY	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.