Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0012750

Physical Location & Seq

Genomic Coordinates Forward (+)

25347209 .. 25349408

Gene Structure 2200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1114000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGATACTGCACAGTGGCCACAGGGAATTGTGGTGAATCCAATAGAGGAGATAGTGACAAACTCATGCCCTAAGCCTGCAGCAGCTAATAATTTGGAGAGGAAAGCAAGGCCTCAGAAGGAACAAGCCCTAAACTGTCCAAGGTGCAACTCCACCAACACGAAATTCTGCTACTACAACAACTACAGCCTCACACAACCAAGGTACTTCTGCAAGACTTGCAGAAGGTACTGGACTGAAGGTGGGTCCCTCAGAAGCATCCCAGTTGGAGGTGGTTCAAGGAAGAACAAGAGATCTTCATCCTCAAACAATTCTCCATCGACAACTTCTAACAATTCTTCTTCTTCCTCAGCATCCAAAAGGCTTCCTGATCTGATTCACCAAAACCCTAAAATCAACCAAGCCCAAGATCTGAACCTCACTTTCCCATCCACTAATCAAGATTTCAGGAATATTATCTCTGGTCACTTGCTTAATCACCATCATCAACAATTTCCAAACAACAACATCAATGATCAAAGCACCGACAAGCAGCAAAACCACATCTCTACTTCTTCCCCAACTTCTACTACTACAACTACAACAACATCCCACCTTTCTGCCTTAGAGCTTCTCACTGGATTGACTTCTAGGGGTTTGAACTCCTTCATGCCTATGCCAGTCCTATCAGACCCGAACAACAACAACTCTGTATATAATAGTCCCTCTGGACTAATTAATCCGATGCAGGATTTCAAGCCAACTCTTAATTTTTCACTGGATGGGCTTGGAAGTGGATATGGGAGTCTTCAAGGTTATCATGTTCAAGAGAGCAGTGGGAGGCTTTTGTTTCCATTTGAAGATTTGAAACAAGCTCCTTCGGGAGGAGGGATTAATGAGCAGAACAAGCAGCATGGAGATTCAACTGGGTATTGGACAGGAATGCTAGGAGGAGGATCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

315

Amino Acids

34.45

Weight (kDa)

9.0

Isoelectric Point (pI)

55.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	42 - 98	3.5e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24060
fragaria_vesca	FvH4_5g11410
malus_domestica	MD06G1114000.v1.1 MD14G1135300.v1.1
prunus_persica	Prupe.5G126800_v2.0.a1
pyrus_communis	pycom06g10660 pycom14g10850
rosa_chinensis	RchiOBHm_Chr7g0186471
rosa_laevigata	RLG00000004843
rosa_multiflora	Rmu_sc0000645.1_g000033
rosa_roxburghii	Rroxscaffold_3G00268120
rosa_rugosa	Rorug06G0474500
rosa_samantha	Rh7AG066800 Rh7BG082600 Rh7CG081100 Rh7DG081800
rosa_wichuraiana	Rw7G006800 Rw7G007040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	943
AcoI	YGGCCR	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	2 cut(s)	206, 230
AfiI	CCNNNNNNNGG	2 cut(s)	269, 863
AgsI	TTSAA	8 cut(s)	279, 640, 736, 791, 806, 839, 847, 903
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	3 cut(s)	86, 610, 854
AluI	AGCT	3 cut(s)	86, 610, 854
AlwI	GGATC	1 cut(s)	943
AoxI	GGCC	2 cut(s)	17, 110
ApeKI	GCWGC	4 cut(s)	80, 83, 532, 889
ApoI	RAATTY	1 cut(s)	164
AseI	ATTAAT	2 cut(s)	717, 873
Asp700I	GAANNNNTTC	1 cut(s)	644
AspS9I	GGNCC	1 cut(s)	246
AsuHPI	GGTGA	3 cut(s)	46, 371, 470
AvaII	GGWCC	1 cut(s)	246
BalI	TGGCCA	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	779
BbvCI	CCTCAGC	1 cut(s)	349
BbvI	GCAGC	4 cut(s)	92, 95, 544, 901
BccI	CCATC	4 cut(s)	325, 436, 489, 755
BclI	TGATCA	1 cut(s)	514
BfaI	CTAG	2 cut(s)	630, 926
BfmI	CTRYAG	2 cut(s)	78, 184
BglII	AGATCT	2 cut(s)	293, 409
BisI	GCNGC	4 cut(s)	81, 84, 533, 890
BlsI	GCNGC	4 cut(s)	82, 85, 534, 891
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	2 cut(s)	247, 248
BmrI	ACTGGG	2 cut(s)	257, 915
BmsI	GCATC	3 cut(s)	267, 362, 714
BmuI	ACTGGG	2 cut(s)	257, 915
BpiI	GAAGAC	1 cut(s)	779
Bpu10I	CCTNAGC	2 cut(s)	72, 349
BsaBI	GATNNNNATC	1 cut(s)	298
BsaJI	CCNNGG	2 cut(s)	140, 200
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 863
Bse1I	ACTGG	6 cut(s)	236, 263, 622, 659, 762, 910
Bse8I	GATNNNNATC	1 cut(s)	298
BseDI	CCNNGG	2 cut(s)	140, 200
BseGI	GGATG	6 cut(s)	258, 299, 353, 428, 587, 766
BseJI	GATNNNNATC	1 cut(s)	298
BseLI	CCNNNNNNNGG	2 cut(s)	269, 863
BseMII	CTCAG	3 cut(s)	128, 265, 363
BseNI	ACTGG	6 cut(s)	236, 263, 622, 659, 762, 910
BseRI	GAGGAG	3 cut(s)	62, 879, 945
BseXI	GCAGC	4 cut(s)	92, 95, 544, 901
BshFI	GGCC	2 cut(s)	19, 112
BslFI	GGGAC	2 cut(s)	232, 687
BslI	CCNNNNNNNGG	2 cut(s)	269, 863
BsmFI	GGGAC	2 cut(s)	232, 687
BsmI	GAATGC	1 cut(s)	927
BsnI	GGCC	2 cut(s)	19, 112
Bsp143I	GATC	5 cut(s)	293, 370, 409, 514, 935
BspANI	GGCC	2 cut(s)	19, 112
BspCNI	CTCAG	3 cut(s)	127, 264, 362
BspLI	GGNNCC	2 cut(s)	247, 248
BspMAI	CTGCAG	1 cut(s)	82
BspPI	GGATC	1 cut(s)	943
BsrI	ACTGG	6 cut(s)	236, 263, 622, 659, 762, 910
BssECI	CCNNGG	2 cut(s)	140, 200
BssMI	GATC	5 cut(s)	293, 370, 409, 514, 935
BssT1I	CCWWGG	2 cut(s)	140, 200
Bst4CI	ACNGT	2 cut(s)	15, 137
BstAPI	GCANNNNNTGC	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	5 cut(s)	72, 114, 251, 349, 604
BstENI	CCTNNNNNAGG	1 cut(s)	861
BstF5I	GGATG	6 cut(s)	258, 299, 353, 428, 587, 766
BstKTI	GATC	5 cut(s)	296, 373, 412, 517, 938
BstMBI	GATC	5 cut(s)	293, 370, 409, 514, 935
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 886
BstSFI	CTRYAG	2 cut(s)	78, 184
BstV1I	GCAGC	4 cut(s)	92, 95, 544, 901
BstV2I	GAAGAC	1 cut(s)	779
BstX2I	RGATCY	2 cut(s)	293, 409
BstYI	RGATCY	2 cut(s)	293, 409
BsuRI	GGCC	2 cut(s)	19, 112
BtsCI	GGATG	6 cut(s)	258, 299, 353, 428, 587, 766
BtsI	GCAGTG	1 cut(s)	820
BtsIMutI	CAGTG	4 cut(s)	20, 615, 755, 820
Cac8I	GCNNGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	246
Csp6I	GTAC	2 cut(s)	205, 229
CviAII	CATG	5 cut(s)	66, 649, 800, 893, 939
CviQI	GTAC	2 cut(s)	205, 229
DdeI	CTNAG	5 cut(s)	72, 114, 251, 349, 604
DpnI	GATC	5 cut(s)	295, 372, 411, 516, 937
DpnII	GATC	5 cut(s)	293, 370, 409, 514, 935
EaeI	YGGCCR	1 cut(s)	17
Eco130I	CCWWGG	2 cut(s)	140, 200
Eco147I	AGGCCT	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	258
EcoNI	CCTNNNNNAGG	1 cut(s)	861
EcoO109I	RGGNCCY	1 cut(s)	246
EcoT14I	CCWWGG	2 cut(s)	140, 200
ErhI	CCWWGG	2 cut(s)	140, 200
FaeI	CATG	5 cut(s)	69, 652, 803, 896, 942
FaiI	YATR	9 cut(s)	67, 650, 656, 694, 696, 780, 801, 894, 940
FaqI	GGGAC	2 cut(s)	232, 687
FatI	CATG	5 cut(s)	65, 648, 799, 892, 938
FbaI	TGATCA	1 cut(s)	514
Fnu4HI	GCNGC	4 cut(s)	81, 84, 533, 890
FokI	GGATG	6 cut(s)	245, 286, 340, 415, 574, 773
Fsp4HI	GCNGC	4 cut(s)	81, 84, 533, 890
FspBI	CTAG	2 cut(s)	630, 926
GluI	GCNGC	4 cut(s)	81, 84, 533, 890
HaeIII	GGCC	2 cut(s)	19, 112
Hin1II	CATG	5 cut(s)	69, 652, 803, 896, 942
HinfI	GANTC	4 cut(s)	37, 376, 784, 899
HphI	GGTGA	3 cut(s)	46, 371, 470
Hpy188I	TCNGA	6 cut(s)	117, 254, 375, 414, 670, 723
Hpy188III	TCNNGA	6 cut(s)	368, 440, 448, 708, 806, 861
HpyAV	CCTTC	5 cut(s)	112, 219, 233, 655, 867
HpyCH4III	ACNGT	2 cut(s)	15, 137
HpyCH4V	TGCA	6 cut(s)	11, 80, 147, 213, 222, 727
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 886
HpyF3I	CTNAG	5 cut(s)	72, 114, 251, 349, 604
Hsp92II	CATG	5 cut(s)	69, 652, 803, 896, 942
KflI	GGGWCCC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	5 cut(s)	293, 370, 409, 514, 935
LmnI	GCTCC	1 cut(s)	859
Lsp1109I	GCAGC	4 cut(s)	92, 95, 544, 901
LweI	GCATC	3 cut(s)	267, 362, 714
MaeI	CTAG	2 cut(s)	630, 926
MaeIII	GTNAC	2 cut(s)	55, 464
MalI	GATC	5 cut(s)	295, 372, 411, 516, 937
MboI	GATC	5 cut(s)	293, 370, 409, 514, 935
MboII	GAAGA	8 cut(s)	288, 295, 330, 333, 336, 546, 779, 851
MflI	RGATCY	2 cut(s)	293, 409
MlsI	TGGCCA	1 cut(s)	19
MluCI	AATT	8 cut(s)	27, 91, 164, 310, 334, 491, 714, 748
MluNI	TGGCCA	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	793
MmeI	TCCRAC	1 cut(s)	247
Mox20I	TGGCCA	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	644
MscI	TGGCCA	1 cut(s)	19
MseI	TTAA	4 cut(s)	474, 717, 747, 873
MslI	CAYNNNNRTG	1 cut(s)	653
Msp20I	TGGCCA	1 cut(s)	19
Mva1269I	GAATGC	1 cut(s)	927
MwoI	GCNNNNNNNGC	2 cut(s)	219, 886
NdeII	GATC	5 cut(s)	293, 370, 409, 514, 935
NlaIII	CATG	5 cut(s)	69, 652, 803, 896, 942
NlaIV	GGNNCC	2 cut(s)	247, 248
NmuCI	GTSAC	2 cut(s)	55, 464
PceI	AGGCCT	1 cut(s)	112
PctI	GAATGC	1 cut(s)	927
PdmI	GAANNNNTTC	1 cut(s)	644
PfeI	GAWTC	3 cut(s)	37, 376, 899
PkrI	GCNGC	4 cut(s)	82, 85, 534, 891
PleI	GAGTC	1 cut(s)	792
PpsI	GAGTC	1 cut(s)	792
PpuMI	RGGWCCY	1 cut(s)	246
PshBI	ATTAAT	2 cut(s)	717, 873
Psp5II	RGGWCCY	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	247, 248
PspPI	GGNCC	1 cut(s)	246
PspPPI	RGGWCCY	1 cut(s)	246
PstI	CTGCAG	1 cut(s)	82
PsuI	RGATCY	2 cut(s)	293, 409
RsaI	GTAC	2 cut(s)	206, 230
RsaNI	GTAC	2 cut(s)	205, 229
RseI	CAYNNNNRTG	1 cut(s)	653
SaqAI	TTAA	4 cut(s)	474, 717, 747, 873
SatI	GCNGC	4 cut(s)	81, 84, 533, 890
Sau3AI	GATC	5 cut(s)	293, 370, 409, 514, 935
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	1 cut(s)	793
SfaNI	GCATC	3 cut(s)	267, 362, 714
SfcI	CTRYAG	2 cut(s)	78, 184
SinI	GGWCC	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	653
Sse9I	AATT	8 cut(s)	27, 91, 164, 310, 334, 491, 714, 748
SseBI	AGGCCT	1 cut(s)	112
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	2 cut(s)	630, 926
StuI	AGGCCT	1 cut(s)	112
StyI	CCWWGG	2 cut(s)	140, 200
TaaI	ACNGT	2 cut(s)	15, 137
TaqI	TCGA	1 cut(s)	320
TasI	AATT	8 cut(s)	27, 91, 164, 310, 334, 491, 714, 748
TfiI	GAWTC	3 cut(s)	37, 376, 899
Tru1I	TTAA	4 cut(s)	474, 717, 747, 873
Tru9I	TTAA	4 cut(s)	474, 717, 747, 873
TscAI	CASTG	4 cut(s)	20, 622, 762, 820
TseFI	GTSAC	2 cut(s)	55, 464
TseI	GCWGC	4 cut(s)	80, 83, 532, 889
Tsp45I	GTSAC	2 cut(s)	55, 464
TspDTI	ATGAA	2 cut(s)	288, 637
TspRI	CASTG	4 cut(s)	20, 622, 762, 820
VpaK11BI	GGWCC	1 cut(s)	246
VspI	ATTAAT	2 cut(s)	717, 873
XagI	CCTNNNNNAGG	1 cut(s)	861
XapI	RAATTY	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	644
XspI	CTAG	2 cut(s)	630, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.