AT4G24710

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
12745547 .. 12749134
3588 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24710.3

Sequence Viewer

Length: 1404 bp
ATGGTGGAGGACCCGATTCCTCTTCCAAACGCTTCCATGGAGGTCTCTTACCAAAACCCCATTGAAGCAGCGACTATTCCAGTGCAAATAGCCGTCGCTGAGCCAGTCGCTACACCCAATCCTCCTCCTTGCCTCCACGAGAACAAATTCCTCGTATCTGTGGAGGTCTGCTTAAAGCCTTCAAGCACGGCTCGTCTAGAGGATGTCCAGAGAGCTGTAGAACGGATGCTGGAAAATAGGAGCATGAGCTATGCAGATGGACTGGTTTTGATTCCTGCAGACGACTTGTTCCTAGTTGATAATGTGCAAAGGATATGCATTTGTGATACAGAGGAATGGGTGAAAAATAATGATGTTCTCTTGTTCTGGCAAGTGAAGCCAGTTGTGCACACCTTTCAGCTCATTGAAGAAGGACCATGTGAGGACTTGTGTGCAGATGGACAACCTGCTAGCTTTAACGAATGGATTCTACCCGCAAAGGAGTTTGATGGCTTATGGGAAAGCCTAATATATGAATCTGGACTTAAGCAAAGGTTACTACGTTATGCTGCGAGTGCATTGCTGTTCACCCAGAAGGGTGTTAACCCAAATCTCGTTTCATGGAACAGGATTATTCTTTTGCACGGACCACCAGGGACTGGCAAAACATCCCTTTGCAAAGCGTTGGCTCAAAAGCTTTCAATCCGGTGCAACTCCAGATATCCACATTGCCAATTGATTGAAGTCAATGCTCACTCTCTATTTAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTTGCCAAGCTTTTCCAAAAAATCCAAGAGATGGTGGAGGAAGATGGAAATCTGGTATTTGTTTTGATCGATGAAGTAGAAAGTCTTGCTGCTGCTCGAAAAGCTGCATTGTCTGGCTCAGAACCGTCAGATTCTATCCGGGTTGTGAATGCACTACTCACCCAAATGGACAAATTGAAATCAGCACCGAATGTGATAATCCTTACAACATCAAACATAACTACTGCTATTGATGTTGCTTTCGTGGATCGAGCTGACATAAAAGCTTATGTTGGCCCTCCAACTCTTCATGTTCGTTATGAAATATTAAGGTCTTGTGTTGAGGAATTAATAAGTAAAGGGATCATATCAAGTTTCCAGGGCTGTGATGGACTCTCTATTCCAAGCTTTTCAAGTTTGAAAGAAAAGTTAAGTGAAAGTGAGGTTCATGATACAAATACAGTTCCTTGGTTCTGCAAACAGTTGATAGAAGCTGCAAAAGGGTGCGAGGGTTTAAGTGGGAGATCATTGAGGAAGCTTCCGTTTTTAGCGCACGCAGCACTTGCAGATCCATATAGCCATGATCCAAGTAATTTCTTGTGTACAATGATAGAAACAGCTAAGAGAGAGAAGTCTGAACAACCTGAATGA

Protein Analysis

467

Amino Acids

51.7

Weight (kDa)

5.15

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRIP13_N PF23563 60 - 148 2.6e-25 TRIP13 N-terminal domain
AAA_22 PF13401 215 - 308 1.1e-07 AAA domain
AAA_16 PF13191 215 - 331 1.1e-06 AAA ATPase domain
AAA PF00004 217 - 362 7.3e-28 ATPase family associated with various cellular activities (AAA)
AAA_lid_TRIP13_C PF23242 366 - 474 3.1e-35 TRIP13-like, AAA+ ATPase lid C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 454
AccB7I CCANNNNNTGG 2 cut(s) 638, 805
AciI CCGC 1 cut(s) 474
AclWI GGATC 4 cut(s) 1029, 1124, 1316, 1331
AcsI RAATTY 1 cut(s) 146
AfaI GTAC 1 cut(s) 1357
AfiI CCNNNNNNNGG 2 cut(s) 638, 805
AflII CTTAAG 1 cut(s) 524
AgsI TTSAA 8 cut(s) 65, 183, 407, 681, 722, 952, 1167, 1174
AjnI CCWGG 2 cut(s) 631, 1131
AjuI GAANNNNNNNTTGG 2 cut(s) 580, 612
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 1 cut(s) 49
Alw44I GTGCAC 1 cut(s) 386
AlwI GGATC 4 cut(s) 1029, 1124, 1316, 1331
AlwNI CAGNNNCTG 1 cut(s) 638
AoxI GGCC 1 cut(s) 1048
ApaLI GTGCAC 1 cut(s) 386
ApeKI GCWGC 7 cut(s) 68, 548, 863, 866, 878, 1247, 1310
ApoI RAATTY 1 cut(s) 146
AseI ATTAAT 1 cut(s) 1103
Asp700I GAANNNNTTC 2 cut(s) 146, 465
AspLEI GCGC 1 cut(s) 1306
AspS9I GGNCC 4 cut(s) 10, 413, 626, 1049
AsuC2I CCSGG 1 cut(s) 914
AsuHPI GGTGA 3 cut(s) 352, 559, 925
AsuNHI GCTAGC 1 cut(s) 449
AvaII GGWCC 3 cut(s) 10, 413, 626
BaeGI GKGCMC 1 cut(s) 390
BauI CACGAG 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 390
BbvI GCAGC 7 cut(s) 80, 535, 850, 853, 865, 1234, 1322
BccI CCATC 6 cut(s) 251, 431, 482, 799, 812, 1136
BceAI ACGGC 2 cut(s) 77, 204
BcgI CGANNNNNNTGC 2 cut(s) 541, 575
BciT130I CCWGG 2 cut(s) 633, 1133
BcnI CCSGG 1 cut(s) 914
BcoDI GTCTC 1 cut(s) 49
BfaI CTAG 3 cut(s) 197, 293, 450
BfmI CTRYAG 2 cut(s) 216, 276
BfrI CTTAAG 1 cut(s) 524
BfuAI ACCTGC 1 cut(s) 454
BisI GCNGC 7 cut(s) 69, 549, 864, 867, 879, 1248, 1311
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 7 cut(s) 70, 550, 865, 868, 880, 1249, 1312
Bme1390I CCNGG 3 cut(s) 633, 914, 1133
Bme18I GGWCC 3 cut(s) 10, 413, 626
BmgT120I GGNCC 4 cut(s) 10, 413, 626, 1049
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 3 cut(s) 633, 914, 1133
BmsI GCATC 1 cut(s) 216
BmtI GCTAGC 1 cut(s) 453
BpmI CTGGAG 1 cut(s) 679
Bpu1102I GCTNAGC 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 914
Bsa29I ATCGAT 1 cut(s) 843
BsaBI GATNNNNATC 1 cut(s) 822
BsaI GGTCTC 1 cut(s) 49
BsaJI CCNNGG 4 cut(s) 36, 632, 1132, 1220
BsaWI WCCGGW 1 cut(s) 684
Bsc4I CCNNNNNNNGG 2 cut(s) 638, 805
Bse1I ACTGG 5 cut(s) 80, 104, 267, 380, 643
Bse3DI GCAATG 2 cut(s) 557, 706
Bse8I GATNNNNATC 1 cut(s) 822
BseBI CCWGG 2 cut(s) 633, 1133
BseCI ATCGAT 1 cut(s) 843
BseDI CCNNGG 4 cut(s) 36, 632, 1132, 1220
BseGI GGATG 3 cut(s) 208, 231, 647
BseJI GATNNNNATC 1 cut(s) 822
BseLI CCNNNNNNNGG 2 cut(s) 638, 805
BseMI GCAATG 2 cut(s) 557, 706
BseMII CTCAG 2 cut(s) 90, 906
BseNI ACTGG 5 cut(s) 80, 104, 267, 380, 643
BseRI GAGGAG 1 cut(s) 114
BseSI GKGCMC 1 cut(s) 390
BseXI GCAGC 7 cut(s) 80, 535, 850, 853, 865, 1234, 1322
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 1 cut(s) 1050
BshVI ATCGAT 1 cut(s) 843
BsiHKAI GWGCWC 1 cut(s) 390
BsiSI CCGG 2 cut(s) 685, 913
BslFI GGGAC 1 cut(s) 649
BslI CCNNNNNNNGG 2 cut(s) 638, 805
BsmAI GTCTC 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 649
BsmI GAATGC 1 cut(s) 928
BsnI GGCC 1 cut(s) 1050
Bso31I GGTCTC 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 390
Bsp1407I TGTACA 1 cut(s) 1355
Bsp143I GATC 6 cut(s) 840, 1021, 1116, 1277, 1321, 1336
Bsp1720I GCTNAGC 1 cut(s) 99
Bsp19I CCATGG 1 cut(s) 36
BspACI CCGC 1 cut(s) 474
BspANI GGCC 1 cut(s) 1050
BspCNI CTCAG 2 cut(s) 91, 905
BspDI ATCGAT 1 cut(s) 843
BspHI TCATGA 1 cut(s) 1201
BspLI GGNNCC 1 cut(s) 12
BspMAI CTGCAG 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 454
BspOI GCTAGC 1 cut(s) 453
BspPI GGATC 4 cut(s) 1029, 1124, 1316, 1331
BspTI CTTAAG 1 cut(s) 524
BspTNI GGTCTC 1 cut(s) 49
BsrDI GCAATG 2 cut(s) 557, 706
BsrGI TGTACA 1 cut(s) 1355
BsrI ACTGG 5 cut(s) 80, 104, 267, 380, 643
BssECI CCNNGG 4 cut(s) 36, 632, 1132, 1220
BssMI GATC 6 cut(s) 840, 1021, 1116, 1277, 1321, 1336
BssSI CACGAG 1 cut(s) 137
BssT1I CCWWGG 2 cut(s) 36, 1220
Bst2BI CACGAG 1 cut(s) 137
Bst2UI CCWGG 2 cut(s) 633, 1133
Bst4CI ACNGT 3 cut(s) 900, 1216, 1236
Bst6I CTCTTC 2 cut(s) 27, 1065
BstAFI CTTAAG 1 cut(s) 524
BstAPI GCANNNNNTGC 1 cut(s) 1316
BstAUI TGTACA 1 cut(s) 1355
BstC8I GCNNGC 3 cut(s) 451, 770, 1308
BstDEI CTNAG 3 cut(s) 99, 892, 1374
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 3 cut(s) 208, 231, 647
BstHHI GCGC 1 cut(s) 1306
BstKTI GATC 6 cut(s) 843, 1024, 1119, 1280, 1324, 1339
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 6 cut(s) 840, 1021, 1116, 1277, 1321, 1336
BstMWI GCNNNNNNNGC 6 cut(s) 376, 385, 554, 875, 1310, 1316
BstNI CCWGG 2 cut(s) 633, 1133
BstSCI CCNGG 3 cut(s) 631, 912, 1131
BstSFI CTRYAG 2 cut(s) 216, 276
BstSLI GKGCMC 1 cut(s) 390
BstV1I GCAGC 7 cut(s) 80, 535, 850, 853, 865, 1234, 1322
BstX2I RGATCY 1 cut(s) 1321
BstYI RGATCY 1 cut(s) 1321
Bsu15I ATCGAT 1 cut(s) 843
BsuRI GGCC 1 cut(s) 1050
BsuTUI ATCGAT 1 cut(s) 843
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 3 cut(s) 208, 231, 647
BtsIMutI CAGTG 1 cut(s) 87
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 3 cut(s) 451, 770, 1308
CaiI CAGNNNCTG 1 cut(s) 638
CciI TCATGA 1 cut(s) 1201
CfoI GCGC 1 cut(s) 1306
Cfr13I GGNCC 4 cut(s) 10, 413, 626, 1049
ClaI ATCGAT 1 cut(s) 843
Csp6I GTAC 1 cut(s) 1356
CviAII CATG 7 cut(s) 37, 244, 417, 600, 1064, 1202, 1334
CviQI GTAC 1 cut(s) 1356
DdeI CTNAG 3 cut(s) 99, 892, 1374
DpnI GATC 6 cut(s) 842, 1023, 1118, 1279, 1323, 1338
DpnII GATC 6 cut(s) 840, 1021, 1116, 1277, 1321, 1336
Eam1104I CTCTTC 2 cut(s) 27, 1065
EarI CTCTTC 2 cut(s) 27, 1065
Eco130I CCWWGG 2 cut(s) 36, 1220
Eco31I GGTCTC 1 cut(s) 49
Eco32I GATATC 1 cut(s) 701
Eco47I GGWCC 3 cut(s) 10, 413, 626
EcoO109I RGGNCCY 1 cut(s) 10
EcoRII CCWGG 2 cut(s) 631, 1131
EcoRV GATATC 1 cut(s) 701
EcoT14I CCWWGG 2 cut(s) 36, 1220
EcoT22I ATGCAT 1 cut(s) 320
ErhI CCWWGG 2 cut(s) 36, 1220
FaeI CATG 7 cut(s) 40, 247, 420, 603, 1067, 1205, 1337
FaqI GGGAC 1 cut(s) 649
FatI CATG 7 cut(s) 36, 243, 416, 599, 1063, 1201, 1333
FauI CCCGC 1 cut(s) 481
Fnu4HI GCNGC 7 cut(s) 69, 549, 864, 867, 879, 1248, 1311
FokI GGATG 3 cut(s) 215, 238, 634
Fsp4HI GCNGC 7 cut(s) 69, 549, 864, 867, 879, 1248, 1311
FspBI CTAG 3 cut(s) 197, 293, 450
GlaI GCGC 1 cut(s) 1305
GluI GCNGC 7 cut(s) 69, 549, 864, 867, 879, 1248, 1311
GsuI CTGGAG 1 cut(s) 679
HaeIII GGCC 1 cut(s) 1050
HapII CCGG 2 cut(s) 685, 913
HhaI GCGC 1 cut(s) 1306
Hin1II CATG 7 cut(s) 40, 247, 420, 603, 1067, 1205, 1337
Hin6I GCGC 1 cut(s) 1304
HinP1I GCGC 1 cut(s) 1304
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HindIII AAGCTT 5 cut(s) 674, 782, 1038, 1159, 1289
HinfI GANTC 6 cut(s) 16, 271, 466, 515, 905, 1146
HpaI GTTAAC 1 cut(s) 583
HpaII CCGG 2 cut(s) 685, 913
HphI GGTGA 3 cut(s) 352, 559, 925
Hpy166II GTNNAC 4 cut(s) 388, 567, 583, 1356
Hpy188I TCNGA 4 cut(s) 760, 895, 904, 1390
Hpy188III TCNNGA 5 cut(s) 197, 208, 519, 696, 1202
Hpy8I GTNNAC 4 cut(s) 388, 567, 583, 1356
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 3 cut(s) 189, 404, 568
HpyCH4III ACNGT 3 cut(s) 900, 1216, 1236
HpyCH4IV ACGT 1 cut(s) 541
HpyF10VI GCNNNNNNNGC 6 cut(s) 376, 385, 554, 875, 1310, 1316
HpyF3I CTNAG 3 cut(s) 99, 892, 1374
HpySE526I ACGT 1 cut(s) 541
Hsp92II CATG 7 cut(s) 40, 247, 420, 603, 1067, 1205, 1337
HspAI GCGC 1 cut(s) 1304
KspAI GTTAAC 1 cut(s) 583
Kzo9I GATC 6 cut(s) 840, 1021, 1116, 1277, 1321, 1336
LmnI GCTCC 1 cut(s) 240
Lsp1109I GCAGC 7 cut(s) 80, 535, 850, 853, 865, 1234, 1322
LweI GCATC 1 cut(s) 216
MaeI CTAG 3 cut(s) 197, 293, 450
MaeII ACGT 1 cut(s) 541
MaeIII GTNAC 1 cut(s) 534
MalI GATC 6 cut(s) 842, 1023, 1118, 1279, 1323, 1338
MboI GATC 6 cut(s) 840, 1021, 1116, 1277, 1321, 1336
MboII GAAGA 4 cut(s) 14, 419, 827, 1052
MfeI CAATTG 1 cut(s) 713
MflI RGATCY 1 cut(s) 1321
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 5 cut(s) 146, 713, 947, 1100, 1345
MlyI GAGTC 1 cut(s) 1140
MmeI TCCRAC 1 cut(s) 1079
Mph1103I ATGCAT 1 cut(s) 320
MroXI GAANNNNTTC 2 cut(s) 146, 465
MseI TTAA 8 cut(s) 173, 456, 525, 582, 1082, 1103, 1184, 1268
MslI CAYNNNNRTG 1 cut(s) 938
MspCI CTTAAG 1 cut(s) 524
MspI CCGG 2 cut(s) 685, 913
MspR9I CCNGG 3 cut(s) 633, 914, 1133
MunI CAATTG 1 cut(s) 713
Mva1269I GAATGC 1 cut(s) 928
MvaI CCWGG 2 cut(s) 633, 1133
MwoI GCNNNNNNNGC 6 cut(s) 376, 385, 554, 875, 1310, 1316
NciI CCSGG 1 cut(s) 914
NcoI CCATGG 1 cut(s) 36
NdeII GATC 6 cut(s) 840, 1021, 1116, 1277, 1321, 1336
NheI GCTAGC 1 cut(s) 449
NlaIII CATG 7 cut(s) 40, 247, 420, 603, 1067, 1205, 1337
NlaIV GGNNCC 1 cut(s) 12
NsiI ATGCAT 1 cut(s) 320
PagI TCATGA 1 cut(s) 1201
PctI GAATGC 1 cut(s) 928
PdmI GAANNNNTTC 2 cut(s) 146, 465
PfeI GAWTC 5 cut(s) 16, 271, 466, 515, 905
PflMI CCANNNNNTGG 2 cut(s) 638, 805
PkrI GCNGC 7 cut(s) 70, 550, 865, 868, 880, 1249, 1312
PleI GAGTC 1 cut(s) 1140
PpsI GAGTC 1 cut(s) 1140
PpuMI RGGWCCY 1 cut(s) 10
PshBI ATTAAT 1 cut(s) 1103
Psp5II RGGWCCY 1 cut(s) 10
Psp6I CCWGG 2 cut(s) 631, 1131
PspGI CCWGG 2 cut(s) 631, 1131
PspN4I GGNNCC 1 cut(s) 12
PspPI GGNCC 4 cut(s) 10, 413, 626, 1049
PspPPI RGGWCCY 1 cut(s) 10
PstI CTGCAG 1 cut(s) 280
PstNI CAGNNNCTG 1 cut(s) 638
PsuI RGATCY 1 cut(s) 1321
RsaI GTAC 1 cut(s) 1357
RsaNI GTAC 1 cut(s) 1356
RseI CAYNNNNRTG 1 cut(s) 938
SaqAI TTAA 8 cut(s) 173, 456, 525, 582, 1082, 1103, 1184, 1268
SatI GCNGC 7 cut(s) 69, 549, 864, 867, 879, 1248, 1311
Sau3AI GATC 6 cut(s) 840, 1021, 1116, 1277, 1321, 1336
Sau96I GGNCC 4 cut(s) 10, 413, 626, 1049
SchI GAGTC 1 cut(s) 1140
ScrFI CCNGG 3 cut(s) 633, 914, 1133
SduI GDGCHC 1 cut(s) 390
SfaNI GCATC 1 cut(s) 216
SfcI CTRYAG 2 cut(s) 216, 276
SinI GGWCC 3 cut(s) 10, 413, 626
SmiMI CAYNNNNRTG 1 cut(s) 938
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
Sse9I AATT 5 cut(s) 146, 713, 947, 1100, 1345
SsiI CCGC 1 cut(s) 474
SspI AATATT 1 cut(s) 1080
SspMI CTAG 3 cut(s) 197, 293, 450
StyD4I CCNGG 3 cut(s) 631, 912, 1131
StyI CCWWGG 2 cut(s) 36, 1220
TaaI ACNGT 3 cut(s) 900, 1216, 1236
TaiI ACGT 1 cut(s) 544
TaqI TCGA 3 cut(s) 843, 871, 1024
TasI AATT 5 cut(s) 146, 713, 947, 1100, 1345
TatI WGTACW 1 cut(s) 1355
TfiI GAWTC 5 cut(s) 16, 271, 466, 515, 905
Tru1I TTAA 8 cut(s) 173, 456, 525, 582, 1082, 1103, 1184, 1268
Tru9I TTAA 8 cut(s) 173, 456, 525, 582, 1082, 1103, 1184, 1268
TscAI CASTG 1 cut(s) 87
TseI GCWGC 7 cut(s) 68, 548, 863, 866, 878, 1247, 1310
TspDTI ATGAA 6 cut(s) 528, 588, 861, 1052, 1089, 1190
TspGWI ACGGA 3 cut(s) 238, 639, 1284
TspRI CASTG 1 cut(s) 87
Van91I CCANNNNNTGG 2 cut(s) 638, 805
Vha464I CTTAAG 1 cut(s) 524
VneI GTGCAC 1 cut(s) 386
VpaK11BI GGWCC 3 cut(s) 10, 413, 626
VspI ATTAAT 1 cut(s) 1103
XapI RAATTY 1 cut(s) 146
XbaI TCTAGA 1 cut(s) 196
XcmI CCANNNNNNNNNTGG 1 cut(s) 1139
XmnI GAANNNNTTC 2 cut(s) 146, 465
XspI CTAG 3 cut(s) 197, 293, 450
Zsp2I ATGCAT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.