FvH4_5g06320

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
3711132 .. 3715113
3982 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06320.t3

Sequence Viewer

Length: 1380 bp
ATGAGTACTCCGAGCCCCATGGAGATCTACGATCAAAACCCCCAACACGCCGATGATATCCCTGACCAAAACGGCGTCGTCCAACTCGTCGCTTCAACTCCTCCCGTCATTCCCCAGGACAAAGTCCTCGTTTCAGTTGAGGTTTGCCTCAAGGCGTCGAGCACTGCTCGGATTGACGATGTGCGGTCAGCTGTTGAGAGAATGCTTGAGAAGAGGAGTTTGAGCTATACTGATGGACCCGTGCCGGTGCCGCCTGATGATCTGTTCCTCACAGAAAATGTGGAAAGAATCTGTATTTGTGACACTGATGAGTGGGTGCAGAATCATGACATCCTTTTGTTCTGGCAAGCGAGGCCTGTTGTGCATGTGTTTCAGCTTAGTGAAGAGGGAGCATGTGAGGATGTAAGTGGGGATGGACAACCTTCTACTTTCAATGAATGGATTCTTCCAGCAAAGGAATTCGATGGCATGTGGGAAAGCTTAATATATGAATCTGGGCTGAAGGCAAGGTTGCTGCGGTATGCAGCTAGTGCGTTGCATTTTACTGAAAAGGGTGTTAATCCTTTCCTTGTGTCGTGGAATCGCATTGTTCTTTTACATGGGCCTCCAGGGACTGGAAAAACCTCTTTATGCAAAGCATTGGCTCAGAAGTTATCTATCCGTTTTAACTCCAGATATCCACAGTCCCAATTGGTTGAAGTTAATGCACATTCTCTATTCAGCAAATGGTTCTCTGAAAGTGGCAAGTTGGTTGCAAAGCTATTCCAAAAACTTCAAGAGATGGTAGAGGAGGAAACAAATCTGGTATTTGTTTTGATTGATGAAGTTGAAAGCCTTGCTGCTGCTAGAAAATCCGCTTTATCTGGTTCTGAACCTTCAGATTCTATTCGGGTGGTGAATGCGCTACTAACTCAGCTGGACAAATTGAAATCAGCACCAAATGTGATAATTTTGACAACATCCAACATAACTGCTGCTATTGATATCGCTTTTGTTGATCGAGCTGATATAAAAGCATATGTTGGTCCTCCAACTCTACAAGCGCGTTATGAAATCCTAAGGTCCTGCTTAGAGGAACTCATACGAACAGGAATTTTATCAAGTTTTGAGGGTTGTGAAAGCCTCATGCTTCTGAATTATGCTAGCTTGAAAGAGAAATTGAATATGCCTCAGATTCACGATGCTCAGACATCACTACACCTGTGTAGGCAATTGCTTGAAACTGCAGAAGCGTGTGACGGATTGAGTGGACGGTCTTTACGAAAGCTTCCATTCCTAGCGCATGCTGCTCTTTCAAATCCTTACAGTTGTGACCCTAGCAAGTTCTTATGCGCAATGACAGATACAGCAAGGAGGGAGCGGTCTGAGATACCTGATTGA

Protein Analysis

460

Amino Acids

50.98

Weight (kDa)

5.08

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRIP13_N PF23563 40 - 129 1.4e-29 TRIP13 N-terminal domain
AAA_16 PF13191 195 - 284 2.1e-06 AAA ATPase domain
AAA_22 PF13401 195 - 269 9.6e-06 AAA domain
AAA PF00004 197 - 261 6.6e-13 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1333
AccB1I GGYRCC 1 cut(s) 247
AccB7I CCANNNNNTGG 1 cut(s) 614
AccBSI CCGCTC 1 cut(s) 1360
AccII CGCG 1 cut(s) 1045
AciI CCGC 5 cut(s) 184, 251, 517, 855, 1360
AcsI RAATTY 2 cut(s) 458, 1092
AcuI CTGAAG 2 cut(s) 521, 861
AcyI GRCGYC 2 cut(s) 75, 155
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 614
AjnI CCWGG 2 cut(s) 114, 607
Alw21I GWGCWC 1 cut(s) 164
AlwNI CAGNNNCTG 1 cut(s) 614
AoxI GGCC 2 cut(s) 353, 602
ApeKI GCWGC 6 cut(s) 514, 524, 839, 842, 974, 1286
ApoI RAATTY 2 cut(s) 458, 1092
Asp700I GAANNNNTTC 1 cut(s) 441
AspLEI GCGC 4 cut(s) 904, 1045, 1282, 1334
AspS9I GGNCC 4 cut(s) 236, 602, 1025, 1062
AsuHPI GGTGA 1 cut(s) 907
AsuNHI GCTAGC 1 cut(s) 1142
AvaII GGWCC 3 cut(s) 236, 1025, 1062
AxyI CCTNAGG 1 cut(s) 1058
BanI GGYRCC 1 cut(s) 247
BanII GRGCYC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 164
BbvI GCAGC 6 cut(s) 501, 536, 826, 829, 961, 1273
BccI CCATC 4 cut(s) 227, 407, 458, 775
BceAI ACGGC 1 cut(s) 88
BciT130I CCWGG 2 cut(s) 116, 609
BfaI CTAG 5 cut(s) 528, 846, 1143, 1277, 1317
BfmI CTRYAG 1 cut(s) 1224
BglII AGATCT 1 cut(s) 24
BisI GCNGC 7 cut(s) 251, 515, 525, 840, 843, 975, 1287
BlsI GCNGC 7 cut(s) 252, 516, 526, 841, 844, 976, 1288
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 116, 609
Bme18I GGWCC 3 cut(s) 236, 1025, 1062
BmgT120I GGNCC 4 cut(s) 236, 602, 1025, 1062
BmiI GGNNCC 2 cut(s) 238, 249
BmrFI CCNGG 2 cut(s) 116, 609
BmsI GCATC 1 cut(s) 1171
BmtI GCTAGC 1 cut(s) 1146
BplI GAGNNNNNCTC 2 cut(s) 151, 183
BpmI CTGGAG 2 cut(s) 591, 655
BpuEI CTTGAG 2 cut(s) 134, 227
BsaHI GRCGYC 2 cut(s) 75, 155
BsaJI CCNNGG 3 cut(s) 18, 114, 608
Bsc4I CCNNNNNNNGG 1 cut(s) 614
Bse118I RCCGGY 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 619
Bse21I CCTNAGG 1 cut(s) 1058
Bse3DI GCAATG 1 cut(s) 1341
BseBI CCWGG 2 cut(s) 116, 609
BseDI CCNNGG 3 cut(s) 18, 114, 608
BseGI GGATG 4 cut(s) 330, 406, 418, 959
BseLI CCNNNNNNNGG 1 cut(s) 614
BseMI GCAATG 1 cut(s) 1341
BseMII CTCAG 5 cut(s) 659, 926, 1184, 1199, 1356
BseNI ACTGG 1 cut(s) 619
BseRI GAGGAG 3 cut(s) 90, 229, 803
BseXI GCAGC 6 cut(s) 501, 536, 826, 829, 961, 1273
BsgI GTGCAG 1 cut(s) 338
Bsh1236I CGCG 1 cut(s) 1045
BshFI GGCC 2 cut(s) 355, 604
BshNI GGYRCC 1 cut(s) 247
BsiHKAI GWGCWC 1 cut(s) 164
BsiSI CCGG 1 cut(s) 245
BslFI GGGAC 2 cut(s) 625, 670
BslI CCNNNNNNNGG 1 cut(s) 614
BsmFI GGGAC 2 cut(s) 625, 670
BsmI GAATGC 2 cut(s) 207, 904
BsnI GGCC 2 cut(s) 355, 604
Bsp1286I GDGCHC 2 cut(s) 17, 164
Bsp143I GATC 4 cut(s) 24, 31, 259, 997
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 5 cut(s) 184, 251, 517, 855, 1360
BspANI GGCC 2 cut(s) 355, 604
BspCNI CTCAG 5 cut(s) 658, 925, 1183, 1198, 1357
BspFNI CGCG 1 cut(s) 1045
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 238, 249
BspMAI CTGCAG 1 cut(s) 1228
BspOI GCTAGC 1 cut(s) 1146
BspT107I GGYRCC 1 cut(s) 247
BsrBI CCGCTC 1 cut(s) 1360
BsrDI GCAATG 1 cut(s) 1341
BsrFI RCCGGY 1 cut(s) 244
BsrI ACTGG 1 cut(s) 619
BssAI RCCGGY 1 cut(s) 244
BssECI CCNNGG 3 cut(s) 18, 114, 608
BssMI GATC 4 cut(s) 24, 31, 259, 997
BssNI GRCGYC 2 cut(s) 75, 155
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 2 cut(s) 116, 609
Bst4CI ACNGT 3 cut(s) 684, 1254, 1307
Bst6I CTCTTC 2 cut(s) 206, 378
BstACI GRCGYC 2 cut(s) 75, 155
BstAPI GCANNNNNTGC 1 cut(s) 530
BstC8I GCNNGC 3 cut(s) 348, 1144, 1284
BstDEI CTNAG 8 cut(s) 377, 645, 912, 1058, 1069, 1170, 1185, 1365
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 4 cut(s) 330, 406, 418, 959
BstFNI CGCG 1 cut(s) 1045
BstHHI GCGC 4 cut(s) 904, 1045, 1282, 1334
BstKTI GATC 4 cut(s) 27, 34, 262, 1000
BstMBI GATC 4 cut(s) 24, 31, 259, 997
BstMWI GCNNNNNNNGC 5 cut(s) 250, 352, 361, 530, 1286
BstNI CCWGG 2 cut(s) 116, 609
BstNSI RCATGY 4 cut(s) 368, 396, 472, 1286
BstSCI CCNGG 2 cut(s) 114, 607
BstSFI CTRYAG 1 cut(s) 1224
BstUI CGCG 1 cut(s) 1045
BstV1I GCAGC 6 cut(s) 501, 536, 826, 829, 961, 1273
BstX2I RGATCY 1 cut(s) 24
BstYI RGATCY 1 cut(s) 24
Bsu36I CCTNAGG 1 cut(s) 1058
BsuRI GGCC 2 cut(s) 355, 604
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 4 cut(s) 330, 406, 418, 959
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 162, 303
Cac8I GCNNGC 3 cut(s) 348, 1144, 1284
CaiI CAGNNNCTG 1 cut(s) 614
CciI TCATGA 1 cut(s) 325
CfoI GCGC 4 cut(s) 904, 1045, 1282, 1334
Cfr10I RCCGGY 1 cut(s) 244
Cfr13I GGNCC 4 cut(s) 236, 602, 1025, 1062
CseI GACGC 2 cut(s) 64, 144
Csp6I GTAC 1 cut(s) 6
CviAII CATG 8 cut(s) 19, 326, 365, 393, 469, 599, 1126, 1283
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 8 cut(s) 377, 645, 912, 1058, 1069, 1170, 1185, 1365
DpnI GATC 4 cut(s) 26, 33, 261, 999
DpnII GATC 4 cut(s) 24, 31, 259, 997
Eam1104I CTCTTC 2 cut(s) 206, 378
EarI CTCTTC 2 cut(s) 206, 378
Eco130I CCWWGG 1 cut(s) 18
Eco147I AGGCCT 1 cut(s) 355
Eco24I GRGCYC 1 cut(s) 17
Eco32I GATATC 3 cut(s) 58, 677, 985
Eco47I GGWCC 3 cut(s) 236, 1025, 1062
Eco57I CTGAAG 2 cut(s) 521, 861
Eco81I CCTNAGG 1 cut(s) 1058
EcoO109I RGGNCCY 1 cut(s) 1062
EcoRI GAATTC 1 cut(s) 458
EcoRII CCWGG 2 cut(s) 114, 607
EcoRV GATATC 3 cut(s) 58, 677, 985
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 8 cut(s) 22, 329, 368, 396, 472, 602, 1129, 1286
FaqI GGGAC 2 cut(s) 625, 670
FatI CATG 8 cut(s) 18, 325, 364, 392, 468, 598, 1125, 1282
FauNDI CATATG 1 cut(s) 1018
Fnu4HI GCNGC 7 cut(s) 251, 515, 525, 840, 843, 975, 1287
FokI GGATG 4 cut(s) 317, 413, 425, 946
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 7 cut(s) 251, 515, 525, 840, 843, 975, 1287
FspBI CTAG 5 cut(s) 528, 846, 1143, 1277, 1317
FspI TGCGCA 1 cut(s) 1333
GlaI GCGC 4 cut(s) 903, 1044, 1281, 1333
GluI GCNGC 7 cut(s) 251, 515, 525, 840, 843, 975, 1287
GsuI CTGGAG 2 cut(s) 591, 655
HaeIII GGCC 2 cut(s) 355, 604
HapII CCGG 1 cut(s) 245
HgaI GACGC 2 cut(s) 64, 144
HhaI GCGC 4 cut(s) 904, 1045, 1282, 1334
Hin1I GRCGYC 2 cut(s) 75, 155
Hin1II CATG 8 cut(s) 22, 329, 368, 396, 472, 602, 1129, 1286
Hin6I GCGC 4 cut(s) 902, 1043, 1280, 1332
HinP1I GCGC 4 cut(s) 902, 1043, 1280, 1332
HindIII AAGCTT 2 cut(s) 478, 1265
HinfI GANTC 7 cut(s) 288, 322, 442, 491, 580, 881, 1174
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 907
Hpy166II GTNNAC 1 cut(s) 1250
Hpy188III TCNNGA 4 cut(s) 326, 672, 776, 1178
Hpy8I GTNNAC 1 cut(s) 1250
Hpy99I CGWCG 3 cut(s) 80, 92, 160
HpyAV CCTTC 3 cut(s) 432, 496, 885
HpyCH4III ACNGT 3 cut(s) 684, 1254, 1307
HpyCH4V TGCA 8 cut(s) 319, 364, 524, 538, 633, 707, 755, 1226
HpyF10VI GCNNNNNNNGC 5 cut(s) 250, 352, 361, 530, 1286
HpyF3I CTNAG 8 cut(s) 377, 645, 912, 1058, 1069, 1170, 1185, 1365
Hsp92I GRCGYC 2 cut(s) 75, 155
Hsp92II CATG 8 cut(s) 22, 329, 368, 396, 472, 602, 1129, 1286
HspAI GCGC 4 cut(s) 902, 1043, 1280, 1332
Kzo9I GATC 4 cut(s) 24, 31, 259, 997
LmnI GCTCC 2 cut(s) 389, 1357
Lsp1109I GCAGC 6 cut(s) 501, 536, 826, 829, 961, 1273
LweI GCATC 1 cut(s) 1171
MaeI CTAG 5 cut(s) 528, 846, 1143, 1277, 1317
MaeIII GTNAC 3 cut(s) 299, 1235, 1310
MalI GATC 4 cut(s) 26, 33, 261, 999
MbiI CCGCTC 1 cut(s) 1360
MboI GATC 4 cut(s) 24, 31, 259, 997
MboII GAAGA 3 cut(s) 223, 395, 437
MfeI CAATTG 2 cut(s) 689, 1211
MflI RGATCY 1 cut(s) 24
MhlI GDGCHC 2 cut(s) 17, 164
MluCI AATT 8 cut(s) 458, 689, 923, 948, 1092, 1135, 1157, 1211
MmeI TCCRAC 3 cut(s) 106, 987, 1055
MroXI GAANNNNTTC 1 cut(s) 441
MseI TTAA 4 cut(s) 482, 558, 666, 702
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 2 cut(s) 191, 916
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 2 cut(s) 116, 609
MunI CAATTG 2 cut(s) 689, 1211
Mva1269I GAATGC 2 cut(s) 207, 904
MvaI CCWGG 2 cut(s) 116, 609
MvnI CGCG 1 cut(s) 1045
MwoI GCNNNNNNNGC 5 cut(s) 250, 352, 361, 530, 1286
NcoI CCATGG 1 cut(s) 18
NdeI CATATG 1 cut(s) 1018
NdeII GATC 4 cut(s) 24, 31, 259, 997
NheI GCTAGC 1 cut(s) 1142
NlaIII CATG 8 cut(s) 22, 329, 368, 396, 472, 602, 1129, 1286
NlaIV GGNNCC 2 cut(s) 238, 249
NmuCI GTSAC 3 cut(s) 299, 1235, 1310
NsbI TGCGCA 1 cut(s) 1333
NspI RCATGY 4 cut(s) 368, 396, 472, 1286
PaeI GCATGC 1 cut(s) 1286
PagI TCATGA 1 cut(s) 325
PceI AGGCCT 1 cut(s) 355
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 1258
PctI GAATGC 2 cut(s) 207, 904
PdmI GAANNNNTTC 1 cut(s) 441
PfeI GAWTC 7 cut(s) 288, 322, 442, 491, 580, 881, 1174
PflFI GACNNNGTC 1 cut(s) 122
PflMI CCANNNNNTGG 1 cut(s) 614
PkrI GCNGC 7 cut(s) 252, 516, 526, 841, 844, 976, 1288
PpuMI RGGWCCY 1 cut(s) 1062
Psp5II RGGWCCY 1 cut(s) 1062
Psp6I CCWGG 2 cut(s) 114, 607
PspGI CCWGG 2 cut(s) 114, 607
PspN4I GGNNCC 2 cut(s) 238, 249
PspPI GGNCC 4 cut(s) 236, 602, 1025, 1062
PspPPI RGGWCCY 1 cut(s) 1062
PstI CTGCAG 1 cut(s) 1228
PstNI CAGNNNCTG 1 cut(s) 614
PsuI RGATCY 1 cut(s) 24
PsyI GACNNNGTC 1 cut(s) 122
PvuII CAGCTG 2 cut(s) 191, 916
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 4 cut(s) 482, 558, 666, 702
SatI GCNGC 7 cut(s) 251, 515, 525, 840, 843, 975, 1287
Sau3AI GATC 4 cut(s) 24, 31, 259, 997
Sau96I GGNCC 4 cut(s) 236, 602, 1025, 1062
ScaI AGTACT 1 cut(s) 7
ScrFI CCNGG 2 cut(s) 116, 609
SduI GDGCHC 2 cut(s) 17, 164
SfaNI GCATC 1 cut(s) 1171
SfcI CTRYAG 1 cut(s) 1224
SinI GGWCC 3 cut(s) 236, 1025, 1062
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 2 cut(s) 149, 206
SmoI CTYRAG 2 cut(s) 149, 206
SphI GCATGC 1 cut(s) 1286
Sse9I AATT 8 cut(s) 458, 689, 923, 948, 1092, 1135, 1157, 1211
SseBI AGGCCT 1 cut(s) 355
SsiI CCGC 5 cut(s) 184, 251, 517, 855, 1360
SspMI CTAG 5 cut(s) 528, 846, 1143, 1277, 1317
StuI AGGCCT 1 cut(s) 355
StyD4I CCNGG 2 cut(s) 114, 607
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 3 cut(s) 684, 1254, 1307
TaqI TCGA 3 cut(s) 158, 462, 1000
TasI AATT 8 cut(s) 458, 689, 923, 948, 1092, 1135, 1157, 1211
TatI WGTACW 1 cut(s) 5
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 7 cut(s) 288, 322, 442, 491, 580, 881, 1174
Tru1I TTAA 4 cut(s) 482, 558, 666, 702
Tru9I TTAA 4 cut(s) 482, 558, 666, 702
TscAI CASTG 2 cut(s) 169, 310
TseFI GTSAC 3 cut(s) 299, 1235, 1310
TseI GCWGC 6 cut(s) 514, 524, 839, 842, 974, 1286
Tsp45I GTSAC 3 cut(s) 299, 1235, 1310
TspDTI ATGAA 4 cut(s) 450, 504, 837, 1065
TspGWI ACGGA 2 cut(s) 650, 1254
TspRI CASTG 2 cut(s) 169, 310
Tth111I GACNNNGTC 1 cut(s) 122
Van91I CCANNNNNTGG 1 cut(s) 614
VpaK11BI GGWCC 3 cut(s) 236, 1025, 1062
XapI RAATTY 2 cut(s) 458, 1092
XceI RCATGY 4 cut(s) 368, 396, 472, 1286
XmnI GAANNNNTTC 1 cut(s) 441
XspI CTAG 5 cut(s) 528, 846, 1143, 1277, 1317
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.