Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007820

Physical Location & Seq

Genomic Coordinates Reverse (-)

14365983 .. 14369744

Gene Structure 3762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G165300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGAGTACTCCCAGTCCCATGGAGATCTCTCTGCAAAACCCTCAGGACACCGTGATTCCGGACCAAAACGGCTTCATCGCTGTAGACTCAGCTCCTTCTCCTAGTCTTCCCCAAGACAAAGTACTTGTTTCAGTTGAAGTCTCCCTCAAGCCCTCAAGCACAGCTCGGATTGACGATGTACGGTCAGCCGTTGAGAGAATGCTTGAAAAGAGGAGTTTAAGCTATACTGATGGACCTGTGCCCGTGCCGCCCGACGATCAGTTCCTGACGGAAAATGTGCAAAGAATCTGTATTTGTGACACGGATGAGTGGGTGCAGAACCATGAGATCCTTTTGTTCTGGCAAGTGAAGCCTGTTGTGCATGTTTTTCAGCTTAGCGAAGAGGGAGCATGTGAGGACGTAAGTGGCGATGGACAACCTTCTACCTTTAATGAATGGATTCTTCCTGCGAAGGAATTTGATGGGATGTGGGAAAGCTTAATTTATGAATCTGGTCTCAAGCAAAGGTTACTGCGGTATGCAGCTAGTGCGTTGCTTTTTACTGAGAAGGGTGTCAATCCTTTCCTTGTGTCATGGAATCGCATTGTTCTTTTACATGGACCTCCAGGCACTGGAAAAACCTCTTTATGTAAAGCACTGGCTCAAAAACTATCTATTCGATTTAACTCCAGATATCCACAGTGCCAATTGATTGAAGTTAATGCACATTCTTTATTCAGTAAATGGTTCTCCGAGAGTGGCAAATTGGTTGCAAAGCTTTTCCAAAAAATTCAAGAGATGGTAGAAGAGGAAAACAATCTGGTATTTGTTTTGATTGATGAAGTTGAAAGCCTCGCTGCTGCTAGAAAAGCTGCTCTATCTGGTTCTGAACCTTCAGATTCTATTCGGGTAGTGAATGCGCTGCTAACTCAGCTGGACAAGTTGAAATCAGCACCGAATGTGATAATTCTGACAACATCCAACATAACGGCTGCTATTGATATTGCGTTTGTTGATCGAGCTGATATAAAAGCATATGTCGGCCCCCCAACTCTGCAAGCGCGTTATGAAATTCTAAGGTCCTGCTTGCAGGAACTTATACGAACAGGAATTTTATCAAATTTTGAGGATTGTGAAAGCCTCATGCTTCCTAACTACGGTAGCTTGAAAGAGAAATTGAATATGCCTGAGGTTCAAGATGCCCGAACACTACACATGTGTAAACAATTGCTTGAAACAGCAGAAGCATGTGAGGGATTGAGTGGACGATCTTTAAGAAAGCTTCCATTCCTAGGGCATGCGGCTCTTGCAAGTCCTTATGGTTGCGACCCAAGCAAATTCTTGAGTACAATGATAGATACAGCTAGGAGGGAGCGTTCTGAGCTACCTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0034641 GO:0035825 GO:0042138 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

458

Amino Acids

50.77

Weight (kDa)

5.04

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24710 AT4G24710 AT4G24710 AT4G24710
fragaria_vesca	FvH4_5g06320 FvH4_5g06320 FvH4_5g06320 FvH4_5g06320 FvH4_5g06320
malus_domestica	MD06G1165600.v1.1 MD14G1171200.v1.1
prunus_persica	Prupe.5G165300_v2.0.a1
pyrus_communis	pycom06g14810 pycom14g14310
rosa_chinensis	RchiOBHm_Chr7g0192541
rosa_laevigata	RLG00000004356
rosa_multiflora	Rmu_sc0003108.1_g000039
rosa_roxburghii	Rroxscaffold_3G00262950
rosa_rugosa	Rorug07G0002100 Rorug07G0002100
rosa_samantha	Rh7BG128700 Rh7CG130500 Rh7DG130000
rosa_wichuraiana	Rw7G010870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	611
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	1 cut(s)	1042
AccIII	TCCGGA	1 cut(s)	58
AciI	CCGC	3 cut(s)	248, 514, 1280
AclWI	GGATC	1 cut(s)	322
AcsI	RAATTY	6 cut(s)	455, 768, 1050, 1089, 1099, 1316
AcuI	CTGAAG	1 cut(s)	858
AfaI	GTAC	4 cut(s)	7, 123, 180, 1327
AfiI	CCNNNNNNNGG	3 cut(s)	611, 1136, 1271
AflIII	ACRYGT	1 cut(s)	1194
AjnI	CCWGG	1 cut(s)	604
AloI	GAACNNNNNNTCC	2 cut(s)	1339, 1371
Alw26I	GTCTC	2 cut(s)	145, 500
AlwI	GGATC	1 cut(s)	322
AlwNI	CAGNNNCTG	2 cut(s)	265, 611
Aor13HI	TCCGGA	1 cut(s)	58
AoxI	GGCC	1 cut(s)	1021
ApeKI	GCWGC	6 cut(s)	521, 836, 839, 851, 901, 971
ApoI	RAATTY	6 cut(s)	455, 768, 1050, 1089, 1099, 1316
Asp700I	GAANNNNTTC	1 cut(s)	438
AspA2I	CCTAGG	1 cut(s)	1270
AspLEI	GCGC	2 cut(s)	901, 1042
AspS9I	GGNCC	5 cut(s)	61, 233, 599, 1022, 1059
AvaII	GGWCC	4 cut(s)	61, 233, 599, 1059
AvrII	CCTAGG	1 cut(s)	1270
AxyI	CCTNAGG	2 cut(s)	42, 1167
BaeGI	GKGCMC	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	98
BbvI	GCAGC	6 cut(s)	533, 823, 826, 838, 888, 958
BccI	CCATC	4 cut(s)	224, 404, 455, 772
BceAI	ACGGC	3 cut(s)	85, 173, 984
BciT130I	CCWGG	1 cut(s)	606
BcoDI	GTCTC	2 cut(s)	145, 500
BfaI	CTAG	5 cut(s)	102, 525, 843, 1271, 1344
BfmI	CTRYAG	1 cut(s)	81
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	8 cut(s)	248, 522, 837, 840, 852, 902, 972, 1281
BlnI	CCTAGG	1 cut(s)	1270
BlpI	GCTNAGC	1 cut(s)	374
BlsI	GCNGC	8 cut(s)	249, 523, 838, 841, 853, 903, 973, 1282
BmcAI	AGTACT	2 cut(s)	7, 123
Bme1390I	CCNGG	1 cut(s)	606
Bme18I	GGWCC	4 cut(s)	61, 233, 599, 1059
BmgT120I	GGNCC	5 cut(s)	61, 233, 599, 1022, 1059
BmiI	GGNNCC	1 cut(s)	1024
BmrFI	CCNGG	1 cut(s)	606
BmrI	ACTGGG	1 cut(s)	6
BmsI	GCATC	1 cut(s)	1168
BmuI	ACTGGG	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	98
BpmI	CTGGAG	2 cut(s)	588, 652
Bpu1102I	GCTNAGC	1 cut(s)	374
BpuEI	CTTGAG	4 cut(s)	131, 139, 482, 1342
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	2 cut(s)	18, 1270
BsaWI	WCCGGW	1 cut(s)	58
BsaXI	ACNNNNNCTCC	2 cut(s)	1339, 1369
Bsc4I	CCNNNNNNNGG	3 cut(s)	611, 1136, 1271
Bse1I	ACTGG	3 cut(s)	12, 616, 642
Bse21I	CCTNAGG	2 cut(s)	42, 1167
BseAI	TCCGGA	1 cut(s)	58
BseBI	CCWGG	1 cut(s)	606
BseDI	CCNNGG	2 cut(s)	18, 1270
BseGI	GGATG	3 cut(s)	310, 471, 956
BseLI	CCNNNNNNNGG	3 cut(s)	611, 1136, 1271
BseMII	CTCAG	6 cut(s)	56, 102, 534, 923, 1158, 1350
BseNI	ACTGG	3 cut(s)	12, 616, 642
BseRI	GAGGAG	1 cut(s)	226
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	6 cut(s)	533, 823, 826, 838, 888, 958
BsgI	GTGCAG	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	1042
BshFI	GGCC	1 cut(s)	1023
BsiSI	CCGG	1 cut(s)	59
BslI	CCNNNNNNNGG	3 cut(s)	611, 1136, 1271
BsmAI	GTCTC	2 cut(s)	145, 500
BsmI	GAATGC	2 cut(s)	204, 901
BsnI	GGCC	1 cut(s)	1023
Bso31I	GGTCTC	1 cut(s)	500
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp13I	TCCGGA	1 cut(s)	58
Bsp143I	GATC	5 cut(s)	24, 256, 327, 994, 1247
Bsp1720I	GCTNAGC	1 cut(s)	374
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	3 cut(s)	248, 514, 1280
BspANI	GGCC	1 cut(s)	1023
BspCNI	CTCAG	6 cut(s)	55, 101, 535, 922, 1159, 1351
BspEI	TCCGGA	1 cut(s)	58
BspFNI	CGCG	1 cut(s)	1042
BspLI	GGNNCC	1 cut(s)	1024
BspPI	GGATC	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	500
BsrI	ACTGG	3 cut(s)	12, 616, 642
BssECI	CCNNGG	2 cut(s)	18, 1270
BssMI	GATC	5 cut(s)	24, 256, 327, 994, 1247
BssT1I	CCWWGG	2 cut(s)	18, 1270
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	4 cut(s)	52, 183, 681, 1139
Bst6I	CTCTTC	2 cut(s)	375, 780
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstC8I	GCNNGC	3 cut(s)	1038, 1067, 1278
BstDEI	CTNAG	8 cut(s)	42, 88, 374, 543, 909, 1055, 1167, 1359
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	3 cut(s)	310, 471, 956
BstFNI	CGCG	1 cut(s)	1042
BstHHI	GCGC	2 cut(s)	901, 1042
BstKTI	GATC	5 cut(s)	27, 259, 330, 997, 1250
BstMAI	GTCTC	2 cut(s)	145, 500
BstMBI	GATC	5 cut(s)	24, 256, 327, 994, 1247
BstMWI	GCNNNNNNNGC	9 cut(s)	247, 349, 358, 527, 848, 910, 1286, 1311, 1360
BstNI	CCWGG	1 cut(s)	606
BstNSI	RCATGY	5 cut(s)	365, 393, 1198, 1230, 1280
BstSCI	CCNGG	1 cut(s)	604
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	243
BstUI	CGCG	1 cut(s)	1042
BstV1I	GCAGC	6 cut(s)	533, 823, 826, 838, 888, 958
BstV2I	GAAGAC	1 cut(s)	98
BstX2I	RGATCY	2 cut(s)	24, 327
BstXI	CCANNNNNNTGG	1 cut(s)	19
BstYI	RGATCY	2 cut(s)	24, 327
Bsu36I	CCTNAGG	2 cut(s)	42, 1167
BsuRI	GGCC	1 cut(s)	1023
BtgI	CCRYGG	1 cut(s)	18
BtgZI	GCGATG	2 cut(s)	61, 423
BtsCI	GGATG	3 cut(s)	310, 471, 956
BtsIMutI	CAGTG	3 cut(s)	609, 635, 686
Cac8I	GCNNGC	3 cut(s)	1038, 1067, 1278
CaiI	CAGNNNCTG	2 cut(s)	265, 611
CfoI	GCGC	2 cut(s)	901, 1042
Cfr13I	GGNCC	5 cut(s)	61, 233, 599, 1022, 1059
Csp6I	GTAC	4 cut(s)	6, 122, 179, 1326
CviQI	GTAC	4 cut(s)	6, 122, 179, 1326
DdeI	CTNAG	8 cut(s)	42, 88, 374, 543, 909, 1055, 1167, 1359
DpnI	GATC	5 cut(s)	26, 258, 329, 996, 1249
DpnII	GATC	5 cut(s)	24, 256, 327, 994, 1247
Eam1104I	CTCTTC	2 cut(s)	375, 780
EarI	CTCTTC	2 cut(s)	375, 780
Eco130I	CCWWGG	2 cut(s)	18, 1270
Eco31I	GGTCTC	1 cut(s)	500
Eco32I	GATATC	1 cut(s)	674
Eco47I	GGWCC	4 cut(s)	61, 233, 599, 1059
Eco57I	CTGAAG	1 cut(s)	858
Eco81I	CCTNAGG	2 cut(s)	42, 1167
EcoO109I	RGGNCCY	1 cut(s)	1059
EcoRII	CCWGG	1 cut(s)	604
EcoRV	GATATC	1 cut(s)	674
EcoT14I	CCWWGG	2 cut(s)	18, 1270
ErhI	CCWWGG	2 cut(s)	18, 1270
FauNDI	CATATG	1 cut(s)	1015
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	8 cut(s)	248, 522, 837, 840, 852, 902, 972, 1281
FokI	GGATG	3 cut(s)	317, 478, 943
Fsp4HI	GCNGC	8 cut(s)	248, 522, 837, 840, 852, 902, 972, 1281
FspBI	CTAG	5 cut(s)	102, 525, 843, 1271, 1344
GlaI	GCGC	2 cut(s)	900, 1041
GluI	GCNGC	8 cut(s)	248, 522, 837, 840, 852, 902, 972, 1281
GsuI	CTGGAG	2 cut(s)	588, 652
HaeIII	GGCC	1 cut(s)	1023
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	2 cut(s)	901, 1042
Hin6I	GCGC	2 cut(s)	899, 1040
HinP1I	GCGC	2 cut(s)	899, 1040
HindIII	AAGCTT	3 cut(s)	475, 755, 1259
HinfI	GANTC	7 cut(s)	55, 86, 285, 439, 488, 577, 878
HpaII	CCGG	1 cut(s)	59
Hpy166II	GTNNAC	3 cut(s)	85, 1202, 1244
Hpy188I	TCNGA	6 cut(s)	168, 733, 868, 877, 951, 1360
Hpy188III	TCNNGA	7 cut(s)	44, 59, 265, 669, 773, 1175, 1321
Hpy8I	GTNNAC	3 cut(s)	85, 1202, 1244
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	5 cut(s)	105, 429, 445, 541, 882
HpyCH4III	ACNGT	4 cut(s)	52, 183, 681, 1139
HpyCH4IV	ACGT	1 cut(s)	399
HpyF10VI	GCNNNNNNNGC	9 cut(s)	247, 349, 358, 527, 848, 910, 1286, 1311, 1360
HpyF3I	CTNAG	8 cut(s)	42, 88, 374, 543, 909, 1055, 1167, 1359
HpySE526I	ACGT	1 cut(s)	399
HspAI	GCGC	2 cut(s)	899, 1040
Kpn2I	TCCGGA	1 cut(s)	58
Kzo9I	GATC	5 cut(s)	24, 256, 327, 994, 1247
LmnI	GCTCC	3 cut(s)	97, 386, 1351
Lsp1109I	GCAGC	6 cut(s)	533, 823, 826, 838, 888, 958
LweI	GCATC	1 cut(s)	1168
MaeI	CTAG	5 cut(s)	102, 525, 843, 1271, 1344
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	296, 507
MalI	GATC	5 cut(s)	26, 258, 329, 996, 1249
MboI	GATC	5 cut(s)	24, 256, 327, 994, 1247
MboII	GAAGA	4 cut(s)	98, 392, 434, 797
MfeI	CAATTG	2 cut(s)	686, 1205
MflI	RGATCY	2 cut(s)	24, 327
MhlI	GDGCHC	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	984
MroI	TCCGGA	1 cut(s)	58
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	6 cut(s)	218, 429, 479, 663, 699, 1253
MspA1I	CMGCKG	1 cut(s)	913
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	606
MunI	CAATTG	2 cut(s)	686, 1205
Mva1269I	GAATGC	2 cut(s)	204, 901
MvaI	CCWGG	1 cut(s)	606
MvnI	CGCG	1 cut(s)	1042
MwoI	GCNNNNNNNGC	9 cut(s)	247, 349, 358, 527, 848, 910, 1286, 1311, 1360
NcoI	CCATGG	1 cut(s)	18
NdeI	CATATG	1 cut(s)	1015
NdeII	GATC	5 cut(s)	24, 256, 327, 994, 1247
NlaIV	GGNNCC	1 cut(s)	1024
NmuCI	GTSAC	1 cut(s)	296
NspI	RCATGY	5 cut(s)	365, 393, 1198, 1230, 1280
PaeI	GCATGC	1 cut(s)	1280
PciI	ACATGT	1 cut(s)	1194
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PctI	GAATGC	2 cut(s)	204, 901
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	6 cut(s)	55, 285, 439, 488, 577, 878
PflMI	CCANNNNNTGG	1 cut(s)	611
PkrI	GCNGC	8 cut(s)	249, 523, 838, 841, 853, 903, 973, 1282
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PpuMI	RGGWCCY	1 cut(s)	1059
PscI	ACATGT	1 cut(s)	1194
Psp5II	RGGWCCY	1 cut(s)	1059
Psp6I	CCWGG	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	1 cut(s)	1024
PspPI	GGNCC	5 cut(s)	61, 233, 599, 1022, 1059
PspPPI	RGGWCCY	1 cut(s)	1059
PstNI	CAGNNNCTG	2 cut(s)	265, 611
PsuI	RGATCY	2 cut(s)	24, 327
PvuII	CAGCTG	1 cut(s)	913
RsaI	GTAC	4 cut(s)	7, 123, 180, 1327
RsaNI	GTAC	4 cut(s)	6, 122, 179, 1326
SaqAI	TTAA	6 cut(s)	218, 429, 479, 663, 699, 1253
SatI	GCNGC	8 cut(s)	248, 522, 837, 840, 852, 902, 972, 1281
Sau3AI	GATC	5 cut(s)	24, 256, 327, 994, 1247
Sau96I	GGNCC	5 cut(s)	61, 233, 599, 1022, 1059
ScaI	AGTACT	2 cut(s)	7, 123
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	606
SduI	GDGCHC	1 cut(s)	243
SfaNI	GCATC	1 cut(s)	1168
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	4 cut(s)	61, 233, 599, 1059
SmlI	CTYRAG	4 cut(s)	146, 154, 497, 1321
SmoI	CTYRAG	4 cut(s)	146, 154, 497, 1321
SphI	GCATGC	1 cut(s)	1280
SsiI	CCGC	3 cut(s)	248, 514, 1280
SspMI	CTAG	5 cut(s)	102, 525, 843, 1271, 1344
StyD4I	CCNGG	1 cut(s)	604
StyI	CCWWGG	2 cut(s)	18, 1270
TaaI	ACNGT	4 cut(s)	52, 183, 681, 1139
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	2 cut(s)	658, 997
TatI	WGTACW	3 cut(s)	5, 121, 1325
TauI	GCSGC	2 cut(s)	250, 1283
TfiI	GAWTC	6 cut(s)	55, 285, 439, 488, 577, 878
Tru1I	TTAA	6 cut(s)	218, 429, 479, 663, 699, 1253
Tru9I	TTAA	6 cut(s)	218, 429, 479, 663, 699, 1253
TscAI	CASTG	3 cut(s)	616, 642, 686
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	6 cut(s)	521, 836, 839, 851, 901, 971
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	5 cut(s)	64, 447, 501, 834, 1062
TspGWI	ACGGA	2 cut(s)	284, 317
TspRI	CASTG	3 cut(s)	616, 642, 686
Van91I	CCANNNNNTGG	1 cut(s)	611
VpaK11BI	GGWCC	4 cut(s)	61, 233, 599, 1059
XapI	RAATTY	6 cut(s)	455, 768, 1050, 1089, 1099, 1316
XceI	RCATGY	5 cut(s)	365, 393, 1198, 1230, 1280
XmaJI	CCTAGG	1 cut(s)	1270
XmiI	GTMKAC	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	5 cut(s)	102, 525, 843, 1271, 1344
ZrmI	AGTACT	2 cut(s)	7, 123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.