Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007820

Physical Location & Seq

Genomic Coordinates Reverse (-)

10278731 .. 10282931

Gene Structure 4201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG130500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAGTGCTCCGAGTCCAATGGAGATCTACGTGCAAAACCCCCAACACGCCGATATCCCAGACCAAAACGGCGCCGTCCAAGTCGTCGCTTCAACTCCTTCTCCTATCATTCCCCAGGACAAAGTCCTCGTTTCAGTTGAGGTTTGCCTCAAGCCGTCGAGCACTGCTCGGATTGACGATGTGCGGTCAGCTGTTGAGAGAATGCTTGAGAAGAGGAGTTTGAGCTATACTGATGGACCTGTGCCGGTGCCGTCTGATGATCTGTTCCTGACTCAAAATGTGGAAAGAATCTGTATTTGTGACACCGATGAGTGGCTGCAGAATCACGACATCCTTTTGTTCTGGCAAGCGAGACCTGTTGTGCATGTGTTTCAGCTTAGCGAAGAGGGAGCATGTGAGGATGTAAGTGGGGAAGGACAATCTTCTACCTTCAATGAATGGATTCTTCCAGCAAAGGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGGCTGAAGCAAAGGTTGCTTCGGTACGCGGCTAGTGCATTACATTTTACTGAAAAGGGTGTTAATCCTTTCCTTGTGTCATGGAATCGCATTGTTCTTTTACATGGGCCTCCAGGGACTGGAAAAACCTCTTTATGTAAAGCATTGGCTCAGAAGCTATCCATCCGATTTAACTCCAGATACCCGCAGTCCCAATTGATTGAAGTTAATGCACATTCTCTATTCAGCAAATGGTTCTCTGAAAGTGGCAAGTTGGTTGCAAAGCTTTTCCAAAAAATTCAAGAGATGGTAGAGGAGGAAACCAATCTGGTATTTGTTTTGATTGATGAAGTTGAAAGCCTTGCTGCTGCGAGAAAATCCGCTTTATCTGGTTCTGAACCTTCAGATTCTATTCGGGTGGTGAATGCGCTACTAACTCAGCTGGACAAACTGAAATCAGCACCAAATGTGATAATTTTAACAACATCCAACATAACTGCTGCTATTGGTAAGACTGCAGTCACTTTCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0034641 GO:0035825 GO:0042138 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

335

Amino Acids

37.07

Weight (kDa)

5.19

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRIP13_N	PF23563	40 - 129	3.4e-30	TRIP13 N-terminal domain
AAA_16	PF13191	195 - 316	1.1e-07	AAA ATPase domain
AAA_22	PF13401	195 - 288	2.2e-07	AAA domain
AAA	PF00004	197 - 324	9.9e-25	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24710 AT4G24710 AT4G24710 AT4G24710
fragaria_vesca	FvH4_5g06320 FvH4_5g06320 FvH4_5g06320 FvH4_5g06320 FvH4_5g06320
malus_domestica	MD06G1165600.v1.1 MD14G1171200.v1.1
prunus_persica	Prupe.5G165300_v2.0.a1
pyrus_communis	pycom06g14810 pycom14g14310
rosa_chinensis	RchiOBHm_Chr7g0192541
rosa_laevigata	RLG00000004356
rosa_multiflora	Rmu_sc0003108.1_g000039
rosa_roxburghii	Rroxscaffold_3G00262950
rosa_rugosa	Rorug07G0002100 Rorug07G0002100
rosa_samantha	Rh7BG128700 Rh7CG130500 Rh7DG130000
rosa_wichuraiana	Rw7G010870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1006
AccB1I	GGYRCC	2 cut(s)	71, 247
AccB7I	CCANNNNNTGG	1 cut(s)	614
AccII	CGCG	1 cut(s)	524
AciI	CCGC	4 cut(s)	184, 524, 680, 855
AcsI	RAATTY	2 cut(s)	458, 771
AcuI	CTGAAG	2 cut(s)	521, 861
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	2 cut(s)	312, 614
AgsI	TTSAA	5 cut(s)	93, 433, 698, 776, 830
AjnI	CCWGG	2 cut(s)	114, 607
AluBI	AGCT	7 cut(s)	191, 225, 376, 480, 652, 760, 916
AluI	AGCT	7 cut(s)	191, 225, 376, 480, 652, 760, 916
Alw21I	GWGCWC	2 cut(s)	10, 164
Alw26I	GTCTC	1 cut(s)	346
AlwNI	CAGNNNCTG	1 cut(s)	614
AoxI	GGCC	1 cut(s)	602
ApeKI	GCWGC	4 cut(s)	316, 839, 842, 974
ApoI	RAATTY	2 cut(s)	458, 771
Asp700I	GAANNNNTTC	1 cut(s)	441
AspLEI	GCGC	2 cut(s)	74, 904
AspS9I	GGNCC	2 cut(s)	236, 602
AsuHPI	GGTGA	1 cut(s)	907
AvaII	GGWCC	1 cut(s)	236
BanI	GGYRCC	2 cut(s)	71, 247
Bbv12I	GWGCWC	2 cut(s)	10, 164
BbvI	GCAGC	4 cut(s)	303, 826, 829, 961
BccI	CCATC	4 cut(s)	227, 458, 665, 775
BceAI	ACGGC	4 cut(s)	59, 85, 139, 235
BciT130I	CCWGG	2 cut(s)	116, 609
BcoDI	GTCTC	1 cut(s)	346
BfaI	CTAG	1 cut(s)	528
BfmI	CTRYAG	2 cut(s)	317, 990
BfoI	RGCGCY	1 cut(s)	75
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	5 cut(s)	317, 525, 840, 843, 975
BlpI	GCTNAGC	1 cut(s)	377
BlsI	GCNGC	5 cut(s)	318, 526, 841, 844, 976
Bme1390I	CCNGG	2 cut(s)	116, 609
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	2 cut(s)	236, 602
BmiI	GGNNCC	2 cut(s)	73, 249
BmrFI	CCNGG	2 cut(s)	116, 609
BoxI	GACNNNNGTC	1 cut(s)	992
BplI	GAGNNNNNCTC	2 cut(s)	151, 183
BpmI	CTGGAG	2 cut(s)	591, 655
Bpu1102I	GCTNAGC	1 cut(s)	377
BpuEI	CTTGAG	2 cut(s)	134, 227
BsaAI	YACGTR	1 cut(s)	31
BsaHI	GRCGYC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	114, 608
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bsc4I	CCNNNNNNNGG	2 cut(s)	312, 614
Bse118I	RCCGGY	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	619
BseBI	CCWGG	2 cut(s)	116, 609
BseDI	CCNNGG	2 cut(s)	114, 608
BseGI	GGATG	4 cut(s)	330, 406, 657, 959
BseLI	CCNNNNNNNGG	2 cut(s)	312, 614
BseMII	CTCAG	2 cut(s)	659, 926
BseNI	ACTGG	1 cut(s)	619
BseRI	GAGGAG	2 cut(s)	229, 803
BseXI	GCAGC	4 cut(s)	303, 826, 829, 961
Bsh1236I	CGCG	1 cut(s)	524
BshFI	GGCC	1 cut(s)	604
BshNI	GGYRCC	2 cut(s)	71, 247
BsiHKAI	GWGCWC	2 cut(s)	10, 164
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	2 cut(s)	625, 670
BslI	CCNNNNNNNGG	2 cut(s)	312, 614
BsmAI	GTCTC	1 cut(s)	346
BsmFI	GGGAC	2 cut(s)	625, 670
BsmI	GAATGC	2 cut(s)	207, 904
BsnI	GGCC	1 cut(s)	604
Bso31I	GGTCTC	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	10, 164
Bsp143I	GATC	2 cut(s)	24, 259
Bsp1720I	GCTNAGC	1 cut(s)	377
BspACI	CCGC	4 cut(s)	184, 524, 680, 855
BspANI	GGCC	1 cut(s)	604
BspCNI	CTCAG	2 cut(s)	658, 925
BspFNI	CGCG	1 cut(s)	524
BspLI	GGNNCC	2 cut(s)	73, 249
BspMAI	CTGCAG	2 cut(s)	321, 994
BspT107I	GGYRCC	2 cut(s)	71, 247
BspTNI	GGTCTC	1 cut(s)	346
BsrFI	RCCGGY	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	619
BssAI	RCCGGY	1 cut(s)	244
BssECI	CCNNGG	2 cut(s)	114, 608
BssMI	GATC	2 cut(s)	24, 259
BssNI	GRCGYC	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	116, 609
Bst6I	CTCTTC	2 cut(s)	206, 378
BstACI	GRCGYC	1 cut(s)	72
BstAPI	GCANNNNNTGC	1 cut(s)	511
BstBAI	YACGTR	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	3 cut(s)	377, 645, 912
BstF5I	GGATG	4 cut(s)	330, 406, 657, 959
BstFNI	CGCG	1 cut(s)	524
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 904
BstKTI	GATC	2 cut(s)	27, 262
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	2 cut(s)	24, 259
BstMWI	GCNNNNNNNGC	2 cut(s)	511, 530
BstNI	CCWGG	2 cut(s)	116, 609
BstNSI	RCATGY	3 cut(s)	368, 396, 472
BstPAI	GACNNNNGTC	1 cut(s)	992
BstSCI	CCNGG	2 cut(s)	114, 607
BstSFI	CTRYAG	2 cut(s)	317, 990
BstUI	CGCG	1 cut(s)	524
BstV1I	GCAGC	4 cut(s)	303, 826, 829, 961
BstX2I	RGATCY	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	604
BtsCI	GGATG	4 cut(s)	330, 406, 657, 959
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	348
CaiI	CAGNNNCTG	1 cut(s)	614
CfoI	GCGC	2 cut(s)	74, 904
Cfr10I	RCCGGY	1 cut(s)	244
Cfr13I	GGNCC	2 cut(s)	236, 602
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	5 cut(s)	365, 393, 469, 576, 599
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	3 cut(s)	377, 645, 912
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	2 cut(s)	26, 261
DpnII	GATC	2 cut(s)	24, 259
Eam1104I	CTCTTC	2 cut(s)	206, 378
EarI	CTCTTC	2 cut(s)	206, 378
Eco31I	GGTCTC	1 cut(s)	346
Eco32I	GATATC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	236
Eco57I	CTGAAG	2 cut(s)	521, 861
EcoRII	CCWGG	2 cut(s)	114, 607
EcoRV	GATATC	1 cut(s)	55
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
FaeI	CATG	5 cut(s)	368, 396, 472, 579, 602
FaqI	GGGAC	2 cut(s)	625, 670
FatI	CATG	5 cut(s)	364, 392, 468, 575, 598
FauI	CCCGC	1 cut(s)	687
Fnu4HI	GCNGC	5 cut(s)	317, 525, 840, 843, 975
FokI	GGATG	4 cut(s)	317, 413, 644, 946
Fsp4HI	GCNGC	5 cut(s)	317, 525, 840, 843, 975
FspBI	CTAG	1 cut(s)	528
GlaI	GCGC	2 cut(s)	73, 903
GluI	GCNGC	5 cut(s)	317, 525, 840, 843, 975
GsuI	CTGGAG	2 cut(s)	591, 655
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	604
HapII	CCGG	1 cut(s)	245
HhaI	GCGC	2 cut(s)	74, 904
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	5 cut(s)	368, 396, 472, 579, 602
Hin6I	GCGC	2 cut(s)	72, 902
HinP1I	GCGC	2 cut(s)	72, 902
HindIII	AAGCTT	2 cut(s)	478, 758
HinfI	GANTC	8 cut(s)	13, 271, 288, 322, 442, 491, 580, 881
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	907
Hpy188I	TCNGA	8 cut(s)	12, 171, 256, 648, 662, 736, 871, 880
Hpy188III	TCNNGA	4 cut(s)	268, 326, 672, 776
Hpy99I	CGWCG	2 cut(s)	89, 160
HpyAV	CCTTC	4 cut(s)	108, 407, 439, 885
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	7 cut(s)	34, 319, 364, 533, 707, 755, 992
HpyF10VI	GCNNNNNNNGC	2 cut(s)	511, 530
HpyF3I	CTNAG	3 cut(s)	377, 645, 912
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	5 cut(s)	368, 396, 472, 579, 602
HspAI	GCGC	2 cut(s)	72, 902
KasI	GGCGCC	1 cut(s)	71
Kzo9I	GATC	2 cut(s)	24, 259
LmnI	GCTCC	2 cut(s)	13, 389
Lsp1109I	GCAGC	4 cut(s)	303, 826, 829, 961
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	299, 994
MalI	GATC	2 cut(s)	26, 261
MboI	GATC	2 cut(s)	24, 259
MboII	GAAGA	4 cut(s)	223, 395, 414, 437
MfeI	CAATTG	1 cut(s)	689
MflI	RGATCY	1 cut(s)	24
MhlI	GDGCHC	2 cut(s)	10, 164
MluCI	AATT	4 cut(s)	458, 689, 771, 948
Mly113I	GGCGCC	1 cut(s)	72
MlyI	GAGTC	2 cut(s)	22, 265
MmeI	TCCRAC	1 cut(s)	987
MroXI	GAANNNNTTC	1 cut(s)	441
MseI	TTAA	5 cut(s)	482, 558, 666, 702, 953
MspA1I	CMGCKG	2 cut(s)	191, 916
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	2 cut(s)	116, 609
MunI	CAATTG	1 cut(s)	689
Mva1269I	GAATGC	2 cut(s)	207, 904
MvaI	CCWGG	2 cut(s)	116, 609
MvnI	CGCG	1 cut(s)	524
MwoI	GCNNNNNNNGC	2 cut(s)	511, 530
NarI	GGCGCC	1 cut(s)	72
NdeII	GATC	2 cut(s)	24, 259
NlaIII	CATG	5 cut(s)	368, 396, 472, 579, 602
NlaIV	GGNNCC	2 cut(s)	73, 249
NmuCI	GTSAC	2 cut(s)	299, 994
NspI	RCATGY	3 cut(s)	368, 396, 472
PctI	GAATGC	2 cut(s)	207, 904
PdmI	GAANNNNTTC	1 cut(s)	441
PfeI	GAWTC	6 cut(s)	288, 322, 442, 491, 580, 881
PflFI	GACNNNGTC	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	614
PkrI	GCNGC	5 cut(s)	318, 526, 841, 844, 976
PleI	GAGTC	2 cut(s)	21, 265
PluTI	GGCGCC	1 cut(s)	75
PpsI	GAGTC	2 cut(s)	21, 265
Ppu21I	YACGTR	1 cut(s)	31
PshAI	GACNNNNGTC	1 cut(s)	992
PsiI	TTATAA	1 cut(s)	1006
Psp6I	CCWGG	2 cut(s)	114, 607
PspGI	CCWGG	2 cut(s)	114, 607
PspN4I	GGNNCC	2 cut(s)	73, 249
PspPI	GGNCC	2 cut(s)	236, 602
PstI	CTGCAG	2 cut(s)	321, 994
PstNI	CAGNNNCTG	1 cut(s)	614
PsuI	RGATCY	1 cut(s)	24
PsyI	GACNNNGTC	1 cut(s)	122
PvuII	CAGCTG	2 cut(s)	191, 916
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
SaqAI	TTAA	5 cut(s)	482, 558, 666, 702, 953
SatI	GCNGC	5 cut(s)	317, 525, 840, 843, 975
Sau3AI	GATC	2 cut(s)	24, 259
Sau96I	GGNCC	2 cut(s)	236, 602
SchI	GAGTC	2 cut(s)	22, 265
ScrFI	CCNGG	2 cut(s)	116, 609
SduI	GDGCHC	2 cut(s)	10, 164
SfcI	CTRYAG	2 cut(s)	317, 990
SfoI	GGCGCC	1 cut(s)	73
SinI	GGWCC	1 cut(s)	236
SmlI	CTYRAG	2 cut(s)	149, 206
SmoI	CTYRAG	2 cut(s)	149, 206
Sse9I	AATT	4 cut(s)	458, 689, 771, 948
SsiI	CCGC	4 cut(s)	184, 524, 680, 855
SspDI	GGCGCC	1 cut(s)	71
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	2 cut(s)	114, 607
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	158
TasI	AATT	4 cut(s)	458, 689, 771, 948
TauI	GCSGC	1 cut(s)	527
TfiI	GAWTC	6 cut(s)	288, 322, 442, 491, 580, 881
Tru1I	TTAA	5 cut(s)	482, 558, 666, 702, 953
Tru9I	TTAA	5 cut(s)	482, 558, 666, 702, 953
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	2 cut(s)	299, 994
TseI	GCWGC	4 cut(s)	316, 839, 842, 974
Tsp45I	GTSAC	2 cut(s)	299, 994
TspDTI	ATGAA	3 cut(s)	450, 504, 837
TspRI	CASTG	1 cut(s)	169
Tth111I	GACNNNGTC	1 cut(s)	122
Van91I	CCANNNNNTGG	1 cut(s)	614
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	2 cut(s)	458, 771
XceI	RCATGY	3 cut(s)	368, 396, 472
XmnI	GAANNNNTTC	1 cut(s)	441
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.