AT4G26980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014051
Physical Location & Seq
Reverse (-)
13548546 .. 13550722
2177 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26980.1

Sequence Viewer

Length: 1032 bp
ATGGAAGAAAAGCTGCCAAAATCGCTCAAGAATCTCGATTTGAATACGAATCGTGGTCGTGGACCAGAGAATAAGATTCTTGTTTCAGCTTATGTATCTTCGTCACGAATGTCTCCACTGAAATCAAAACCTCCATCTCTTGTGAGCTCATGTCTTGGTGTTATTGGGAAGCATTTGGAGGATATGATTCGTTGTTTAGCTGAAATCTCTGTTATATTTCCTGCAGACATCAAGATGTCGATTGCAGCAATTGCTAGAAGAAAAAAGCTGCTGGATGATGATGTGATTATCTGTTTGGCTGACAGTTCCTGGGAAATTCTAGATGTTAGCGGTTCAGATGTTACGAATTTTGGCTTAGCTAAAGTGGCAGAAATCTGCAAATCTCTCCGAGCTGTGGACATTAGCCGGTGCAACAAAATCTCATCCATGGGCGTCTTAGAGCTTGTACAACACTGCAGATCATTGGAGACTCTTAGATGCGGGGGATGCCCAAGCAGTGAGTCCACGGCACGCAGATCTTTGAGTATTTTTAAGCCAAACTTGAGTAATGTTGAAGGAGAAACATGGGAAGAAATAGACACTTCAGAGATTGGCCATGGTGGTCAATCATTGCGTTGGCTTGTTTGGCCACGAATTGATAAGGATTCACTGGAGATGTTATCCTCGGAGTGTCCAAGAATAGTGGTAAATCCCAAGCCATCACTTGTCGCGTACAGAGCAGACGAGGTTCCTCGAGAAGCACTACCAGATGTTGCACTGGACGAACCATTTGTCAAAGATATTGATCCTAAGACGTGGGTTGTTACTGGAGTTGTGCAGAAGCCCACATCTTTCCCGTTAAGCAATGAACTGTCAATAGCAGAGAAGTTCAGACTAGCATTTGCAGAGAGAGATGCAAGAATGGCCCCTAAACGTGCAAAGAATGCAAGGCAACGTCAACGTCGTGCTGAGAGGGATTGGATGATGTCAAGCGACGAAGCCAAAGCAATGGTTTTTGCATCAAAGGCTACCAGATCTTTGCACAAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

343

Amino Acids

38.12

Weight (kDa)

8.79

Isoelectric Point (pI)

52.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26980
fragaria_vesca FvH4_3g22820
malus_domestica MD11G1217200.v1.1
prunus_persica Prupe.4G214500_v2.0.a1
pyrus_communis pycom11g19110
rosa_chinensis RchiOBHm_Chr5g0040061
rosa_laevigata RLG00000033953
rosa_multiflora Rmu_sc0000103.1_g000059 Rmu_sc0000247.1_g000015
rosa_roxburghii Rroxscaffold_1G00041220
rosa_rugosa Rorug05G0183100
rosa_samantha Rh5AG269600 Rh5BG273300 Rh5CG306200 Rh5DG257100 Rh5DG281400
rosa_wichuraiana Rw5G025220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 710
AciI CCGC 2 cut(s) 330, 480
AclWI GGATC 1 cut(s) 779
AcoI YGGCCR 2 cut(s) 592, 626
AcsI RAATTY 2 cut(s) 315, 346
AcuI CTGAAG 1 cut(s) 567
AcyI GRCGYC 1 cut(s) 432
AfaI GTAC 2 cut(s) 447, 713
AfiI CCNNNNNNNGG 1 cut(s) 394
AgsI TTSAA 2 cut(s) 43, 554
AjiI CACGTC 1 cut(s) 795
AjnI CCWGG 1 cut(s) 308
AluBI AGCT 8 cut(s) 13, 89, 147, 200, 268, 359, 392, 442
AluI AGCT 8 cut(s) 13, 89, 147, 200, 268, 359, 392, 442
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 2 cut(s) 117, 461
AlwI GGATC 1 cut(s) 779
AlwNI CAGNNNCTG 1 cut(s) 309
Ama87I CYCGRG 1 cut(s) 732
AoxI GGCC 3 cut(s) 592, 626, 903
ApeKI GCWGC 3 cut(s) 13, 245, 268
ApoI RAATTY 2 cut(s) 315, 346
ArsI GACNNNNNNTTYG 4 cut(s) 752, 756, 784, 788
AspS9I GGNCC 2 cut(s) 62, 904
AvaI CYCGRG 1 cut(s) 732
AvaII GGWCC 1 cut(s) 62
BalI TGGCCA 2 cut(s) 594, 628
BanII GRGCYC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 2 cut(s) 255, 257
BccI CCATC 2 cut(s) 142, 706
BceAI ACGGC 1 cut(s) 522
BciT130I CCWGG 1 cut(s) 310
BcoDI GTCTC 2 cut(s) 117, 461
BfaI CTAG 3 cut(s) 255, 320, 875
BfmI CTRYAG 2 cut(s) 222, 454
BglII AGATCT 2 cut(s) 515, 1013
BisI GCNGC 3 cut(s) 14, 246, 269
BlpI GCTNAGC 1 cut(s) 355
BlsI GCNGC 3 cut(s) 15, 247, 270
Bme1390I CCNGG 1 cut(s) 310
Bme18I GGWCC 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 732
BmgBI CACGTC 1 cut(s) 795
BmgT120I GGNCC 2 cut(s) 62, 904
BmiI GGNNCC 2 cut(s) 729, 906
BmrFI CCNGG 1 cut(s) 310
BmsI GCATC 4 cut(s) 467, 476, 883, 1007
BpmI CTGGAG 2 cut(s) 671, 828
Bpu1102I GCTNAGC 1 cut(s) 355
BpuEI CTTGAG 2 cut(s) 11, 562
BsaBI GATNNNNATC 1 cut(s) 783
BsaHI GRCGYC 1 cut(s) 432
BsaJI CCNNGG 5 cut(s) 309, 426, 504, 595, 663
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse118I RCCGGY 1 cut(s) 405
Bse1I ACTGG 3 cut(s) 654, 762, 811
Bse3DI GCAATG 3 cut(s) 608, 850, 993
Bse8I GATNNNNATC 1 cut(s) 783
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 5 cut(s) 309, 426, 504, 595, 663
BseGI GGATG 4 cut(s) 280, 422, 491, 966
BseJI GATNNNNATC 1 cut(s) 783
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMI GCAATG 3 cut(s) 608, 850, 993
BseMII CTCAG 1 cut(s) 939
BseNI ACTGG 3 cut(s) 654, 762, 811
BseXI GCAGC 2 cut(s) 255, 257
BsgI GTGCAG 1 cut(s) 836
Bsh1236I CGCG 1 cut(s) 710
BshFI GGCC 3 cut(s) 594, 628, 905
BsiHKAI GWGCWC 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 732
BsiSI CCGG 1 cut(s) 406
BslI CCNNNNNNNGG 1 cut(s) 394
BsmAI GTCTC 2 cut(s) 117, 461
BsmI GAATGC 1 cut(s) 928
BsnI GGCC 3 cut(s) 594, 628, 905
BsoBI CYCGRG 1 cut(s) 732
Bsp1286I GDGCHC 1 cut(s) 149
Bsp1407I TGTACA 1 cut(s) 445
Bsp143I GATC 4 cut(s) 458, 515, 784, 1013
Bsp1720I GCTNAGC 1 cut(s) 355
Bsp19I CCATGG 2 cut(s) 426, 595
BspACI CCGC 2 cut(s) 330, 480
BspANI GGCC 3 cut(s) 594, 628, 905
BspCNI CTCAG 1 cut(s) 940
BspFNI CGCG 1 cut(s) 710
BspLI GGNNCC 2 cut(s) 729, 906
BspMAI CTGCAG 2 cut(s) 226, 458
BspPI GGATC 1 cut(s) 779
BsrDI GCAATG 3 cut(s) 608, 850, 993
BsrFI RCCGGY 1 cut(s) 405
BsrGI TGTACA 1 cut(s) 445
BsrI ACTGG 3 cut(s) 654, 762, 811
BssAI RCCGGY 1 cut(s) 405
BssECI CCNNGG 5 cut(s) 309, 426, 504, 595, 663
BssMI GATC 4 cut(s) 458, 515, 784, 1013
BssNI GRCGYC 1 cut(s) 432
BssT1I CCWWGG 2 cut(s) 426, 595
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 2 cut(s) 305, 852
BstACI GRCGYC 1 cut(s) 432
BstAPI GCANNNNNTGC 2 cut(s) 251, 923
BstAUI TGTACA 1 cut(s) 445
BstC8I GCNNGC 1 cut(s) 511
BstDEI CTNAG 5 cut(s) 355, 436, 473, 789, 948
BstDSI CCRYGG 3 cut(s) 426, 504, 595
BstF5I GGATG 4 cut(s) 280, 422, 491, 966
BstFNI CGCG 1 cut(s) 710
BstKTI GATC 4 cut(s) 461, 518, 787, 1016
BstMAI GTCTC 2 cut(s) 117, 461
BstMBI GATC 4 cut(s) 458, 515, 784, 1013
BstMWI GCNNNNNNNGC 9 cut(s) 22, 251, 365, 486, 625, 716, 902, 923, 1004
BstNI CCWGG 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 308
BstSFI CTRYAG 2 cut(s) 222, 454
BstUI CGCG 1 cut(s) 710
BstV1I GCAGC 2 cut(s) 255, 257
BstX2I RGATCY 2 cut(s) 515, 1013
BstXI CCANNNNNNTGG 1 cut(s) 988
BstYI RGATCY 2 cut(s) 515, 1013
BsuRI GGCC 3 cut(s) 594, 628, 905
BtgI CCRYGG 3 cut(s) 426, 504, 595
BtrI CACGTC 1 cut(s) 795
BtsCI GGATG 4 cut(s) 280, 422, 491, 966
BtsI GCAGTG 2 cut(s) 451, 502
BtsIMutI CAGTG 5 cut(s) 116, 451, 502, 647, 755
Cac8I GCNNGC 1 cut(s) 511
CaiI CAGNNNCTG 1 cut(s) 309
Cfr10I RCCGGY 1 cut(s) 405
Cfr13I GGNCC 2 cut(s) 62, 904
CseI GACGC 1 cut(s) 421
Csp6I GTAC 2 cut(s) 446, 712
CspCI CAANNNNNGTGG 2 cut(s) 663, 698
CviAII CATG 4 cut(s) 150, 427, 564, 596
CviQI GTAC 2 cut(s) 446, 712
DdeI CTNAG 5 cut(s) 355, 436, 473, 789, 948
DpnI GATC 4 cut(s) 460, 517, 786, 1015
DpnII GATC 4 cut(s) 458, 515, 784, 1013
EaeI YGGCCR 2 cut(s) 592, 626
Ecl136II GAGCTC 1 cut(s) 147
Eco130I CCWWGG 2 cut(s) 426, 595
Eco24I GRGCYC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 567
Eco88I CYCGRG 1 cut(s) 732
EcoICRI GAGCTC 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 308
EcoT14I CCWWGG 2 cut(s) 426, 595
EcoT38I GRGCYC 1 cut(s) 149
ErhI CCWWGG 2 cut(s) 426, 595
FaeI CATG 4 cut(s) 153, 430, 567, 599
FaiI YATR 7 cut(s) 93, 151, 185, 215, 428, 565, 597
FalI AAGNNNNNCTT 2 cut(s) 524, 556
FatI CATG 4 cut(s) 149, 426, 563, 595
FauI CCCGC 1 cut(s) 473
Fnu4HI GCNGC 3 cut(s) 14, 246, 269
FokI GGATG 4 cut(s) 287, 409, 498, 973
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 3 cut(s) 14, 246, 269
FspBI CTAG 3 cut(s) 255, 320, 875
GluI GCNGC 3 cut(s) 14, 246, 269
GsuI CTGGAG 2 cut(s) 671, 828
HaeIII GGCC 3 cut(s) 594, 628, 905
HapII CCGG 1 cut(s) 406
HgaI GACGC 1 cut(s) 421
Hin1I GRCGYC 1 cut(s) 432
Hin1II CATG 4 cut(s) 153, 430, 567, 599
HincII GTYRAC 1 cut(s) 938
HindII GTYRAC 1 cut(s) 938
HinfI GANTC 7 cut(s) 31, 49, 76, 187, 469, 500, 644
HpaII CCGG 1 cut(s) 406
Hpy166II GTNNAC 4 cut(s) 62, 397, 504, 938
Hpy188I TCNGA 5 cut(s) 337, 389, 586, 667, 872
Hpy188III TCNNGA 6 cut(s) 28, 35, 105, 232, 320, 734
Hpy8I GTNNAC 4 cut(s) 62, 397, 504, 938
Hpy99I CGWCG 2 cut(s) 945, 977
HpyAV CCTTC 1 cut(s) 548
HpyCH4III ACNGT 2 cut(s) 305, 852
HpyCH4IV ACGT 4 cut(s) 794, 913, 934, 940
HpyF10VI GCNNNNNNNGC 9 cut(s) 22, 251, 365, 486, 625, 716, 902, 923, 1004
HpyF3I CTNAG 5 cut(s) 355, 436, 473, 789, 948
HpySE526I ACGT 4 cut(s) 794, 913, 934, 940
Hsp92I GRCGYC 1 cut(s) 432
Hsp92II CATG 4 cut(s) 153, 430, 567, 599
Kzo9I GATC 4 cut(s) 458, 515, 784, 1013
Lsp1109I GCAGC 2 cut(s) 255, 257
LweI GCATC 4 cut(s) 467, 476, 883, 1007
MaeI CTAG 3 cut(s) 255, 320, 875
MaeII ACGT 4 cut(s) 794, 913, 934, 940
MaeIII GTNAC 3 cut(s) 102, 340, 802
MalI GATC 4 cut(s) 460, 517, 786, 1015
MboI GATC 4 cut(s) 458, 515, 784, 1013
MboII GAAGA 4 cut(s) 17, 90, 270, 581
MfeI CAATTG 1 cut(s) 249
MflI RGATCY 2 cut(s) 515, 1013
MhlI GDGCHC 1 cut(s) 149
MlsI TGGCCA 2 cut(s) 594, 628
MluCI AATT 4 cut(s) 249, 315, 346, 633
MluNI TGGCCA 2 cut(s) 594, 628
MlyI GAGTC 2 cut(s) 463, 509
MnlI CCTC 6 cut(s) 141, 172, 673, 718, 741, 945
Mox20I TGGCCA 2 cut(s) 594, 628
MscI TGGCCA 2 cut(s) 594, 628
MseI TTAA 3 cut(s) 531, 839, 1030
MslI CAYNNNNRTG 1 cut(s) 233
Msp20I TGGCCA 2 cut(s) 594, 628
MspI CCGG 1 cut(s) 406
MspR9I CCNGG 1 cut(s) 310
MunI CAATTG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 928
MvaI CCWGG 1 cut(s) 310
MvnI CGCG 1 cut(s) 710
MwoI GCNNNNNNNGC 9 cut(s) 22, 251, 365, 486, 625, 716, 902, 923, 1004
NcoI CCATGG 2 cut(s) 426, 595
NdeII GATC 4 cut(s) 458, 515, 784, 1013
NlaIII CATG 4 cut(s) 153, 430, 567, 599
NlaIV GGNNCC 2 cut(s) 729, 906
NmuCI GTSAC 1 cut(s) 102
PaeR7I CTCGAG 1 cut(s) 732
PcsI WCGNNNNNNNCGW 1 cut(s) 940
PctI GAATGC 1 cut(s) 928
PfeI GAWTC 5 cut(s) 31, 49, 76, 187, 644
PkrI GCNGC 3 cut(s) 15, 247, 270
PleI GAGTC 2 cut(s) 463, 508
PpsI GAGTC 2 cut(s) 463, 508
Psp124BI GAGCTC 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 2 cut(s) 729, 906
PspPI GGNCC 2 cut(s) 62, 904
PstI CTGCAG 2 cut(s) 226, 458
PstNI CAGNNNCTG 1 cut(s) 309
PsuI RGATCY 2 cut(s) 515, 1013
RsaI GTAC 2 cut(s) 447, 713
RsaNI GTAC 2 cut(s) 446, 712
RseI CAYNNNNRTG 1 cut(s) 233
SacI GAGCTC 1 cut(s) 149
SaqAI TTAA 3 cut(s) 531, 839, 1030
SatI GCNGC 3 cut(s) 14, 246, 269
Sau3AI GATC 4 cut(s) 458, 515, 784, 1013
Sau96I GGNCC 2 cut(s) 62, 904
SchI GAGTC 2 cut(s) 463, 509
ScrFI CCNGG 1 cut(s) 310
SduI GDGCHC 1 cut(s) 149
SfaNI GCATC 4 cut(s) 467, 476, 883, 1007
SfcI CTRYAG 2 cut(s) 222, 454
Sfr274I CTCGAG 1 cut(s) 732
SinI GGWCC 1 cut(s) 62
SlaI CTCGAG 1 cut(s) 732
SmiMI CAYNNNNRTG 1 cut(s) 233
SmlI CTYRAG 3 cut(s) 26, 541, 732
SmoI CTYRAG 3 cut(s) 26, 541, 732
Sse9I AATT 4 cut(s) 249, 315, 346, 633
SsiI CCGC 2 cut(s) 330, 480
SspMI CTAG 3 cut(s) 255, 320, 875
SstI GAGCTC 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 308
StyI CCWWGG 2 cut(s) 426, 595
TaaI ACNGT 2 cut(s) 305, 852
TaiI ACGT 4 cut(s) 797, 916, 937, 943
TaqI TCGA 3 cut(s) 36, 239, 733
TasI AATT 4 cut(s) 249, 315, 346, 633
TatI WGTACW 1 cut(s) 445
TfiI GAWTC 5 cut(s) 31, 49, 76, 187, 644
Tru1I TTAA 3 cut(s) 531, 839, 1030
Tru9I TTAA 3 cut(s) 531, 839, 1030
TscAI CASTG 5 cut(s) 123, 458, 502, 654, 762
TseFI GTSAC 1 cut(s) 102
TseI GCWGC 3 cut(s) 13, 245, 268
Tsp45I GTSAC 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 861
TspRI CASTG 5 cut(s) 123, 458, 502, 654, 762
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 2 cut(s) 315, 346
XbaI TCTAGA 1 cut(s) 319
XhoI CTCGAG 1 cut(s) 732
XspI CTAG 3 cut(s) 255, 320, 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.