Rh5DG257100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0014051
Physical Location & Seq
Reverse (-)
30294239 .. 30298276
4038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG257100.1

Sequence Viewer

Length: 1050 bp
ATGGAAAAAGGAAAAGCCCTCGTCTCCACAACGATTGCTTTGGCTAAATTGGATTTGAATCCCAAATCAAACCCCATGGTCCAAAACCCTAACCCTCAATCTCAATCCTCCAGAACACAGTTTGGAAGGTCAAAATCACCTCCTACTTTACTCAATTTGTGTCTTGGAGTTGTTGGTAGTCACTTGGAGGATATCGTCCCCCATTTGGCTGACATTGCACTTGACTTTCCACCAGAAATCAAGAGGGTACTGGCGGCCATTGCGAGAAGAAGAAAGTTACTCAAGGATGATGTTATTATCGCATTAGCTGATGAGAGCTGGGACGTTCTTGACCTCTCTGCATCAGATGTTTCAGATTTGGGCTTAGCGAAAGTGGCTGAGATATGTGGATCTGTTCGAGCTGTTGATATTAGCCGGTGTGATAATATTACTGCTGTTGGGGTTTCTGAACTTGTGCACCGCTGTCTTTCATTGGAGACATTGAGATGTGGAGGGAGCCGGAATAGTGATCGCACTGCACGCAGGTGCTTGGATGTATTAAAACCGAAGTTGAACAATGTAGAGGGAGATTCCTGGGAAGAACTGAAGACTGAAGAACTTGTTACTGTTGCAGATACATTGAGGTGGCTTGTGTGGCCGCAGATTGATAAAGATTCCTTGGAAAGATATTCCACTGAATGCCCACGGATTATAGTTAATCCAAAGCCATCCCCCTTTGGATTCAGAGGAACCCAAGTTCCCTGGGAAGCATTACCAGATATCCAATTGGATAATTCTGTGGTCAAGGATATTGATCCGAAGACATGGGTGACATGGGGTTTTTTACCAAGGGCAATGCCTCCACCTCTTTCAATCTCAGGTCACAAGGAATTGTCTTTGGCTGAAAAGTTCAGACTTGCATTTCAAGAAAGGGATAGCCGGTTAGCTCTAAAGCGTGCTAAAAATGCAAGGCAACATCAGCGACGTGCAGCGAGGGAGAGGATGATGATGGATACAGGAAGGAAGGTATTAGCACTAGCCTCGCAAGCGAGCAGATCTTTCCACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

349

Amino Acids

38.89

Weight (kDa)

9.06

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26980
fragaria_vesca FvH4_3g22820
malus_domestica MD11G1217200.v1.1
prunus_persica Prupe.4G214500_v2.0.a1
pyrus_communis pycom11g19110
rosa_chinensis RchiOBHm_Chr5g0040061
rosa_laevigata RLG00000033953
rosa_multiflora Rmu_sc0000103.1_g000059 Rmu_sc0000247.1_g000015
rosa_roxburghii Rroxscaffold_1G00041220
rosa_rugosa Rorug05G0183100
rosa_samantha Rh5AG269600 Rh5BG273300 Rh5CG306200 Rh5DG257100 Rh5DG281400
rosa_wichuraiana Rw5G025220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 513
Acc36I ACCTGC 1 cut(s) 513
AciI CCGC 3 cut(s) 254, 460, 638
AclWI GGATC 2 cut(s) 397, 788
AcoI YGGCCR 2 cut(s) 255, 635
AcuI CTGAAG 2 cut(s) 605, 612
AfaI GTAC 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 4 cut(s) 58, 553, 852, 905
AjiI CACGTC 1 cut(s) 965
AjnI CCWGG 2 cut(s) 572, 740
AleI CACNNNNGTG 1 cut(s) 523
AloI GAACNNNNNNTCC 4 cut(s) 720, 721, 752, 753
AluBI AGCT 4 cut(s) 308, 318, 401, 926
AluI AGCT 4 cut(s) 308, 318, 401, 926
Alw21I GWGCWC 1 cut(s) 459
Alw26I GTCTC 2 cut(s) 28, 470
Alw44I GTGCAC 1 cut(s) 455
AlwI GGATC 2 cut(s) 397, 788
AoxI GGCC 2 cut(s) 255, 635
ApaLI GTGCAC 1 cut(s) 455
ApeKI GCWGC 1 cut(s) 968
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 129, 820
AvaII GGWCC 1 cut(s) 79
BaeGI GKGCMC 1 cut(s) 459
BbsI GAAGAC 2 cut(s) 593, 806
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 1 cut(s) 980
BccI CCATC 2 cut(s) 715, 982
BcgI CGANNNNNNTGC 2 cut(s) 1002, 1036
BciT130I CCWGG 2 cut(s) 574, 742
BciVI GTATCC 1 cut(s) 985
BcoDI GTCTC 2 cut(s) 28, 470
BfaI CTAG 1 cut(s) 1016
BfuAI ACCTGC 1 cut(s) 513
BfuI GTATCC 1 cut(s) 985
BglII AGATCT 1 cut(s) 1034
BisI GCNGC 3 cut(s) 255, 638, 969
BlpI GCTNAGC 1 cut(s) 364
BlsI GCNGC 3 cut(s) 256, 639, 970
Bme1390I CCNGG 2 cut(s) 574, 742
Bme18I GGWCC 1 cut(s) 79
BmgBI CACGTC 1 cut(s) 965
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 497, 730
BmrFI CCNGG 2 cut(s) 574, 742
BmsI GCATC 1 cut(s) 350
BpiI GAAGAC 2 cut(s) 593, 806
BpmI CTGGAG 1 cut(s) 94
Bpu1102I GCTNAGC 1 cut(s) 364
BpuEI CTTGAG 1 cut(s) 266
BsaBI GATNNNNATC 2 cut(s) 57, 792
BsaJI CCNNGG 7 cut(s) 75, 573, 657, 683, 740, 741, 827
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse118I RCCGGY 2 cut(s) 414, 918
Bse1I ACTGG 1 cut(s) 255
Bse3DI GCAATG 3 cut(s) 213, 258, 840
Bse8I GATNNNNATC 2 cut(s) 57, 792
BseBI CCWGG 2 cut(s) 574, 742
BseDI CCNNGG 7 cut(s) 75, 573, 657, 683, 740, 741, 827
BseGI GGATG 4 cut(s) 292, 538, 707, 987
BseJI GATNNNNATC 2 cut(s) 57, 792
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 3 cut(s) 213, 258, 840
BseMII CTCAG 2 cut(s) 369, 870
BseNI ACTGG 1 cut(s) 255
BseSI GKGCMC 1 cut(s) 459
BseXI GCAGC 1 cut(s) 980
BseYI CCCAGC 1 cut(s) 318
BsgI GTGCAG 2 cut(s) 501, 987
BshFI GGCC 2 cut(s) 257, 637
BsiHKAI GWGCWC 1 cut(s) 459
BsiSI CCGG 3 cut(s) 415, 499, 919
BslFI GGGAC 2 cut(s) 182, 335
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 2 cut(s) 28, 470
BsmBI CGTCTC 1 cut(s) 28
BsmFI GGGAC 2 cut(s) 182, 335
BsmI GAATGC 1 cut(s) 683
BsnI GGCC 2 cut(s) 257, 637
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 4 cut(s) 389, 508, 793, 1034
Bsp1720I GCTNAGC 1 cut(s) 364
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 3 cut(s) 254, 460, 638
BspANI GGCC 2 cut(s) 257, 637
BspCNI CTCAG 2 cut(s) 370, 869
BspLI GGNNCC 2 cut(s) 497, 730
BspMI ACCTGC 1 cut(s) 513
BspPI GGATC 2 cut(s) 397, 788
BsrDI GCAATG 3 cut(s) 213, 258, 840
BsrFI RCCGGY 2 cut(s) 414, 918
BsrI ACTGG 1 cut(s) 255
BssAI RCCGGY 2 cut(s) 414, 918
BssECI CCNNGG 7 cut(s) 75, 573, 657, 683, 740, 741, 827
BssMI GATC 4 cut(s) 389, 508, 793, 1034
BssT1I CCWWGG 3 cut(s) 75, 657, 827
Bst2UI CCWGG 2 cut(s) 574, 742
Bst4CI ACNGT 3 cut(s) 120, 607, 1046
BstC8I GCNNGC 4 cut(s) 520, 936, 1026, 1030
BstDEI CTNAG 3 cut(s) 364, 378, 856
BstDSI CCRYGG 2 cut(s) 75, 683
BstF5I GGATG 4 cut(s) 292, 538, 707, 987
BstKTI GATC 4 cut(s) 392, 511, 796, 1037
BstMAI GTCTC 2 cut(s) 28, 470
BstMBI GATC 4 cut(s) 389, 508, 793, 1034
BstMWI GCNNNNNNNGC 8 cut(s) 215, 260, 374, 519, 634, 944, 958, 1025
BstNI CCWGG 2 cut(s) 574, 742
BstSCI CCNGG 2 cut(s) 572, 740
BstSLI GKGCMC 1 cut(s) 459
BstV1I GCAGC 1 cut(s) 980
BstV2I GAAGAC 2 cut(s) 593, 806
BstX2I RGATCY 2 cut(s) 389, 1034
BstYI RGATCY 2 cut(s) 389, 1034
BsuI GTATCC 1 cut(s) 985
BsuRI GGCC 2 cut(s) 257, 637
BtgI CCRYGG 2 cut(s) 75, 683
BtrI CACGTC 1 cut(s) 965
BtsCI GGATG 4 cut(s) 292, 538, 707, 987
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 2 cut(s) 513, 672
BveI ACCTGC 1 cut(s) 513
Cac8I GCNNGC 4 cut(s) 520, 936, 1026, 1030
Cfr10I RCCGGY 2 cut(s) 414, 918
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 248
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 3 cut(s) 76, 804, 813
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 3 cut(s) 364, 378, 856
DpnI GATC 4 cut(s) 391, 510, 795, 1036
DpnII GATC 4 cut(s) 389, 508, 793, 1034
EaeI YGGCCR 2 cut(s) 255, 635
Eco130I CCWWGG 3 cut(s) 75, 657, 827
Eco32I GATATC 2 cut(s) 193, 760
Eco47I GGWCC 1 cut(s) 79
Eco57I CTGAAG 2 cut(s) 605, 612
EcoRII CCWGG 2 cut(s) 572, 740
EcoRV GATATC 2 cut(s) 193, 760
EcoT14I CCWWGG 3 cut(s) 75, 657, 827
ErhI CCWWGG 3 cut(s) 75, 657, 827
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 3 cut(s) 79, 807, 816
FaiI YATR 5 cut(s) 77, 385, 692, 805, 814
FaqI GGGAC 2 cut(s) 182, 335
FatI CATG 3 cut(s) 75, 803, 812
Fnu4HI GCNGC 3 cut(s) 255, 638, 969
FokI GGATG 4 cut(s) 299, 545, 694, 994
Fsp4HI GCNGC 3 cut(s) 255, 638, 969
FspBI CTAG 1 cut(s) 1016
GluI GCNGC 3 cut(s) 255, 638, 969
GsaI CCCAGC 1 cut(s) 322
GsuI CTGGAG 1 cut(s) 94
HaeIII GGCC 2 cut(s) 257, 637
HapII CCGG 3 cut(s) 415, 499, 919
Hin1II CATG 3 cut(s) 79, 807, 816
HinfI GANTC 4 cut(s) 58, 569, 653, 720
HpaII CCGG 3 cut(s) 415, 499, 919
HphI GGTGA 2 cut(s) 129, 820
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 6 cut(s) 346, 355, 448, 725, 798, 893
Hpy188III TCNNGA 4 cut(s) 111, 241, 329, 905
Hpy8I GTNNAC 1 cut(s) 457
Hpy99I CGWCG 1 cut(s) 966
HpyAV CCTTC 3 cut(s) 120, 993, 997
HpyCH4III ACNGT 3 cut(s) 120, 607, 1046
HpyCH4IV ACGT 2 cut(s) 324, 964
HpyCH4V TGCA 8 cut(s) 218, 341, 457, 518, 611, 899, 947, 968
HpyF10VI GCNNNNNNNGC 8 cut(s) 215, 260, 374, 519, 634, 944, 958, 1025
HpyF3I CTNAG 3 cut(s) 364, 378, 856
HpySE526I ACGT 2 cut(s) 324, 964
Hsp92II CATG 3 cut(s) 79, 807, 816
Kzo9I GATC 4 cut(s) 389, 508, 793, 1034
LmnI GCTCC 1 cut(s) 495
Lsp1109I GCAGC 1 cut(s) 980
LweI GCATC 1 cut(s) 350
MaeI CTAG 1 cut(s) 1016
MaeII ACGT 2 cut(s) 324, 964
MaeIII GTNAC 5 cut(s) 179, 276, 601, 808, 860
MalI GATC 4 cut(s) 391, 510, 795, 1036
MboI GATC 4 cut(s) 389, 508, 793, 1034
MboII GAAGA 6 cut(s) 279, 282, 590, 598, 605, 811
MfeI CAATTG 1 cut(s) 764
MflI RGATCY 2 cut(s) 389, 1034
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 5 cut(s) 47, 154, 764, 772, 869
MseI TTAA 3 cut(s) 539, 696, 1048
MslI CAYNNNNRTG 3 cut(s) 484, 523, 622
MspA1I CMGCKG 1 cut(s) 462
MspI CCGG 3 cut(s) 415, 499, 919
MspR9I CCNGG 2 cut(s) 574, 742
MunI CAATTG 1 cut(s) 764
Mva1269I GAATGC 1 cut(s) 683
MvaI CCWGG 2 cut(s) 574, 742
MwoI GCNNNNNNNGC 8 cut(s) 215, 260, 374, 519, 634, 944, 958, 1025
NcoI CCATGG 1 cut(s) 75
NdeII GATC 4 cut(s) 389, 508, 793, 1034
NlaIII CATG 3 cut(s) 79, 807, 816
NlaIV GGNNCC 2 cut(s) 497, 730
NmuCI GTSAC 3 cut(s) 179, 808, 860
OliI CACNNNNGTG 1 cut(s) 523
PaqCI CACCTGC 1 cut(s) 513
PasI CCCWGGG 1 cut(s) 741
PctI GAATGC 1 cut(s) 683
PfeI GAWTC 4 cut(s) 58, 569, 653, 720
PkrI GCNGC 3 cut(s) 256, 639, 970
Psp6I CCWGG 2 cut(s) 572, 740
PspFI CCCAGC 1 cut(s) 318
PspGI CCWGG 2 cut(s) 572, 740
PspN4I GGNNCC 2 cut(s) 497, 730
PspPI GGNCC 1 cut(s) 79
PsuI RGATCY 2 cut(s) 389, 1034
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
RseI CAYNNNNRTG 3 cut(s) 484, 523, 622
SaqAI TTAA 3 cut(s) 539, 696, 1048
SatI GCNGC 3 cut(s) 255, 638, 969
Sau3AI GATC 4 cut(s) 389, 508, 793, 1034
Sau96I GGNCC 1 cut(s) 79
ScrFI CCNGG 2 cut(s) 574, 742
SduI GDGCHC 1 cut(s) 459
SfaNI GCATC 1 cut(s) 350
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 3 cut(s) 484, 523, 622
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 5 cut(s) 47, 154, 764, 772, 869
SsiI CCGC 3 cut(s) 254, 460, 638
SspI AATATT 1 cut(s) 427
SspMI CTAG 1 cut(s) 1016
StyD4I CCNGG 2 cut(s) 572, 740
StyI CCWWGG 3 cut(s) 75, 657, 827
TaaI ACNGT 3 cut(s) 120, 607, 1046
TaiI ACGT 2 cut(s) 327, 967
TaqI TCGA 1 cut(s) 397
TasI AATT 5 cut(s) 47, 154, 764, 772, 869
TauI GCSGC 2 cut(s) 257, 640
TfiI GAWTC 4 cut(s) 58, 569, 653, 720
Tru1I TTAA 3 cut(s) 539, 696, 1048
Tru9I TTAA 3 cut(s) 539, 696, 1048
TscAI CASTG 2 cut(s) 520, 679
TseFI GTSAC 3 cut(s) 179, 808, 860
TseI GCWGC 1 cut(s) 968
Tsp45I GTSAC 3 cut(s) 179, 808, 860
TspDTI ATGAA 1 cut(s) 459
TspGWI ACGGA 1 cut(s) 700
TspRI CASTG 2 cut(s) 520, 679
VneI GTGCAC 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 79
XspI CTAG 1 cut(s) 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.