FvH4_3g22820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014051
Physical Location & Seq
Forward (+)
15986076 .. 15989986
3911 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22820.t1

Sequence Viewer

Length: 1044 bp
ATGGAAAAAGAAAAAGCCCTCGTCTCCACAACGATTGCTTTGACCAAATTGGATTTGAATCCCAGATCACACCGCATAGTTCAAAACCCTCAATCTCAAACCTCAAGAACACAGCTTGGAAGGCCAAAATCAGCTCCCACTTTACTCAATTTGTGTCTTGGAGTTGTTGGTAGTCACTTGGAGGATCTTATCCCCCATTTGGCTGACATTGCACTTGACTTTCCATCAGAAATTAAGAGGGTGCTGGTGGCGATTGCGAGAAGAAGGAAGTTACTTAAGGATGATGTTATTATAGCATTAGCTGATGAGAGCTGGGATGTTCTTGACCTCTCTGCATCAGATGTTTCGGATTTGGGTTTAGCAAAAGTGGCTGAGATTTGTGGATCTCTTCGAGCTGTTGATATTAGCCGGTGTGATAATATTACTGCTATAGGGGTGTCTGAACTTGTGCACCACTGTCTTTCATTGGAGACATTGAGATGTGGAGGGAGCCGGAATAGTGATCGCACTGCACGCAGGTGCTTAGATGTATTTAAGCCAGAGTTGAACAATTTAGAGGGAGATTCCTGGGAAGAACTGAAGACTGAAGAACTTGGTAATGTTGCAGATACGTTACGGTGGCTTGTGTGGCCACAGATTGATAAAGATTCCTTGGAAAGATATTCCACTGAATGCCCACAGATTATTGTAAATCCAAAGCCATCCCCCTTTGGATTCAGTGGAACCCAAGTTCCATGGGAAGCATTACCAGATATCCAGTTGGATAATTCTGTGGTCAAGGATATTGATCCGAAGACATGGGTGACATGGGGTTTTATACCGAGGGCAATGCCTCCATCTCCTTTAATCGCAGACCCCAAGGAATTGTCTTTGGCTGAGAAGTTCAGACTTGCATTTGAAGAAAGGGATACCCGGTATGCTCTAAAGCGTGCCAAAAATGCAAGGCAACATCAACGACGTGCAGCAAGGGAGAGGATGATGATGGATATAGAAAGAAAAGCATTAGCACTAGCGTCCCAAGCGAGCAGATCTTTACATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

348

Amino Acids

38.86

Weight (kDa)

6.68

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26980
fragaria_vesca FvH4_3g22820
malus_domestica MD11G1217200.v1.1
prunus_persica Prupe.4G214500_v2.0.a1
pyrus_communis pycom11g19110
rosa_chinensis RchiOBHm_Chr5g0040061
rosa_laevigata RLG00000033953
rosa_multiflora Rmu_sc0000103.1_g000059 Rmu_sc0000247.1_g000015
rosa_roxburghii Rroxscaffold_1G00041220
rosa_rugosa Rorug05G0183100
rosa_samantha Rh5AG269600 Rh5BG273300 Rh5CG306200 Rh5DG257100 Rh5DG281400
rosa_wichuraiana Rw5G025220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 507
Acc36I ACCTGC 1 cut(s) 507
AciI CCGC 1 cut(s) 73
AclWI GGATC 3 cut(s) 192, 391, 782
AcoI YGGCCR 1 cut(s) 629
AcuI CTGAAG 2 cut(s) 599, 606
AfiI CCNNNNNNNGG 1 cut(s) 199
AflII CTTAAG 1 cut(s) 275
AgsI TTSAA 4 cut(s) 58, 83, 547, 899
AjiI CACGTC 1 cut(s) 959
AjnI CCWGG 1 cut(s) 566
AleI CACNNNNGTG 1 cut(s) 517
AloI GAACNNNNNNTCC 4 cut(s) 714, 715, 746, 747
AluBI AGCT 5 cut(s) 115, 134, 302, 312, 395
AluI AGCT 5 cut(s) 115, 134, 302, 312, 395
Alw21I GWGCWC 1 cut(s) 453
Alw26I GTCTC 2 cut(s) 28, 464
Alw44I GTGCAC 1 cut(s) 449
AlwI GGATC 3 cut(s) 192, 391, 782
AoxI GGCC 2 cut(s) 122, 629
ApaLI GTGCAC 1 cut(s) 449
ApeKI GCWGC 1 cut(s) 962
AsuC2I CCSGG 1 cut(s) 913
AsuHPI GGTGA 1 cut(s) 814
BaeGI GKGCMC 1 cut(s) 453
BalI TGGCCA 1 cut(s) 631
BbsI GAAGAC 2 cut(s) 587, 800
Bbv12I GWGCWC 1 cut(s) 453
BbvI GCAGC 1 cut(s) 974
BccI CCATC 4 cut(s) 232, 709, 844, 976
BcgI CGANNNNNNTGC 2 cut(s) 811, 845
BciT130I CCWGG 1 cut(s) 568
BciVI GTATCC 1 cut(s) 901
BcnI CCSGG 1 cut(s) 913
BcoDI GTCTC 2 cut(s) 28, 464
BfaI CTAG 1 cut(s) 1010
BfmI CTRYAG 1 cut(s) 429
BfrI CTTAAG 1 cut(s) 275
BfuAI ACCTGC 1 cut(s) 507
BfuI GTATCC 1 cut(s) 901
BglII AGATCT 1 cut(s) 1028
BisI GCNGC 1 cut(s) 963
BlsI GCNGC 1 cut(s) 964
Bme1390I CCNGG 2 cut(s) 568, 913
BmgBI CACGTC 1 cut(s) 959
BmiI GGNNCC 2 cut(s) 491, 724
BmrFI CCNGG 2 cut(s) 568, 913
BmsI GCATC 1 cut(s) 344
BpiI GAAGAC 2 cut(s) 587, 800
BpuEI CTTGAG 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 913
BsaBI GATNNNNATC 2 cut(s) 57, 786
BsaJI CCNNGG 5 cut(s) 567, 651, 734, 821, 858
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse118I RCCGGY 1 cut(s) 408
Bse1I ACTGG 1 cut(s) 757
Bse3DI GCAATG 2 cut(s) 207, 834
Bse8I GATNNNNATC 2 cut(s) 57, 786
BseBI CCWGG 1 cut(s) 568
BseDI CCNNGG 5 cut(s) 567, 651, 734, 821, 858
BseGI GGATG 4 cut(s) 286, 322, 701, 981
BseJI GATNNNNATC 2 cut(s) 57, 786
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMI GCAATG 2 cut(s) 207, 834
BseMII CTCAG 2 cut(s) 363, 867
BseNI ACTGG 1 cut(s) 757
BseSI GKGCMC 1 cut(s) 453
BseXI GCAGC 1 cut(s) 974
BseYI CCCAGC 1 cut(s) 312
BsgI GTGCAG 2 cut(s) 495, 981
BshFI GGCC 2 cut(s) 124, 631
BsiHKAI GWGCWC 1 cut(s) 453
BsiSI CCGG 3 cut(s) 409, 493, 913
BslFI GGGAC 1 cut(s) 1000
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 2 cut(s) 28, 464
BsmBI CGTCTC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 1000
BsmI GAATGC 1 cut(s) 677
BsnI GGCC 2 cut(s) 124, 631
Bsp1286I GDGCHC 1 cut(s) 453
Bsp143I GATC 6 cut(s) 65, 184, 383, 502, 787, 1028
Bsp19I CCATGG 1 cut(s) 734
BspACI CCGC 1 cut(s) 73
BspANI GGCC 2 cut(s) 124, 631
BspCNI CTCAG 2 cut(s) 364, 868
BspLI GGNNCC 2 cut(s) 491, 724
BspMI ACCTGC 1 cut(s) 507
BspPI GGATC 3 cut(s) 192, 391, 782
BspTI CTTAAG 1 cut(s) 275
BsrDI GCAATG 2 cut(s) 207, 834
BsrFI RCCGGY 1 cut(s) 408
BsrI ACTGG 1 cut(s) 757
BssAI RCCGGY 1 cut(s) 408
BssECI CCNNGG 5 cut(s) 567, 651, 734, 821, 858
BssMI GATC 6 cut(s) 65, 184, 383, 502, 787, 1028
BssT1I CCWWGG 3 cut(s) 651, 734, 858
Bst2UI CCWGG 1 cut(s) 568
Bst4CI ACNGT 2 cut(s) 458, 618
Bst6I CTCTTC 1 cut(s) 393
BstAFI CTTAAG 1 cut(s) 275
BstC8I GCNNGC 3 cut(s) 514, 930, 1024
BstDEI CTNAG 3 cut(s) 372, 523, 876
BstDSI CCRYGG 1 cut(s) 734
BstF5I GGATG 4 cut(s) 286, 322, 701, 981
BstKTI GATC 6 cut(s) 68, 187, 386, 505, 790, 1031
BstMAI GTCTC 2 cut(s) 28, 464
BstMBI GATC 6 cut(s) 65, 184, 383, 502, 787, 1028
BstMWI GCNNNNNNNGC 7 cut(s) 121, 209, 368, 513, 628, 938, 1019
BstNI CCWGG 1 cut(s) 568
BstSCI CCNGG 2 cut(s) 566, 911
BstSFI CTRYAG 1 cut(s) 429
BstSLI GKGCMC 1 cut(s) 453
BstV1I GCAGC 1 cut(s) 974
BstV2I GAAGAC 2 cut(s) 587, 800
BstX2I RGATCY 3 cut(s) 184, 383, 1028
BstYI RGATCY 3 cut(s) 184, 383, 1028
BsuI GTATCC 1 cut(s) 901
BsuRI GGCC 2 cut(s) 124, 631
BtgI CCRYGG 1 cut(s) 734
BtrI CACGTC 1 cut(s) 959
BtsCI GGATG 4 cut(s) 286, 322, 701, 981
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 4 cut(s) 454, 507, 666, 724
BveI ACCTGC 1 cut(s) 507
Cac8I GCNNGC 3 cut(s) 514, 930, 1024
Cfr10I RCCGGY 1 cut(s) 408
CseI GACGC 1 cut(s) 1002
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 4 cut(s) 735, 798, 807, 1037
DdeI CTNAG 3 cut(s) 372, 523, 876
DpnI GATC 6 cut(s) 67, 186, 385, 504, 789, 1030
DpnII GATC 6 cut(s) 65, 184, 383, 502, 787, 1028
EaeI YGGCCR 1 cut(s) 629
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Eco130I CCWWGG 3 cut(s) 651, 734, 858
Eco32I GATATC 1 cut(s) 754
Eco57I CTGAAG 2 cut(s) 599, 606
EcoRII CCWGG 1 cut(s) 566
EcoRV GATATC 1 cut(s) 754
EcoT14I CCWWGG 3 cut(s) 651, 734, 858
ErhI CCWWGG 3 cut(s) 651, 734, 858
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 4 cut(s) 738, 801, 810, 1040
FaqI GGGAC 1 cut(s) 1000
FatI CATG 4 cut(s) 734, 797, 806, 1036
Fnu4HI GCNGC 1 cut(s) 963
FokI GGATG 4 cut(s) 293, 329, 688, 988
Fsp4HI GCNGC 1 cut(s) 963
FspBI CTAG 1 cut(s) 1010
GluI GCNGC 1 cut(s) 963
GsaI CCCAGC 1 cut(s) 316
HaeIII GGCC 2 cut(s) 124, 631
HapII CCGG 3 cut(s) 409, 493, 913
HgaI GACGC 1 cut(s) 1002
Hin1II CATG 4 cut(s) 738, 801, 810, 1040
HinfI GANTC 4 cut(s) 58, 563, 647, 714
HpaII CCGG 3 cut(s) 409, 493, 913
HphI GGTGA 1 cut(s) 814
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 6 cut(s) 229, 340, 349, 442, 792, 887
Hpy188III TCNNGA 2 cut(s) 105, 323
Hpy8I GTNNAC 1 cut(s) 451
Hpy99I CGWCG 1 cut(s) 960
HpyAV CCTTC 2 cut(s) 114, 258
HpyCH4III ACNGT 2 cut(s) 458, 618
HpyCH4IV ACGT 2 cut(s) 611, 958
HpyCH4V TGCA 8 cut(s) 212, 335, 451, 512, 605, 893, 941, 962
HpyF10VI GCNNNNNNNGC 7 cut(s) 121, 209, 368, 513, 628, 938, 1019
HpyF3I CTNAG 3 cut(s) 372, 523, 876
HpySE526I ACGT 2 cut(s) 611, 958
Hsp92II CATG 4 cut(s) 738, 801, 810, 1040
Kzo9I GATC 6 cut(s) 65, 184, 383, 502, 787, 1028
LmnI GCTCC 2 cut(s) 139, 489
Lsp1109I GCAGC 1 cut(s) 974
LweI GCATC 1 cut(s) 344
MaeI CTAG 1 cut(s) 1010
MaeII ACGT 2 cut(s) 611, 958
MaeIII GTNAC 4 cut(s) 173, 270, 612, 802
MalI GATC 6 cut(s) 67, 186, 385, 504, 789, 1030
MboI GATC 6 cut(s) 65, 184, 383, 502, 787, 1028
MboII GAAGA 7 cut(s) 273, 380, 584, 592, 599, 805, 911
MflI RGATCY 3 cut(s) 184, 383, 1028
MhlI GDGCHC 1 cut(s) 453
MlsI TGGCCA 1 cut(s) 631
MluCI AATT 6 cut(s) 47, 148, 231, 550, 766, 863
MluNI TGGCCA 1 cut(s) 631
MmeI TCCRAC 1 cut(s) 741
Mox20I TGGCCA 1 cut(s) 631
MscI TGGCCA 1 cut(s) 631
MseI TTAA 5 cut(s) 234, 276, 534, 845, 1042
MslI CAYNNNNRTG 2 cut(s) 478, 517
Msp20I TGGCCA 1 cut(s) 631
MspCI CTTAAG 1 cut(s) 275
MspI CCGG 3 cut(s) 409, 493, 913
MspR9I CCNGG 2 cut(s) 568, 913
Mva1269I GAATGC 1 cut(s) 677
MvaI CCWGG 1 cut(s) 568
MwoI GCNNNNNNNGC 7 cut(s) 121, 209, 368, 513, 628, 938, 1019
NciI CCSGG 1 cut(s) 913
NcoI CCATGG 1 cut(s) 734
NdeII GATC 6 cut(s) 65, 184, 383, 502, 787, 1028
NlaIII CATG 4 cut(s) 738, 801, 810, 1040
NlaIV GGNNCC 2 cut(s) 491, 724
NmuCI GTSAC 2 cut(s) 173, 802
OliI CACNNNNGTG 1 cut(s) 517
PaqCI CACCTGC 1 cut(s) 507
PctI GAATGC 1 cut(s) 677
PfeI GAWTC 4 cut(s) 58, 563, 647, 714
PkrI GCNGC 1 cut(s) 964
Psp6I CCWGG 1 cut(s) 566
PspFI CCCAGC 1 cut(s) 312
PspGI CCWGG 1 cut(s) 566
PspN4I GGNNCC 2 cut(s) 491, 724
PsuI RGATCY 3 cut(s) 184, 383, 1028
RseI CAYNNNNRTG 2 cut(s) 478, 517
SaqAI TTAA 5 cut(s) 234, 276, 534, 845, 1042
SatI GCNGC 1 cut(s) 963
Sau3AI GATC 6 cut(s) 65, 184, 383, 502, 787, 1028
ScrFI CCNGG 2 cut(s) 568, 913
SduI GDGCHC 1 cut(s) 453
SfaNI GCATC 1 cut(s) 344
SfcI CTRYAG 1 cut(s) 429
SmiMI CAYNNNNRTG 2 cut(s) 478, 517
SmlI CTYRAG 2 cut(s) 103, 275
SmoI CTYRAG 2 cut(s) 103, 275
Sse9I AATT 6 cut(s) 47, 148, 231, 550, 766, 863
SsiI CCGC 1 cut(s) 73
SspI AATATT 1 cut(s) 421
SspMI CTAG 1 cut(s) 1010
StyD4I CCNGG 2 cut(s) 566, 911
StyI CCWWGG 3 cut(s) 651, 734, 858
TaaI ACNGT 2 cut(s) 458, 618
TaiI ACGT 2 cut(s) 614, 961
TaqI TCGA 1 cut(s) 391
TasI AATT 6 cut(s) 47, 148, 231, 550, 766, 863
TfiI GAWTC 4 cut(s) 58, 563, 647, 714
Tru1I TTAA 5 cut(s) 234, 276, 534, 845, 1042
Tru9I TTAA 5 cut(s) 234, 276, 534, 845, 1042
TscAI CASTG 4 cut(s) 461, 514, 673, 724
TseFI GTSAC 2 cut(s) 173, 802
TseI GCWGC 1 cut(s) 962
Tsp45I GTSAC 2 cut(s) 173, 802
TspDTI ATGAA 1 cut(s) 453
TspRI CASTG 4 cut(s) 461, 514, 673, 724
Vha464I CTTAAG 1 cut(s) 275
VneI GTGCAC 1 cut(s) 449
XspI CTAG 1 cut(s) 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.