Prupe.4G214500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014051
Physical Location & Seq
Forward (+)
13397057 .. 13400454
3398 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G214500.1

Sequence Viewer

Length: 1044 bp
ATGGAAAAACGAAAAGCCGTCGCTTCTCTTGCAAATTCTTTGAACAATTTAGATTTGAATTCCAGATCCAATCCCAACCCCCAAATCCCTCAAACTCAATCCTCCAGAAGGCAGCTTGAAAGGACCAAGTCTCCTCCCAGCTTACAAAGCTTGTGTCTTGGAGTTGTCGGCAAACATTTGGAGGATATAATCCCAGACTTGTCAGAGATTGCAATCAACTTTCCTCCAGATGTTAAGATGGCACTGGTGGCAATTGCTAGGAGGAGAAAGTTACTCGACGATGATGTTATTGTCTCTTTAGCTGATCATACCTGGAAAATTCTTGACCTTTCTGCATCAGATGTTTCGGATTTCGGCTTAGCAAAAGTGGCTGAGATATGTACATCACTTGGAGCTGTTGATATTAGCCGGTGTGACAAAATTACTACTTCTGGAGTTTCTGAACTTGTGCAACATTGCCTTTCATTGGAGACGTTGAGATGCGGAGGGAGCCCAAGGAGTGACCACACTGCACGCAGGTGCTTGGATATATTTAAACCGAAGTTGAATGATGTAGAGGGAGACTCCTGGGAAGAACTGAATACTGAAGAAATTGCTAATGGTGCACAATCATTGCGTTGGCTTGTGTGGCCAAAGATTGATAAAAATTCATTGGAGGGATTTTCCTCTGAATGCCCTCGCATTATAGTAAATCCGAACCCATCACCCTTCGGATTCAGGGGAACCCAAGTTCCCAGGGAAGCATTGCCAGATATCCAGTTGGATGATTCTATTGTCAAGGATCTTGATCCCAAAACGTGGGCAGTGCGTGGTTTTACACTCAAGGCAATGCCCCCATCTCTTTCAAGCCACACGGAATTGTCAGTGGCTGAAAAGTTTAGACTTGCTTTTGAGGAAAGGGATAATCGGTTAGCTCCAAAGCGAGCTAAAAATGCAAGGCAACATCAGCGGCGTGCTGAGAGGGAGTGGGTGATGACGGATACAACAGCTAAGGCAGTAGCTTTAGCCTCACGAGCGAGCAGATCTCTACACAGTTGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

348

Amino Acids

38.63

Weight (kDa)

8.14

Isoelectric Point (pI)

52.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26980
fragaria_vesca FvH4_3g22820
malus_domestica MD11G1217200.v1.1
prunus_persica Prupe.4G214500_v2.0.a1
pyrus_communis pycom11g19110
rosa_chinensis RchiOBHm_Chr5g0040061
rosa_laevigata RLG00000033953
rosa_multiflora Rmu_sc0000103.1_g000059 Rmu_sc0000247.1_g000015
rosa_roxburghii Rroxscaffold_1G00041220
rosa_rugosa Rorug05G0183100
rosa_samantha Rh5AG269600 Rh5BG273300 Rh5CG306200 Rh5DG257100 Rh5DG281400
rosa_wichuraiana Rw5G025220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 507
Acc36I ACCTGC 1 cut(s) 507
AccB7I CCANNNNNTGG 1 cut(s) 798
AciI CCGC 2 cut(s) 483, 949
AclWI GGATC 3 cut(s) 60, 782, 789
AcoI YGGCCR 1 cut(s) 629
AcsI RAATTY 4 cut(s) 34, 58, 318, 646
AcuI CTGAAG 1 cut(s) 606
AfaI GTAC 1 cut(s) 382
AfiI CCNNNNNNNGG 3 cut(s) 108, 466, 798
AgsI TTSAA 5 cut(s) 43, 58, 119, 547, 846
AjnI CCWGG 3 cut(s) 311, 566, 734
AleI CACNNNNGTG 1 cut(s) 517
AloI GAACNNNNNNTCC 4 cut(s) 714, 715, 746, 747
AluBI AGCT 9 cut(s) 115, 141, 150, 302, 395, 914, 926, 989, 1001
AluI AGCT 9 cut(s) 115, 141, 150, 302, 395, 914, 926, 989, 1001
Alw21I GWGCWC 1 cut(s) 607
Alw26I GTCTC 4 cut(s) 135, 298, 464, 555
Alw44I GTGCAC 1 cut(s) 603
AlwI GGATC 3 cut(s) 60, 782, 789
AlwNI CAGNNNCTG 1 cut(s) 869
AoxI GGCC 1 cut(s) 629
ApaLI GTGCAC 1 cut(s) 603
ApeKI GCWGC 1 cut(s) 112
ApoI RAATTY 4 cut(s) 34, 58, 318, 646
ArsI GACNNNNNNTTYG 2 cut(s) 139, 171
AspS9I GGNCC 1 cut(s) 123
AsuHPI GGTGA 2 cut(s) 696, 982
AvaII GGWCC 1 cut(s) 123
BaeGI GKGCMC 1 cut(s) 607
BalI TGGCCA 1 cut(s) 631
BanII GRGCYC 1 cut(s) 494
BauI CACGAG 1 cut(s) 1011
Bbv12I GWGCWC 1 cut(s) 607
BbvI GCAGC 1 cut(s) 124
BccI CCATC 3 cut(s) 232, 709, 844
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 3 cut(s) 313, 568, 736
BciVI GTATCC 1 cut(s) 973
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 4 cut(s) 135, 298, 464, 555
BfaI CTAG 2 cut(s) 258, 1042
BfuAI ACCTGC 1 cut(s) 507
BfuI GTATCC 1 cut(s) 973
BglII AGATCT 1 cut(s) 1022
BisI GCNGC 2 cut(s) 113, 950
BlpI GCTNAGC 1 cut(s) 358
BlsI GCNGC 2 cut(s) 114, 951
Bme1390I CCNGG 3 cut(s) 313, 568, 736
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 123
BmiI GGNNCC 2 cut(s) 491, 724
BmrFI CCNGG 3 cut(s) 313, 568, 736
BmsI GCATC 2 cut(s) 344, 470
BplI GAGNNNNNCTC 4 cut(s) 548, 580, 1009, 1041
BpmI CTGGAG 3 cut(s) 88, 210, 453
Bpu10I CCTNAGC 1 cut(s) 990
Bpu1102I GCTNAGC 1 cut(s) 358
BpuEI CTTGAG 1 cut(s) 806
BsaBI GATNNNNATC 2 cut(s) 212, 786
BsaJI CCNNGG 4 cut(s) 494, 567, 734, 735
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 466, 798
Bse118I RCCGGY 1 cut(s) 408
Bse1I ACTGG 2 cut(s) 249, 757
Bse3DI GCAATG 4 cut(s) 454, 611, 743, 834
Bse8I GATNNNNATC 2 cut(s) 212, 786
BseBI CCWGG 3 cut(s) 313, 568, 736
BseDI CCNNGG 4 cut(s) 494, 567, 734, 735
BseGI GGATG 1 cut(s) 769
BseJI GATNNNNATC 2 cut(s) 212, 786
BseLI CCNNNNNNNGG 3 cut(s) 108, 466, 798
BseMI GCAATG 4 cut(s) 454, 611, 743, 834
BseMII CTCAG 2 cut(s) 363, 948
BseNI ACTGG 2 cut(s) 249, 757
BseRI GAGGAG 2 cut(s) 123, 277
BseSI GKGCMC 1 cut(s) 607
BseXI GCAGC 1 cut(s) 124
BseYI CCCAGC 1 cut(s) 137
BsgI GTGCAG 1 cut(s) 495
BshFI GGCC 1 cut(s) 631
BsiHKAI GWGCWC 1 cut(s) 607
BsiSI CCGG 1 cut(s) 409
BslI CCNNNNNNNGG 3 cut(s) 108, 466, 798
BsmAI GTCTC 4 cut(s) 135, 298, 464, 555
BsmBI CGTCTC 1 cut(s) 464
BsmI GAATGC 1 cut(s) 677
BsnI GGCC 1 cut(s) 631
Bsp1286I GDGCHC 2 cut(s) 494, 607
Bsp1407I TGTACA 1 cut(s) 380
Bsp143I GATC 5 cut(s) 65, 304, 781, 787, 1022
Bsp1720I GCTNAGC 1 cut(s) 358
BspACI CCGC 2 cut(s) 483, 949
BspANI GGCC 1 cut(s) 631
BspCNI CTCAG 2 cut(s) 364, 949
BspLI GGNNCC 2 cut(s) 491, 724
BspMI ACCTGC 1 cut(s) 507
BspPI GGATC 3 cut(s) 60, 782, 789
BsrDI GCAATG 4 cut(s) 454, 611, 743, 834
BsrFI RCCGGY 1 cut(s) 408
BsrGI TGTACA 1 cut(s) 380
BsrI ACTGG 2 cut(s) 249, 757
BssAI RCCGGY 1 cut(s) 408
BssECI CCNNGG 4 cut(s) 494, 567, 734, 735
BssMI GATC 5 cut(s) 65, 304, 781, 787, 1022
BssSI CACGAG 1 cut(s) 1011
BssT1I CCWWGG 1 cut(s) 494
Bst2BI CACGAG 1 cut(s) 1011
Bst2UI CCWGG 3 cut(s) 313, 568, 736
Bst4CI ACNGT 1 cut(s) 1034
BstAUI TGTACA 1 cut(s) 380
BstC8I GCNNGC 4 cut(s) 514, 924, 954, 1018
BstDEI CTNAG 4 cut(s) 358, 372, 957, 990
BstENI CCTNNNNNAGG 1 cut(s) 106
BstF5I GGATG 1 cut(s) 769
BstKTI GATC 5 cut(s) 68, 307, 784, 790, 1025
BstMAI GTCTC 4 cut(s) 135, 298, 464, 555
BstMBI GATC 5 cut(s) 65, 304, 781, 787, 1022
BstNI CCWGG 3 cut(s) 313, 568, 736
BstSCI CCNGG 3 cut(s) 311, 566, 734
BstSLI GKGCMC 1 cut(s) 607
BstV1I GCAGC 1 cut(s) 124
BstX2I RGATCY 3 cut(s) 65, 781, 1022
BstYI RGATCY 3 cut(s) 65, 781, 1022
BsuI GTATCC 1 cut(s) 973
BsuRI GGCC 1 cut(s) 631
BtsCI GGATG 1 cut(s) 769
BtsI GCAGTG 2 cut(s) 507, 810
BtsIMutI CAGTG 4 cut(s) 242, 507, 810, 870
BveI ACCTGC 1 cut(s) 507
Cac8I GCNNGC 4 cut(s) 514, 924, 954, 1018
CaiI CAGNNNCTG 1 cut(s) 869
Cfr10I RCCGGY 1 cut(s) 408
Cfr13I GGNCC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 381
CviQI GTAC 1 cut(s) 381
DdeI CTNAG 4 cut(s) 358, 372, 957, 990
DpnI GATC 5 cut(s) 67, 306, 783, 789, 1024
DpnII GATC 5 cut(s) 65, 304, 781, 787, 1022
DraI TTTAAA 1 cut(s) 535
EaeI YGGCCR 1 cut(s) 629
Eco130I CCWWGG 1 cut(s) 494
Eco24I GRGCYC 1 cut(s) 494
Eco32I GATATC 1 cut(s) 754
Eco47I GGWCC 1 cut(s) 123
Eco57I CTGAAG 1 cut(s) 606
EcoNI CCTNNNNNAGG 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 58
EcoRII CCWGG 3 cut(s) 311, 566, 734
EcoRV GATATC 1 cut(s) 754
EcoT14I CCWWGG 1 cut(s) 494
EcoT38I GRGCYC 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 494
Esp3I CGTCTC 1 cut(s) 464
FaiI YATR 5 cut(s) 188, 309, 379, 530, 686
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 113, 950
FokI GGATG 1 cut(s) 776
FriOI GRGCYC 1 cut(s) 494
Fsp4HI GCNGC 2 cut(s) 113, 950
FspBI CTAG 2 cut(s) 258, 1042
GluI GCNGC 2 cut(s) 113, 950
GsaI CCCAGC 1 cut(s) 141
GsuI CTGGAG 3 cut(s) 88, 210, 453
HaeIII GGCC 1 cut(s) 631
HapII CCGG 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 148
HinfI GANTC 3 cut(s) 563, 714, 767
HpaII CCGG 1 cut(s) 409
HphI GGTGA 2 cut(s) 696, 982
Hpy166II GTNNAC 1 cut(s) 605
Hpy188I TCNGA 7 cut(s) 205, 340, 349, 442, 670, 696, 713
Hpy188III TCNNGA 7 cut(s) 63, 105, 227, 323, 432, 785, 1011
Hpy8I GTNNAC 1 cut(s) 605
Hpy99I CGWCG 2 cut(s) 23, 281
HpyAV CCTTC 2 cut(s) 102, 718
HpyCH4III ACNGT 1 cut(s) 1034
HpyCH4IV ACGT 2 cut(s) 473, 797
HpyCH4V TGCA 7 cut(s) 32, 212, 335, 451, 512, 605, 935
HpyF3I CTNAG 4 cut(s) 358, 372, 957, 990
HpySE526I ACGT 2 cut(s) 473, 797
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 5 cut(s) 65, 304, 781, 787, 1022
LmnI GCTCC 3 cut(s) 392, 489, 919
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 2 cut(s) 344, 470
MaeI CTAG 2 cut(s) 258, 1042
MaeII ACGT 2 cut(s) 473, 797
MaeIII GTNAC 3 cut(s) 270, 413, 500
MalI GATC 5 cut(s) 67, 306, 783, 789, 1024
MboI GATC 5 cut(s) 65, 304, 781, 787, 1022
MboII GAAGA 2 cut(s) 584, 599
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 3 cut(s) 65, 781, 1022
MhlI GDGCHC 2 cut(s) 494, 607
MlsI TGGCCA 1 cut(s) 631
MluCI AATT 9 cut(s) 34, 46, 58, 252, 318, 420, 591, 646, 857
MluNI TGGCCA 1 cut(s) 631
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 2 cut(s) 741, 1016
Mox20I TGGCCA 1 cut(s) 631
MscI TGGCCA 1 cut(s) 631
MseI TTAA 2 cut(s) 234, 534
MslI CAYNNNNRTG 1 cut(s) 517
Msp20I TGGCCA 1 cut(s) 631
MspA1I CMGCKG 1 cut(s) 949
MspI CCGG 1 cut(s) 409
MspR9I CCNGG 3 cut(s) 313, 568, 736
MunI CAATTG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 677
MvaI CCWGG 3 cut(s) 313, 568, 736
NdeII GATC 5 cut(s) 65, 304, 781, 787, 1022
NlaIV GGNNCC 2 cut(s) 491, 724
NmuCI GTSAC 2 cut(s) 413, 500
OliI CACNNNNGTG 1 cut(s) 517
PaqCI CACCTGC 1 cut(s) 507
PasI CCCWGGG 1 cut(s) 735
PctI GAATGC 1 cut(s) 677
PfeI GAWTC 2 cut(s) 714, 767
PflFI GACNNNGTC 1 cut(s) 127
PflMI CCANNNNNTGG 1 cut(s) 798
PkrI GCNGC 2 cut(s) 114, 951
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
Psp6I CCWGG 3 cut(s) 311, 566, 734
PspFI CCCAGC 1 cut(s) 137
PspGI CCWGG 3 cut(s) 311, 566, 734
PspN4I GGNNCC 2 cut(s) 491, 724
PspPI GGNCC 1 cut(s) 123
PstNI CAGNNNCTG 1 cut(s) 869
PsuI RGATCY 3 cut(s) 65, 781, 1022
PsyI GACNNNGTC 1 cut(s) 127
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
RseI CAYNNNNRTG 1 cut(s) 517
SaqAI TTAA 2 cut(s) 234, 534
SatI GCNGC 2 cut(s) 113, 950
Sau3AI GATC 5 cut(s) 65, 304, 781, 787, 1022
Sau96I GGNCC 1 cut(s) 123
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 3 cut(s) 313, 568, 736
SduI GDGCHC 2 cut(s) 494, 607
SfaNI GCATC 2 cut(s) 344, 470
SinI GGWCC 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 517
SmlI CTYRAG 1 cut(s) 821
SmoI CTYRAG 1 cut(s) 821
Sse9I AATT 9 cut(s) 34, 46, 58, 252, 318, 420, 591, 646, 857
SsiI CCGC 2 cut(s) 483, 949
SspMI CTAG 2 cut(s) 258, 1042
StyD4I CCNGG 3 cut(s) 311, 566, 734
StyI CCWWGG 1 cut(s) 494
TaaI ACNGT 1 cut(s) 1034
TaiI ACGT 2 cut(s) 476, 800
TaqI TCGA 1 cut(s) 276
TasI AATT 9 cut(s) 34, 46, 58, 252, 318, 420, 591, 646, 857
TatI WGTACW 1 cut(s) 380
TauI GCSGC 1 cut(s) 952
TfiI GAWTC 2 cut(s) 714, 767
Tru1I TTAA 2 cut(s) 234, 534
Tru9I TTAA 2 cut(s) 234, 534
TscAI CASTG 4 cut(s) 249, 514, 810, 870
TseFI GTSAC 2 cut(s) 413, 500
TseI GCWGC 1 cut(s) 112
Tsp45I GTSAC 2 cut(s) 413, 500
TspDTI ATGAA 2 cut(s) 453, 639
TspGWI ACGGA 2 cut(s) 869, 992
TspRI CASTG 4 cut(s) 249, 514, 810, 870
Tth111I GACNNNGTC 1 cut(s) 127
Van91I CCANNNNNTGG 1 cut(s) 798
VneI GTGCAC 1 cut(s) 603
VpaK11BI GGWCC 1 cut(s) 123
XagI CCTNNNNNAGG 1 cut(s) 106
XapI RAATTY 4 cut(s) 34, 58, 318, 646
XspI CTAG 2 cut(s) 258, 1042
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.