pycom11g19110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0014051
Physical Location & Seq
Reverse (-)
21382488 .. 21385285
2798 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g19110.6

Sequence Viewer

Length: 1044 bp
ATGGAAAAAGGAAGAGCCATCGCTTCGATTACGAATTCGTTGAACAAGTTGGATTTGATTTCCAAATCCAATCCCAGCCCCCAAATCCCTCCAATCCAATCCTCCAGAACACAGCTTGAAAGGGCCAAGACTCCTCCGAGTTTACAAAGTTTGTGTATCGGAATCGTCGGCAGGCATTTGGAGGATATCATCCCCGACTTGGCCGAGATTGCATTTAACTTTCCGCCGGATATAAAGGTGGCACTGGTGGCAATTGCCAGAAGAAGAAAGTTACTCGACGACGATGTTATTGTCTCTTTGGCTGATCACACATGGAAAAGTCTTGACCTTTCGGCATCAGATGTTTCGGATTTTGGGTTAGCAAAAGTGGCCGAGATATGTGGGTCACTTCAAGCTGTTGATATTAGTCGGTGTGACAAAATCACTGCTGCTGGAGTTTCTGAACTTGTGCAGCGTTGCCAATCATTGGAGACGTTGAGATGCGGAGGGAGCCCTAGGAGTGACCACACTGCACGCAGGTGCTTGGATGTATTTAAACCGAAGTTGAATGATGTAGAGGGAGATTCCTGGGAAGAACTGAATACTGCAGAAATTGTGAATGGTGCAGAGTCATTGCGTTGGCTTGTATGGCCAAAGATTGATAATGATTCTCTTGAGGGATTTGCCACCGAATGCCCGCGCATTACAGTAAATCCAAAGCCATCACCCTTCGGATTAAGGGGAACCCAAGTTCCCAGGGAGGCATTCCCAGACATCCAATTGGATGATTCTGTTGTCAAGGATATTGATCCCAAAACATGGGCGGTGCGTGGTTTTACACCAAAGGCAATACATTCATCTCTTTCCAGCTCCGTGGAGTTGTCTGTGGCTGAAAAGTTTAGACGTGCATTTGAGGAAAGGGATACTCGGTTAGCCCCCAAGAGAGCCAAAAATGCAAGGCAGCATCAGCGACGTGCGGAGAGAGACTGGGTGATGACGGATACCAGAGCAAAGGCAGTCGCTCTAGCCTCACGAGCGAGCAGATCTCTACACAGTTGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

348

Amino Acids

38.44

Weight (kDa)

8.44

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26980
fragaria_vesca FvH4_3g22820
malus_domestica MD11G1217200.v1.1
prunus_persica Prupe.4G214500_v2.0.a1
pyrus_communis pycom11g19110
rosa_chinensis RchiOBHm_Chr5g0040061
rosa_laevigata RLG00000033953
rosa_multiflora Rmu_sc0000103.1_g000059 Rmu_sc0000247.1_g000015
rosa_roxburghii Rroxscaffold_1G00041220
rosa_rugosa Rorug05G0183100
rosa_samantha Rh5AG269600 Rh5BG273300 Rh5CG306200 Rh5DG257100 Rh5DG281400
rosa_wichuraiana Rw5G025220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 507
Acc36I ACCTGC 1 cut(s) 507
AccB7I CCANNNNNTGG 2 cut(s) 466, 798
AccII CGCG 1 cut(s) 679
AciI CCGC 5 cut(s) 224, 483, 677, 803, 956
AclWI GGATC 1 cut(s) 782
AcoI YGGCCR 3 cut(s) 201, 369, 629
AcsI RAATTY 1 cut(s) 34
AfiI CCNNNNNNNGG 3 cut(s) 199, 466, 798
AgsI TTSAA 4 cut(s) 43, 119, 392, 547
AjiI CACGTC 2 cut(s) 884, 953
AjnI CCWGG 2 cut(s) 566, 734
AleI CACNNNNGTG 1 cut(s) 517
AloI GAACNNNNNNTCC 4 cut(s) 714, 715, 746, 747
AluBI AGCT 3 cut(s) 115, 395, 849
AluI AGCT 3 cut(s) 115, 395, 849
Alw26I GTCTC 3 cut(s) 298, 464, 957
AlwI GGATC 1 cut(s) 782
AoxI GGCC 4 cut(s) 123, 201, 369, 629
ApeKI GCWGC 3 cut(s) 428, 451, 940
ApoI RAATTY 1 cut(s) 34
AspA2I CCTAGG 1 cut(s) 494
AspLEI GCGC 1 cut(s) 681
AspS9I GGNCC 1 cut(s) 123
AsuHPI GGTGA 2 cut(s) 696, 982
AvrII CCTAGG 1 cut(s) 494
BalI TGGCCA 1 cut(s) 631
BanII GRGCYC 1 cut(s) 494
BauI CACGAG 1 cut(s) 1011
BbvI GCAGC 3 cut(s) 415, 463, 952
BccI CCATC 2 cut(s) 26, 709
BciT130I CCWGG 2 cut(s) 568, 736
BciVI GTATCC 2 cut(s) 895, 973
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 3 cut(s) 298, 464, 957
BfaI CTAG 3 cut(s) 495, 1004, 1042
BfmI CTRYAG 1 cut(s) 585
BfuAI ACCTGC 1 cut(s) 507
BfuI GTATCC 2 cut(s) 895, 973
BglII AGATCT 1 cut(s) 1022
BisI GCNGC 3 cut(s) 429, 452, 941
BlnI CCTAGG 1 cut(s) 494
BlsI GCNGC 3 cut(s) 430, 453, 942
Bme1390I CCNGG 2 cut(s) 568, 736
BmgBI CACGTC 2 cut(s) 884, 953
BmgT120I GGNCC 1 cut(s) 123
BmiI GGNNCC 2 cut(s) 491, 724
BmrFI CCNGG 2 cut(s) 568, 736
BmrI ACTGGG 1 cut(s) 976
BmsI GCATC 3 cut(s) 344, 470, 952
BmuI ACTGGG 1 cut(s) 976
BplI GAGNNNNNCTC 2 cut(s) 1009, 1041
BpmI CTGGAG 2 cut(s) 88, 453
BpuEI CTTGAG 1 cut(s) 674
BsaBI GATNNNNATC 1 cut(s) 786
BsaJI CCNNGG 5 cut(s) 494, 567, 734, 735, 852
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 466, 798
Bse1I ACTGG 2 cut(s) 249, 971
Bse3DI GCAATG 1 cut(s) 611
Bse8I GATNNNNATC 1 cut(s) 786
BseBI CCWGG 2 cut(s) 568, 736
BseDI CCNNGG 5 cut(s) 494, 567, 734, 735, 852
BseGI GGATG 4 cut(s) 189, 532, 753, 769
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 3 cut(s) 199, 466, 798
BseMI GCAATG 1 cut(s) 611
BseNI ACTGG 2 cut(s) 249, 971
BseRI GAGGAG 1 cut(s) 123
BseXI GCAGC 3 cut(s) 415, 463, 952
BseYI CCCAGC 1 cut(s) 74
BsgI GTGCAG 3 cut(s) 470, 495, 624
Bsh1236I CGCG 1 cut(s) 679
BshFI GGCC 4 cut(s) 125, 203, 371, 631
BsiSI CCGG 1 cut(s) 227
BslI CCNNNNNNNGG 3 cut(s) 199, 466, 798
BsmAI GTCTC 3 cut(s) 298, 464, 957
BsmBI CGTCTC 1 cut(s) 464
BsmI GAATGC 2 cut(s) 677, 743
BsnI GGCC 4 cut(s) 125, 203, 371, 631
Bsp1286I GDGCHC 1 cut(s) 494
Bsp143I GATC 3 cut(s) 304, 787, 1022
BspACI CCGC 5 cut(s) 224, 483, 677, 803, 956
BspANI GGCC 4 cut(s) 125, 203, 371, 631
BspFNI CGCG 1 cut(s) 679
BspLI GGNNCC 2 cut(s) 491, 724
BspMAI CTGCAG 1 cut(s) 589
BspMI ACCTGC 1 cut(s) 507
BspPI GGATC 1 cut(s) 782
BspQI GCTCTTC 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 611
BsrI ACTGG 2 cut(s) 249, 971
BssECI CCNNGG 5 cut(s) 494, 567, 734, 735, 852
BssMI GATC 3 cut(s) 304, 787, 1022
BssSI CACGAG 1 cut(s) 1011
BssT1I CCWWGG 1 cut(s) 494
Bst2BI CACGAG 1 cut(s) 1011
Bst2UI CCWGG 2 cut(s) 568, 736
Bst4CI ACNGT 2 cut(s) 688, 1034
Bst6I CTCTTC 1 cut(s) 7
BstC8I GCNNGC 4 cut(s) 173, 514, 677, 1018
BstDSI CCRYGG 1 cut(s) 852
BstF5I GGATG 4 cut(s) 189, 532, 753, 769
BstFNI CGCG 1 cut(s) 679
BstHHI GCGC 1 cut(s) 681
BstKTI GATC 3 cut(s) 307, 790, 1025
BstMAI GTCTC 3 cut(s) 298, 464, 957
BstMBI GATC 3 cut(s) 304, 787, 1022
BstMWI GCNNNNNNNGC 8 cut(s) 209, 248, 368, 489, 628, 932, 946, 1013
BstNI CCWGG 2 cut(s) 568, 736
BstSCI CCNGG 2 cut(s) 566, 734
BstSFI CTRYAG 1 cut(s) 585
BstUI CGCG 1 cut(s) 679
BstV1I GCAGC 3 cut(s) 415, 463, 952
BstX2I RGATCY 1 cut(s) 1022
BstXI CCANNNNNNTGG 1 cut(s) 853
BstYI RGATCY 1 cut(s) 1022
BsuI GTATCC 2 cut(s) 895, 973
BsuRI GGCC 4 cut(s) 125, 203, 371, 631
BtgI CCRYGG 1 cut(s) 852
BtgZI GCGATG 1 cut(s) 4
BtrI CACGTC 2 cut(s) 884, 953
BtsCI GGATG 4 cut(s) 189, 532, 753, 769
BtsI GCAGTG 2 cut(s) 423, 507
BtsIMutI CAGTG 3 cut(s) 242, 423, 507
BveI ACCTGC 1 cut(s) 507
Cac8I GCNNGC 4 cut(s) 173, 514, 677, 1018
CfoI GCGC 1 cut(s) 681
Cfr13I GGNCC 1 cut(s) 123
CviAII CATG 2 cut(s) 312, 798
DpnI GATC 3 cut(s) 306, 789, 1024
DpnII GATC 3 cut(s) 304, 787, 1022
DraI TTTAAA 1 cut(s) 535
EaeI YGGCCR 3 cut(s) 201, 369, 629
Eam1104I CTCTTC 1 cut(s) 7
EarI CTCTTC 1 cut(s) 7
EciI GGCGGA 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 494
Eco24I GRGCYC 1 cut(s) 494
Eco32I GATATC 1 cut(s) 187
EcoRI GAATTC 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 566, 734
EcoRV GATATC 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 494
EcoT38I GRGCYC 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 494
Esp3I CGTCTC 1 cut(s) 464
FaeI CATG 2 cut(s) 315, 801
FaiI YATR 5 cut(s) 233, 313, 379, 628, 799
FatI CATG 2 cut(s) 311, 797
FauI CCCGC 1 cut(s) 684
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 3 cut(s) 429, 452, 941
FokI GGATG 4 cut(s) 176, 539, 740, 776
FriOI GRGCYC 1 cut(s) 494
Fsp4HI GCNGC 3 cut(s) 429, 452, 941
FspBI CTAG 3 cut(s) 495, 1004, 1042
GlaI GCGC 1 cut(s) 680
GluI GCNGC 3 cut(s) 429, 452, 941
GsaI CCCAGC 1 cut(s) 78
GsuI CTGGAG 2 cut(s) 88, 453
HaeIII GGCC 4 cut(s) 125, 203, 371, 631
HapII CCGG 1 cut(s) 227
HhaI GCGC 1 cut(s) 681
Hin1II CATG 2 cut(s) 315, 801
Hin6I GCGC 1 cut(s) 679
HinP1I GCGC 1 cut(s) 679
HinfI GANTC 6 cut(s) 130, 162, 563, 608, 647, 767
HpaII CCGG 1 cut(s) 227
HphI GGTGA 2 cut(s) 696, 982
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 6 cut(s) 138, 161, 340, 349, 442, 713
Hpy188III TCNNGA 4 cut(s) 105, 323, 653, 1011
Hpy8I GTNNAC 1 cut(s) 143
Hpy99I CGWCG 4 cut(s) 170, 281, 284, 954
HpyAV CCTTC 1 cut(s) 718
HpyCH4III ACNGT 2 cut(s) 688, 1034
HpyCH4IV ACGT 3 cut(s) 473, 883, 952
HpyCH4V TGCA 7 cut(s) 212, 451, 512, 587, 605, 887, 935
HpyF10VI GCNNNNNNNGC 8 cut(s) 209, 248, 368, 489, 628, 932, 946, 1013
HpySE526I ACGT 3 cut(s) 473, 883, 952
Hsp92II CATG 2 cut(s) 315, 801
HspAI GCGC 1 cut(s) 679
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 3 cut(s) 304, 787, 1022
LguI GCTCTTC 1 cut(s) 7
LmnI GCTCC 2 cut(s) 489, 854
Lsp1109I GCAGC 3 cut(s) 415, 463, 952
LweI GCATC 3 cut(s) 344, 470, 952
MaeI CTAG 3 cut(s) 495, 1004, 1042
MaeII ACGT 3 cut(s) 473, 883, 952
MaeIII GTNAC 4 cut(s) 270, 384, 413, 500
MalI GATC 3 cut(s) 306, 789, 1024
MboI GATC 3 cut(s) 304, 787, 1022
MboII GAAGA 4 cut(s) 24, 273, 276, 584
MfeI CAATTG 2 cut(s) 252, 758
MflI RGATCY 1 cut(s) 1022
MhlI GDGCHC 1 cut(s) 494
MlsI TGGCCA 1 cut(s) 631
MluCI AATT 4 cut(s) 34, 252, 591, 758
MluNI TGGCCA 1 cut(s) 631
MlyI GAGTC 2 cut(s) 124, 617
MmeI TCCRAC 2 cut(s) 30, 1016
Mox20I TGGCCA 1 cut(s) 631
MscI TGGCCA 1 cut(s) 631
MseI TTAA 3 cut(s) 216, 534, 716
MslI CAYNNNNRTG 1 cut(s) 517
Msp20I TGGCCA 1 cut(s) 631
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 568, 736
MunI CAATTG 2 cut(s) 252, 758
Mva1269I GAATGC 2 cut(s) 677, 743
MvaI CCWGG 2 cut(s) 568, 736
MvnI CGCG 1 cut(s) 679
MwoI GCNNNNNNNGC 8 cut(s) 209, 248, 368, 489, 628, 932, 946, 1013
NdeII GATC 3 cut(s) 304, 787, 1022
NlaIII CATG 2 cut(s) 315, 801
NlaIV GGNNCC 2 cut(s) 491, 724
NmeAIII GCCGAG 2 cut(s) 229, 397
NmuCI GTSAC 3 cut(s) 384, 413, 500
OliI CACNNNNGTG 1 cut(s) 517
PaqCI CACCTGC 1 cut(s) 507
PasI CCCWGGG 1 cut(s) 735
PciSI GCTCTTC 1 cut(s) 7
PctI GAATGC 2 cut(s) 677, 743
PfeI GAWTC 4 cut(s) 162, 563, 647, 767
PflMI CCANNNNNTGG 2 cut(s) 466, 798
PkrI GCNGC 3 cut(s) 430, 453, 942
PleI GAGTC 2 cut(s) 124, 616
PpsI GAGTC 2 cut(s) 124, 616
Psp6I CCWGG 2 cut(s) 566, 734
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 2 cut(s) 566, 734
PspN4I GGNNCC 2 cut(s) 491, 724
PspPI GGNCC 1 cut(s) 123
PstI CTGCAG 1 cut(s) 589
PsuI RGATCY 1 cut(s) 1022
RseI CAYNNNNRTG 1 cut(s) 517
SapI GCTCTTC 1 cut(s) 7
SaqAI TTAA 3 cut(s) 216, 534, 716
SatI GCNGC 3 cut(s) 429, 452, 941
Sau3AI GATC 3 cut(s) 304, 787, 1022
Sau96I GGNCC 1 cut(s) 123
SchI GAGTC 2 cut(s) 124, 617
ScrFI CCNGG 2 cut(s) 568, 736
SduI GDGCHC 1 cut(s) 494
SetI ASST 9 cut(s) 117, 240, 330, 397, 476, 521, 851, 886, 955
SfaNI GCATC 3 cut(s) 344, 470, 952
SfcI CTRYAG 1 cut(s) 585
SmiMI CAYNNNNRTG 1 cut(s) 517
SmlI CTYRAG 1 cut(s) 653
SmoI CTYRAG 1 cut(s) 653
Sse9I AATT 4 cut(s) 34, 252, 591, 758
SsiI CCGC 5 cut(s) 224, 483, 677, 803, 956
SspMI CTAG 3 cut(s) 495, 1004, 1042
StyD4I CCNGG 2 cut(s) 566, 734
StyI CCWWGG 1 cut(s) 494
TaaI ACNGT 2 cut(s) 688, 1034
TaiI ACGT 3 cut(s) 476, 886, 955
TaqI TCGA 2 cut(s) 26, 276
TasI AATT 4 cut(s) 34, 252, 591, 758
TfiI GAWTC 4 cut(s) 162, 563, 647, 767
Tru1I TTAA 3 cut(s) 216, 534, 716
Tru9I TTAA 3 cut(s) 216, 534, 716
TscAI CASTG 3 cut(s) 249, 430, 514
TseFI GTSAC 3 cut(s) 384, 413, 500
TseI GCWGC 3 cut(s) 428, 451, 940
Tsp45I GTSAC 3 cut(s) 384, 413, 500
TspDTI ATGAA 1 cut(s) 825
TspGWI ACGGA 2 cut(s) 841, 992
TspRI CASTG 3 cut(s) 249, 430, 514
Van91I CCANNNNNTGG 2 cut(s) 466, 798
XapI RAATTY 1 cut(s) 34
XmaJI CCTAGG 1 cut(s) 494
XspI CTAG 3 cut(s) 495, 1004, 1042
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.