AT4G27260

Indole-3-acetic acid-amido synthetase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
13653579 .. 13656285
2707 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G27260.1

Sequence Viewer

Length: 1839 bp
ATGCCTGAGGCACCAAAGAAAGAATCTTTAGAGGTTTTCGATCTGACGCTTGACCAAAAAAACAAGCAAAAGCTTCAGTTGATCGAAGAACTCACCTCTAACGCCGACCAAGTCCAAAGACAAGTCTTGGAGGAGATCTTGACCCGCAATGCTGACGTGGAGTATCTCAGGCGACACGACCTCAACGGTCGCACTGACCGTGAGACTTTCAAAAACATCATGCCCGTTATCACCTACGAAGATATTGAGCCTGAGATCAACAGGATCGCTAATGGTGATAAATCACCTATCCTCTCTTCCAAACCCATCTCTGAGTTCCTCACAAGCTCTGGGACATCTGGTGGGGAGAGGAAGCTAATGCCAACAATCGAAGAGGAGCTAGACAGGAGATCACTCCTCTACAGTCTCTTGATGCCTGTGATGAGCCAGTTCGTTCCTGGTCTCGAAAACGGCAAAGGAATGTATTTCTTGTTCATCAAGTCCGAATCCAAGACTCCAGGAGGCCTCCCTGCTCGTCCTGTCTTAACCAGTTACTACAAATCTTCCCATTTCAAAGAAAGACCCTATGATCCTTACACCAACTACACAAGCCCTAACGAGACCATCCTTTGCTCTGACTCTTACCAGAGCATGTACTCTCAGATGCTTTGTGGCTTATGTCAACACCAGGAGGTTCTTAGAGTCGGCGCTGTCTTCGCCTCTGGATTCATCAGAGCCATCAAGTTTCTTGAGAAACACTGGATCGAGTTGGTCCGTGACATCAGAACCGGGACTCTAAGTTCCCTGATCACCGATCCTTCAGTGCGTGAGGCGGTCGCCAAGATCCTTAAACCGAGCCCAAAGCTAGCTGATTTCGTGGAATTTGAGTGCAAGAAGTCGTCCTGGCAAGGGATTATTACTAGGCTGTGGCCTAACACAAAGTATGTGGATGTGATTGTGACCGGGACAATGTCTCAATACATTCCAACTTTGGACTACTACAGTAATGGCTTGCCTCTTGTCTGCACAATGTATGCTTCCTCTGAGTGTTACTTTGGTGTGAATCTAAGGCCACTCTGCAAACCAAGCGAGGTCTCTTACACGCTCATACCATCCATGGCTTATTTCGAGTTCTTGCCTGTTCATAGAAACAACGGTGTTACTAACTCCATCAACCTTCCTAAAGCACTCACTGAGAAAGAGCAACAAGAGCTTGTTGATCTAGTTGATGTCAAGCTTGGTCAGGAATACGAGCTTGTTGTCACCACTTACGCCGGGCTTTGCAGATACAGAGTTGGTGATTTATTGAGAGTGACTGGTTTCAAGAACAAAGCGCCTCAATTCAGTTTCATATGTCGCAAAAATGTGGTCTTGAGCATAGATTCCGACAAGACCGACGAGGTTGAGCTTCAGAACGCGGTGAAGAACGCAGTGACACACCTTGTCCCATTTGATGCCTCACTCTCTGAGTACACGAGCTATGCAGACACAAGTTCCATCCCAGGCCATTATGTCCTGTTTTGGGAGCTATGTTTGGATGGAAACACACCGATCCCTCCTTCGGTCTTCGAGGACTGCTGCTTAGCTGTAGAAGAGTCATTCAACACTGTTTATAGACAAGGAAGGGTTAGTGACAAGTCCATAGGCCCGCTTGAGATCAAGATTGTTGAGCCAGGGACATTCGATAAGCTCATGGATTACGCAATCAGCTTGGGAGCATCGATTAATCAGTATAAGACGCCGAGATGCGTGAAGTTTGCTCCAATTATCGAGCTATTGAACTCAAGGGTTGTTGATAGTTACTTCAGCCCCAAGTGTCCTAAATGGGTTCCTGGTCACAAACAGTGGGGGAGTAACTAA

Protein Analysis

612

Amino Acids

69.28

Weight (kDa)

5.72

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GH3 PF03321 25 - 333 3.6e-126 GH3 family N-terminal domain
GH3_M PF23571 360 - 446 8.6e-30 GH3 family central domain
GH3_C PF23572 462 - 579 3.1e-38 GH3 family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015833)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27260 AT5G54510
fragaria_vesca FvH4_3g21460
malus_domestica MD03G1215800.v1.1 MD11G1230400.v1.1
prunus_persica Prupe.4G197000_v2.0.a1
pyrus_communis pycom03g16410 pycom11g20410
rosa_chinensis RchiOBHm_Chr5g0036891
rosa_laevigata RLG00000033732
rosa_multiflora Rmu_sc0007663.1_g000004
rosa_roxburghii Rroxscaffold_1G00044060
rosa_rugosa Rorug05G0158600
rosa_samantha Rh5CG285100
rosa_wichuraiana Rw5G023080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 10
AccII CGCG 1 cut(s) 1397
AciI CCGC 4 cut(s) 145, 812, 1397, 1628
AclWI GGATC 6 cut(s) 272, 563, 749, 788, 817, 1525
AcsI RAATTY 1 cut(s) 860
AcuI CTGAAG 4 cut(s) 59, 783, 1373, 1768
AcyI GRCGYC 1 cut(s) 1718
AfaI GTAC 2 cut(s) 635, 1451
AfiI CCNNNNNNNGG 3 cut(s) 888, 1501, 1540
AgsI TTSAA 5 cut(s) 211, 553, 1303, 1582, 1759
AjiI CACGTC 1 cut(s) 157
AjnI CCWGG 7 cut(s) 436, 496, 666, 881, 1480, 1651, 1810
AloI GAACNNNNNNTCC 2 cut(s) 763, 795
Alw26I GTCTC 6 cut(s) 197, 410, 446, 593, 957, 1078
AlwI GGATC 6 cut(s) 272, 563, 749, 788, 817, 1525
AoxI GGCC 5 cut(s) 502, 908, 1049, 1483, 1624
ApeKI GCWGC 1 cut(s) 1557
ApoI RAATTY 1 cut(s) 860
ArsI GACNNNNNNTTYG 2 cut(s) 1332, 1364
AseI ATTAAT 1 cut(s) 1704
AspLEI GCGC 2 cut(s) 689, 1315
AspS9I GGNCC 2 cut(s) 751, 1625
AsuC2I CCSGG 3 cut(s) 769, 943, 1255
AsuHPI GGTGA 8 cut(s) 85, 223, 276, 287, 781, 1234, 1289, 1411
AsuNHI GCTAGC 1 cut(s) 844
AvaII GGWCC 1 cut(s) 751
AxyI CCTNAGG 1 cut(s) 6
BanI GGYRCC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 839
BauI CACGAG 1 cut(s) 1453
BbsI GAAGAC 2 cut(s) 685, 1537
BbvI GCAGC 1 cut(s) 1544
BccI CCATC 7 cut(s) 314, 611, 725, 1099, 1157, 1484, 1511
BceAI ACGGC 1 cut(s) 466
BciT130I CCWGG 7 cut(s) 438, 498, 668, 883, 1482, 1653, 1812
BclI TGATCA 1 cut(s) 786
BcnI CCSGG 3 cut(s) 769, 943, 1255
BcoDI GTCTC 6 cut(s) 197, 410, 446, 593, 957, 1078
BfaI CTAG 4 cut(s) 380, 845, 900, 1202
BfmI CTRYAG 3 cut(s) 400, 979, 1566
BfoI RGCGCY 2 cut(s) 690, 1316
BglII AGATCT 1 cut(s) 135
BisI GCNGC 1 cut(s) 1558
BlpI GCTNAGC 1 cut(s) 1561
BlsI GCNGC 1 cut(s) 1559
Bme18I GGWCC 1 cut(s) 751
BmgBI CACGTC 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 751, 1625
BmiI GGNNCC 2 cut(s) 12, 1809
BmsI GCATC 5 cut(s) 402, 633, 1423, 1706, 1715
BmtI GCTAGC 1 cut(s) 848
BpiI GAAGAC 2 cut(s) 685, 1537
BpmI CTGGAG 1 cut(s) 480
Bpu1102I GCTNAGC 1 cut(s) 1561
BpuEI CTTGAG 4 cut(s) 749, 1372, 1652, 1747
BpuMI CCSGG 3 cut(s) 769, 943, 1255
Bsa29I ATCGAT 1 cut(s) 1700
BsaHI GRCGYC 1 cut(s) 1718
BsaI GGTCTC 3 cut(s) 446, 593, 1078
BsaJI CCNNGG 3 cut(s) 1095, 1480, 1652
Bsc4I CCNNNNNNNGG 3 cut(s) 888, 1501, 1540
Bse1I ACTGG 4 cut(s) 427, 528, 743, 1300
Bse21I CCTNAGG 1 cut(s) 6
Bse3DI GCAATG 1 cut(s) 154
BseBI CCWGG 7 cut(s) 438, 498, 668, 883, 1482, 1653, 1812
BseCI ATCGAT 1 cut(s) 1700
BseDI CCNNGG 3 cut(s) 1095, 1480, 1652
BseGI GGATG 5 cut(s) 603, 934, 1091, 1476, 1522
BseLI CCNNNNNNNGG 3 cut(s) 888, 1501, 1540
BseMI GCAATG 1 cut(s) 154
BseMII CTCAG 7 cut(s) 181, 243, 303, 653, 1014, 1164, 1437
BseNI ACTGG 4 cut(s) 427, 528, 743, 1300
BseRI GAGGAG 3 cut(s) 146, 386, 389
BseXI GCAGC 1 cut(s) 1544
BsgI GTGCAG 1 cut(s) 988
Bsh1236I CGCG 1 cut(s) 1397
Bsh1285I CGRYCG 2 cut(s) 190, 816
BshFI GGCC 5 cut(s) 504, 910, 1051, 1485, 1626
BshNI GGYRCC 1 cut(s) 10
BshVI ATCGAT 1 cut(s) 1700
BsiEI CGRYCG 2 cut(s) 190, 816
BsiSI CCGG 3 cut(s) 768, 942, 1254
BslFI GGGAC 5 cut(s) 346, 784, 958, 1409, 1669
BslI CCNNNNNNNGG 3 cut(s) 888, 1501, 1540
BsmAI GTCTC 6 cut(s) 197, 410, 446, 593, 957, 1078
BsmFI GGGAC 5 cut(s) 346, 784, 958, 1409, 1669
BsnI GGCC 5 cut(s) 504, 910, 1051, 1485, 1626
Bso31I GGTCTC 3 cut(s) 446, 593, 1078
Bsp1286I GDGCHC 1 cut(s) 839
Bsp1720I GCTNAGC 1 cut(s) 1561
Bsp19I CCATGG 1 cut(s) 1095
BspACI CCGC 4 cut(s) 145, 812, 1397, 1628
BspANI GGCC 5 cut(s) 504, 910, 1051, 1485, 1626
BspCNI CTCAG 7 cut(s) 180, 244, 304, 652, 1015, 1165, 1438
BspDI ATCGAT 1 cut(s) 1700
BspFNI CGCG 1 cut(s) 1397
BspLI GGNNCC 2 cut(s) 12, 1809
BspOI GCTAGC 1 cut(s) 848
BspPI GGATC 6 cut(s) 272, 563, 749, 788, 817, 1525
BspT107I GGYRCC 1 cut(s) 10
BspTNI GGTCTC 3 cut(s) 446, 593, 1078
BsrDI GCAATG 1 cut(s) 154
BsrI ACTGG 4 cut(s) 427, 528, 743, 1300
BssECI CCNNGG 3 cut(s) 1095, 1480, 1652
BssNI GRCGYC 1 cut(s) 1718
BssSI CACGAG 1 cut(s) 1453
BssT1I CCWWGG 1 cut(s) 1095
Bst2BI CACGAG 1 cut(s) 1453
Bst2UI CCWGG 7 cut(s) 438, 498, 668, 883, 1482, 1653, 1812
Bst4CI ACNGT 7 cut(s) 188, 200, 404, 983, 1136, 1588, 1824
Bst6I CTCTTC 3 cut(s) 301, 366, 1566
BstACI GRCGYC 1 cut(s) 1718
BstC8I GCNNGC 3 cut(s) 846, 992, 1628
BstDSI CCRYGG 1 cut(s) 1095
BstF5I GGATG 5 cut(s) 603, 934, 1091, 1476, 1522
BstFNI CGCG 1 cut(s) 1397
BstH2I RGCGCY 2 cut(s) 690, 1316
BstHHI GCGC 2 cut(s) 689, 1315
BstMAI GTCTC 6 cut(s) 197, 410, 446, 593, 957, 1078
BstMCI CGRYCG 2 cut(s) 190, 816
BstMWI GCNNNNNNNGC 3 cut(s) 695, 1065, 1189
BstNI CCWGG 7 cut(s) 438, 498, 668, 883, 1482, 1653, 1812
BstNSI RCATGY 1 cut(s) 634
BstSFI CTRYAG 3 cut(s) 400, 979, 1566
BstUI CGCG 1 cut(s) 1397
BstV1I GCAGC 1 cut(s) 1544
BstV2I GAAGAC 2 cut(s) 685, 1537
BstX2I RGATCY 2 cut(s) 135, 822
BstYI RGATCY 2 cut(s) 135, 822
Bsu15I ATCGAT 1 cut(s) 1700
Bsu36I CCTNAGG 1 cut(s) 6
BsuRI GGCC 5 cut(s) 504, 910, 1051, 1485, 1626
BsuTUI ATCGAT 1 cut(s) 1700
BtgI CCRYGG 1 cut(s) 1095
BtrI CACGTC 1 cut(s) 157
BtsCI GGATG 5 cut(s) 603, 934, 1091, 1476, 1522
BtsI GCAGTG 1 cut(s) 1416
BtsIMutI CAGTG 7 cut(s) 192, 736, 807, 1170, 1416, 1584, 1829
Cac8I GCNNGC 3 cut(s) 846, 992, 1628
CfoI GCGC 2 cut(s) 689, 1315
Cfr13I GGNCC 2 cut(s) 751, 1625
ClaI ATCGAT 1 cut(s) 1700
CseI GACGC 2 cut(s) 55, 1726
Csp6I GTAC 2 cut(s) 634, 1450
CspCI CAANNNNNGTGG 2 cut(s) 906, 941
CviAII CATG 4 cut(s) 220, 631, 1096, 1672
CviQI GTAC 2 cut(s) 634, 1450
Eam1104I CTCTTC 3 cut(s) 301, 366, 1566
EarI CTCTTC 3 cut(s) 301, 366, 1566
Eco130I CCWWGG 1 cut(s) 1095
Eco147I AGGCCT 1 cut(s) 504
Eco24I GRGCYC 1 cut(s) 839
Eco31I GGTCTC 3 cut(s) 446, 593, 1078
Eco47I GGWCC 1 cut(s) 751
Eco57I CTGAAG 4 cut(s) 59, 783, 1373, 1768
Eco81I CCTNAGG 1 cut(s) 6
EcoRII CCWGG 7 cut(s) 436, 496, 666, 881, 1480, 1651, 1810
EcoT14I CCWWGG 1 cut(s) 1095
EcoT38I GRGCYC 1 cut(s) 839
ErhI CCWWGG 1 cut(s) 1095
FaeI CATG 4 cut(s) 223, 634, 1099, 1675
FaqI GGGAC 5 cut(s) 346, 784, 958, 1409, 1669
FatI CATG 4 cut(s) 219, 630, 1095, 1671
FauI CCCGC 2 cut(s) 152, 1635
FauNDI CATATG 1 cut(s) 1331
FbaI TGATCA 1 cut(s) 786
Fnu4HI GCNGC 1 cut(s) 1558
FokI GGATG 5 cut(s) 590, 941, 1078, 1463, 1529
FriOI GRGCYC 1 cut(s) 839
Fsp4HI GCNGC 1 cut(s) 1558
FspBI CTAG 4 cut(s) 380, 845, 900, 1202
GlaI GCGC 2 cut(s) 688, 1314
GluI GCNGC 1 cut(s) 1558
GsuI CTGGAG 1 cut(s) 480
HaeII RGCGCY 2 cut(s) 690, 1316
HaeIII GGCC 5 cut(s) 504, 910, 1051, 1485, 1626
HapII CCGG 3 cut(s) 768, 942, 1254
HgaI GACGC 2 cut(s) 55, 1726
HhaI GCGC 2 cut(s) 689, 1315
Hin1I GRCGYC 1 cut(s) 1718
Hin1II CATG 4 cut(s) 223, 634, 1099, 1675
Hin6I GCGC 2 cut(s) 687, 1313
HinP1I GCGC 2 cut(s) 687, 1313
HincII GTYRAC 1 cut(s) 662
HindII GTYRAC 1 cut(s) 662
HindIII AAGCTT 2 cut(s) 71, 1214
HpaII CCGG 3 cut(s) 768, 942, 1254
HphI GGTGA 8 cut(s) 85, 223, 276, 287, 781, 1234, 1289, 1411
Hpy166II GTNNAC 2 cut(s) 662, 1452
Hpy188III TCNNGA 9 cut(s) 139, 409, 443, 702, 728, 1223, 1303, 1351, 1639
Hpy8I GTNNAC 2 cut(s) 662, 1452
Hpy99I CGWCG 1 cut(s) 1379
HpyAV CCTTC 4 cut(s) 807, 1166, 1548, 1596
HpyCH4III ACNGT 7 cut(s) 188, 200, 404, 983, 1136, 1588, 1824
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 5 cut(s) 870, 1005, 1059, 1263, 1463
HpyF10VI GCNNNNNNNGC 3 cut(s) 695, 1065, 1189
HpySE526I ACGT 1 cut(s) 156
Hsp92I GRCGYC 1 cut(s) 1718
Hsp92II CATG 4 cut(s) 223, 634, 1099, 1675
HspAI GCGC 2 cut(s) 687, 1313
Ksp22I TGATCA 1 cut(s) 786
LmnI GCTCC 4 cut(s) 376, 1504, 1694, 1744
Lsp1109I GCAGC 1 cut(s) 1544
LweI GCATC 5 cut(s) 402, 633, 1423, 1706, 1715
MaeI CTAG 4 cut(s) 380, 845, 900, 1202
MaeII ACGT 1 cut(s) 156
MboII GAAGA 9 cut(s) 98, 251, 288, 383, 534, 685, 1414, 1537, 1583
MflI RGATCY 2 cut(s) 135, 822
MhlI GDGCHC 1 cut(s) 839
MluCI AATT 3 cut(s) 860, 1319, 1743
MlyI GAGTC 5 cut(s) 487, 611, 690, 766, 1583
MmeI TCCRAC 2 cut(s) 989, 1389
MseI TTAA 3 cut(s) 524, 828, 1704
MspI CCGG 3 cut(s) 768, 942, 1254
MvaI CCWGG 7 cut(s) 438, 498, 668, 883, 1482, 1653, 1812
MvnI CGCG 1 cut(s) 1397
MwoI GCNNNNNNNGC 3 cut(s) 695, 1065, 1189
NciI CCSGG 3 cut(s) 769, 943, 1255
NcoI CCATGG 1 cut(s) 1095
NdeI CATATG 1 cut(s) 1331
NheI GCTAGC 1 cut(s) 844
NlaIII CATG 4 cut(s) 223, 634, 1099, 1675
NlaIV GGNNCC 2 cut(s) 12, 1809
NmeAIII GCCGAG 1 cut(s) 1746
NmuCI GTSAC 7 cut(s) 755, 937, 1240, 1291, 1411, 1610, 1814
NspI RCATGY 1 cut(s) 634
PceI AGGCCT 1 cut(s) 504
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PfeI GAWTC 5 cut(s) 23, 485, 705, 1042, 1361
PflFI GACNNNGTC 2 cut(s) 110, 949
PfoI TCCNGGA 1 cut(s) 496
PkrI GCNGC 1 cut(s) 1559
PleI GAGTC 5 cut(s) 487, 611, 689, 766, 1582
PpsI GAGTC 5 cut(s) 487, 611, 689, 766, 1582
PshBI ATTAAT 1 cut(s) 1704
Psp6I CCWGG 7 cut(s) 436, 496, 666, 881, 1480, 1651, 1810
PspGI CCWGG 7 cut(s) 436, 496, 666, 881, 1480, 1651, 1810
PspN4I GGNNCC 2 cut(s) 12, 1809
PspPI GGNCC 2 cut(s) 751, 1625
PsrI GAACNNNNNNTAC 2 cut(s) 455, 487
PsuI RGATCY 2 cut(s) 135, 822
PsyI GACNNNGTC 2 cut(s) 110, 949
RsaI GTAC 2 cut(s) 635, 1451
RsaNI GTAC 2 cut(s) 634, 1450
SaqAI TTAA 3 cut(s) 524, 828, 1704
SatI GCNGC 1 cut(s) 1558
Sau96I GGNCC 2 cut(s) 751, 1625
SchI GAGTC 5 cut(s) 487, 611, 690, 766, 1583
SduI GDGCHC 1 cut(s) 839
SfaNI GCATC 5 cut(s) 402, 633, 1423, 1706, 1715
SfcI CTRYAG 3 cut(s) 400, 979, 1566
SinI GGWCC 1 cut(s) 751
SmlI CTYRAG 4 cut(s) 728, 1351, 1631, 1762
SmoI CTYRAG 4 cut(s) 728, 1351, 1631, 1762
Sse9I AATT 3 cut(s) 860, 1319, 1743
SseBI AGGCCT 1 cut(s) 504
SsiI CCGC 4 cut(s) 145, 812, 1397, 1628
SspMI CTAG 4 cut(s) 380, 845, 900, 1202
StuI AGGCCT 1 cut(s) 504
StyI CCWWGG 1 cut(s) 1095
TaaI ACNGT 7 cut(s) 188, 200, 404, 983, 1136, 1588, 1824
TaiI ACGT 1 cut(s) 159
TaqII GACCGA 2 cut(s) 1388, 1531
TasI AATT 3 cut(s) 860, 1319, 1743
TatI WGTACW 2 cut(s) 633, 1449
TfiI GAWTC 5 cut(s) 23, 485, 705, 1042, 1361
Tru1I TTAA 3 cut(s) 524, 828, 1704
Tru9I TTAA 3 cut(s) 524, 828, 1704
TscAI CASTG 7 cut(s) 199, 743, 807, 1177, 1416, 1591, 1829
TseFI GTSAC 7 cut(s) 755, 937, 1240, 1291, 1411, 1610, 1814
TseI GCWGC 1 cut(s) 1557
Tsp45I GTSAC 7 cut(s) 755, 937, 1240, 1291, 1411, 1610, 1814
TspDTI ATGAA 4 cut(s) 463, 697, 1112, 1318
TspGWI ACGGA 1 cut(s) 743
TspRI CASTG 7 cut(s) 199, 743, 807, 1177, 1416, 1591, 1829
Tth111I GACNNNGTC 2 cut(s) 110, 949
VpaK11BI GGWCC 1 cut(s) 751
VspI ATTAAT 1 cut(s) 1704
XapI RAATTY 1 cut(s) 860
XceI RCATGY 1 cut(s) 634
XcmI CCANNNNNNNNNTGG 1 cut(s) 434
XspI CTAG 4 cut(s) 380, 845, 900, 1202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.