Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0015833

Physical Location & Seq

Genomic Coordinates Forward (+)

14744677 .. 14747259

Gene Structure 2583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0158600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCGTCTGTCTTGGCGGGAACTCCGGGACCTGGAATACGCAGGGCGACGACCCGACCTGTTTAGGAGGGATGAGGACGACGAAAACGGATTCCGATTGCCACCAGCTGCCATTCTCAGCCGCCTCGCCCGGGATTATATTGGTATTTCTGCTTCCCTTTTTACCCTTTTGCTTCTAACATGTATATACATCCAATACTGTGAAGATTTCAGAACCATTAGCGGGCACTACTTAGGTGACAAGACAGAAGCACCCCTGGCTGCTCCCCTGACTCCTCGCCCTTTTAGTTTTGACACTGCATATACCATACAGAAGCTACAAACAGAAAAATGTATGTATTGTACAAAGGTGGGGGAACACGGTACTGCATTTTGCTCCTACACGAGACGTGTCCCAAAGAATGCACCTGTTGGCCATGGCTGTGAAGTAGTTTGTAGGAACTGTGGAGGTCCGTTTTCAGGCACCTGTTGTGGTCTAGATGAAGGCCGTGCTATTCTCAAAGAGTGTTTAATTTGTAGAATGTATACGGTGACCACTGGCCTAGAGGGTGCCCACGCAACAATGGAGTCGACAAGAAATTTTTGGACCTTCCTCCTGGTGTCTTTTTCCTGGATTTCTCACGCGGTGCTAGTGCTCCTGCAGCCCCTAGCCCGAGCTAGCCGAGCCTCCGCTGCACCTGCCCCGCGCTACGCGCCCCTGCGCTCATCTGCCTACTTGCGCGCCCCTGCGTCCGCAGCGGCCTGCTTGCGTGCCCGTGCACCTGCAGCTGCTCCTGCAGCCCTCTCGGCCCTGCCTCCTCCTGCATCCTTCGGCAGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009403 GO:0009404 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009653 GO:0009700 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009826 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010120 GO:0010252 GO:0010279 GO:0016043 GO:0016049 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032870 GO:0032989 GO:0034641 GO:0040007 GO:0042221 GO:0042430 GO:0042435 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046217 GO:0046483 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051176 GO:0051716 GO:0052314 GO:0052315 GO:0052317 GO:0052318 GO:0052319 GO:0052320 GO:0052322 GO:0060560 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071840 GO:1900376 GO:1900378 GO:1901182 GO:1901183 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

GH3

Protein Analysis

273

Amino Acids

29.91

Weight (kDa)

8.9

Isoelectric Point (pI)

53.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27260 AT5G54510
fragaria_vesca	FvH4_3g21460
malus_domestica	MD03G1215800.v1.1 MD11G1230400.v1.1
prunus_persica	Prupe.4G197000_v2.0.a1
pyrus_communis	pycom03g16410 pycom11g20410
rosa_chinensis	RchiOBHm_Chr5g0036891
rosa_laevigata	RLG00000033732
rosa_multiflora	Rmu_sc0007663.1_g000004
rosa_roxburghii	Rroxscaffold_1G00044060
rosa_rugosa	Rorug05G0158600
rosa_samantha	Rh5CG285100
rosa_wichuraiana	Rw5G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	685, 769
Acc36I	ACCTGC	2 cut(s)	685, 769
AccB1I	GGYRCC	2 cut(s)	461, 548
AccI	GTMKAC	2 cut(s)	524, 569
AccII	CGCG	4 cut(s)	623, 685, 692, 720
AciI	CCGC	8 cut(s)	16, 121, 222, 623, 669, 683, 732, 737
AcoI	YGGCCR	1 cut(s)	412
AcsI	RAATTY	1 cut(s)	577
AdeI	CACNNNGTG	1 cut(s)	625
AfaI	GTAC	2 cut(s)	343, 364
AfiI	CCNNNNNNNGG	4 cut(s)	31, 130, 222, 458
AflIII	ACRYGT	2 cut(s)	179, 388
AjiI	CACGTC	1 cut(s)	389
AjnI	CCWGG	4 cut(s)	30, 255, 594, 608
AluBI	AGCT	4 cut(s)	107, 316, 656, 767
AluI	AGCT	4 cut(s)	107, 316, 656, 767
Alw21I	GWGCWC	2 cut(s)	636, 760
Alw26I	GTCTC	1 cut(s)	379
Alw44I	GTGCAC	1 cut(s)	756
Ama87I	CYCGRG	2 cut(s)	129, 651
AoxI	GGCC	5 cut(s)	412, 484, 538, 738, 786
ApaLI	GTGCAC	1 cut(s)	756
ApeKI	GCWGC	9 cut(s)	107, 260, 640, 671, 734, 764, 767, 776, 813
ApoI	RAATTY	1 cut(s)	577
AspLEI	GCGC	5 cut(s)	687, 694, 702, 720, 722
AspS9I	GGNCC	4 cut(s)	28, 449, 585, 787
AsuC2I	CCSGG	3 cut(s)	26, 130, 131
AsuHPI	GGTGA	2 cut(s)	248, 541
AsuNHI	GCTAGC	1 cut(s)	656
AvaI	CYCGRG	2 cut(s)	129, 651
AvaII	GGWCC	3 cut(s)	28, 449, 585
BaeGI	GKGCMC	4 cut(s)	228, 553, 754, 760
BalI	TGGCCA	1 cut(s)	414
BanI	GGYRCC	2 cut(s)	461, 548
BarI	GAAGNNNNNNTAC	2 cut(s)	136, 168
BauI	CACGAG	1 cut(s)	382
Bbv12I	GWGCWC	2 cut(s)	636, 760
BbvI	GCAGC	8 cut(s)	94, 247, 652, 658, 746, 754, 776, 788
BceAI	ACGGC	1 cut(s)	471
BcgI	CGANNNNNNTGC	2 cut(s)	765, 799
BciT130I	CCWGG	4 cut(s)	32, 257, 596, 610
BcnI	CCSGG	3 cut(s)	26, 130, 131
BcoDI	GTCTC	1 cut(s)	379
BfaI	CTAG	5 cut(s)	476, 542, 629, 647, 657
BfmI	CTRYAG	3 cut(s)	638, 762, 774
BfuAI	ACCTGC	2 cut(s)	685, 769
BglI	GCCNNNNNGGC	1 cut(s)	785
Bme1390I	CCNGG	7 cut(s)	26, 32, 130, 131, 257, 596, 610
Bme18I	GGWCC	3 cut(s)	28, 449, 585
BmeT110I	CYCGRG	2 cut(s)	129, 651
BmgBI	CACGTC	1 cut(s)	389
BmgT120I	GGNCC	4 cut(s)	28, 449, 585, 787
BmiI	GGNNCC	3 cut(s)	29, 463, 550
BmrFI	CCNGG	7 cut(s)	26, 32, 130, 131, 257, 596, 610
BmsI	GCATC	1 cut(s)	812
BmtI	GCTAGC	1 cut(s)	660
BpuMI	CCSGG	3 cut(s)	26, 130, 131
BsaJI	CCNNGG	3 cut(s)	129, 255, 415
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 130, 222, 458
Bse1I	ACTGG	1 cut(s)	541
BseBI	CCWGG	4 cut(s)	32, 257, 596, 610
BseDI	CCNNGG	3 cut(s)	129, 255, 415
BseGI	GGATG	3 cut(s)	76, 189, 803
BseLI	CCNNNNNNNGG	4 cut(s)	31, 130, 222, 458
BseMII	CTCAG	1 cut(s)	130
BseNI	ACTGG	1 cut(s)	541
BsePI	GCGCGC	1 cut(s)	718
BseRI	GAGGAG	2 cut(s)	264, 786
BseSI	GKGCMC	4 cut(s)	228, 553, 754, 760
BseXI	GCAGC	8 cut(s)	94, 247, 652, 658, 746, 754, 776, 788
BsgI	GTGCAG	1 cut(s)	657
Bsh1236I	CGCG	4 cut(s)	623, 685, 692, 720
BshFI	GGCC	5 cut(s)	414, 486, 540, 740, 788
BshNI	GGYRCC	2 cut(s)	461, 548
BsiHKAI	GWGCWC	2 cut(s)	636, 760
BsiHKCI	CYCGRG	2 cut(s)	129, 651
BsiSI	CCGG	2 cut(s)	25, 130
BslFI	GGGAC	2 cut(s)	41, 377
BslI	CCNNNNNNNGG	4 cut(s)	31, 130, 222, 458
BsmAI	GTCTC	1 cut(s)	379
BsmBI	CGTCTC	1 cut(s)	379
BsmFI	GGGAC	2 cut(s)	41, 377
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	5 cut(s)	414, 486, 540, 740, 788
BsoBI	CYCGRG	2 cut(s)	129, 651
Bsp1286I	GDGCHC	5 cut(s)	228, 553, 636, 754, 760
Bsp1407I	TGTACA	1 cut(s)	341
Bsp19I	CCATGG	1 cut(s)	415
BspACI	CCGC	8 cut(s)	16, 121, 222, 623, 669, 683, 732, 737
BspANI	GGCC	5 cut(s)	414, 486, 540, 740, 788
BspCNI	CTCAG	1 cut(s)	129
BspFNI	CGCG	4 cut(s)	623, 685, 692, 720
BspLI	GGNNCC	3 cut(s)	29, 463, 550
BspMAI	CTGCAG	3 cut(s)	642, 766, 778
BspMI	ACCTGC	2 cut(s)	685, 769
BspOI	GCTAGC	1 cut(s)	660
BspT107I	GGYRCC	2 cut(s)	461, 548
BsrGI	TGTACA	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	541
BssECI	CCNNGG	3 cut(s)	129, 255, 415
BssHII	GCGCGC	1 cut(s)	718
BssNAI	GTATAC	1 cut(s)	525
BssSI	CACGAG	1 cut(s)	382
BssT1I	CCWWGG	1 cut(s)	415
Bst1107I	GTATAC	1 cut(s)	525
Bst2BI	CACGAG	1 cut(s)	382
Bst2UI	CCWGG	4 cut(s)	32, 257, 596, 610
Bst4CI	ACNGT	4 cut(s)	200, 362, 443, 529
BstAUI	TGTACA	1 cut(s)	341
BstC8I	GCNNGC	6 cut(s)	224, 658, 720, 742, 746, 750
BstDEI	CTNAG	2 cut(s)	116, 232
BstDSI	CCRYGG	1 cut(s)	415
BstEII	GGTNACC	1 cut(s)	529
BstF5I	GGATG	3 cut(s)	76, 189, 803
BstFNI	CGCG	4 cut(s)	623, 685, 692, 720
BstHHI	GCGC	5 cut(s)	687, 694, 702, 720, 722
BstMAI	GTCTC	1 cut(s)	379
BstNI	CCWGG	4 cut(s)	32, 257, 596, 610
BstNSI	RCATGY	1 cut(s)	183
BstPI	GGTNACC	1 cut(s)	529
BstSCI	CCNGG	7 cut(s)	24, 30, 128, 129, 255, 594, 608
BstSFI	CTRYAG	3 cut(s)	638, 762, 774
BstSLI	GKGCMC	4 cut(s)	228, 553, 754, 760
BstUI	CGCG	4 cut(s)	623, 685, 692, 720
BstV1I	GCAGC	8 cut(s)	94, 247, 652, 658, 746, 754, 776, 788
BstZ17I	GTATAC	1 cut(s)	525
BsuRI	GGCC	5 cut(s)	414, 486, 540, 740, 788
BtgI	CCRYGG	1 cut(s)	415
BtrI	CACGTC	1 cut(s)	389
BtsCI	GGATG	3 cut(s)	76, 189, 803
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	2 cut(s)	294, 534
BveI	ACCTGC	2 cut(s)	685, 769
Cac8I	GCNNGC	6 cut(s)	224, 658, 720, 742, 746, 750
CfoI	GCGC	5 cut(s)	687, 694, 702, 720, 722
Cfr13I	GGNCC	4 cut(s)	28, 449, 585, 787
Cfr9I	CCCGGG	1 cut(s)	129
CseI	GACGC	1 cut(s)	717
Csp6I	GTAC	2 cut(s)	342, 363
CviAII	CATG	2 cut(s)	180, 416
CviQI	GTAC	2 cut(s)	342, 363
DdeI	CTNAG	2 cut(s)	116, 232
DraIII	CACNNNGTG	1 cut(s)	625
EaeI	YGGCCR	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	415
Eco47I	GGWCC	3 cut(s)	28, 449, 585
Eco88I	CYCGRG	2 cut(s)	129, 651
Eco91I	GGTNACC	1 cut(s)	529
EcoO109I	RGGNCCY	1 cut(s)	28
EcoO65I	GGTNACC	1 cut(s)	529
EcoRII	CCWGG	4 cut(s)	30, 255, 594, 608
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
Esp3I	CGTCTC	1 cut(s)	379
FaeI	CATG	2 cut(s)	183, 419
FaqI	GGGAC	2 cut(s)	41, 377
FatI	CATG	2 cut(s)	179, 415
FauI	CCCGC	3 cut(s)	9, 215, 690
FblI	GTMKAC	2 cut(s)	524, 569
FokI	GGATG	3 cut(s)	83, 176, 790
FspBI	CTAG	5 cut(s)	476, 542, 629, 647, 657
GlaI	GCGC	5 cut(s)	686, 693, 701, 719, 721
HaeIII	GGCC	5 cut(s)	414, 486, 540, 740, 788
HapII	CCGG	2 cut(s)	25, 130
HgaI	GACGC	1 cut(s)	717
HhaI	GCGC	5 cut(s)	687, 694, 702, 720, 722
Hin1II	CATG	2 cut(s)	183, 419
Hin6I	GCGC	5 cut(s)	685, 692, 700, 718, 720
HinP1I	GCGC	5 cut(s)	685, 692, 700, 718, 720
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HinfI	GANTC	3 cut(s)	90, 271, 566
HpaII	CCGG	2 cut(s)	25, 130
HphI	GGTGA	2 cut(s)	248, 541
Hpy166II	GTNNAC	3 cut(s)	525, 570, 758
Hpy188I	TCNGA	2 cut(s)	95, 212
Hpy188III	TCNNGA	1 cut(s)	476
Hpy8I	GTNNAC	3 cut(s)	525, 570, 758
Hpy99I	CGWCG	2 cut(s)	51, 83
HpyAV	CCTTC	3 cut(s)	476, 598, 817
HpyCH4III	ACNGT	4 cut(s)	200, 362, 443, 529
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	9 cut(s)	299, 368, 404, 640, 674, 758, 764, 776, 803
HpyF3I	CTNAG	2 cut(s)	116, 232
HpySE526I	ACGT	1 cut(s)	388
Hsp92II	CATG	2 cut(s)	183, 419
HspAI	GCGC	5 cut(s)	685, 692, 700, 718, 720
LmnI	GCTCC	4 cut(s)	268, 380, 639, 775
Lsp1109I	GCAGC	8 cut(s)	94, 247, 652, 658, 746, 754, 776, 788
LweI	GCATC	1 cut(s)	812
MaeI	CTAG	5 cut(s)	476, 542, 629, 647, 657
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	2 cut(s)	236, 529
MboII	GAAGA	1 cut(s)	215
MhlI	GDGCHC	5 cut(s)	228, 553, 636, 754, 760
MlsI	TGGCCA	1 cut(s)	414
MluCI	AATT	2 cut(s)	510, 577
MluNI	TGGCCA	1 cut(s)	414
MlyI	GAGTC	2 cut(s)	265, 575
Mox20I	TGGCCA	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	414
MseI	TTAA	1 cut(s)	509
MslI	CAYNNNNRTG	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	414
MspA1I	CMGCKG	4 cut(s)	107, 671, 737, 767
MspI	CCGG	2 cut(s)	25, 130
MspR9I	CCNGG	7 cut(s)	26, 32, 130, 131, 257, 596, 610
Mva1269I	GAATGC	1 cut(s)	406
MvaI	CCWGG	4 cut(s)	32, 257, 596, 610
MvnI	CGCG	4 cut(s)	623, 685, 692, 720
NciI	CCSGG	3 cut(s)	26, 130, 131
NcoI	CCATGG	1 cut(s)	415
NheI	GCTAGC	1 cut(s)	656
NlaIII	CATG	2 cut(s)	183, 419
NlaIV	GGNNCC	3 cut(s)	29, 463, 550
NmeAIII	GCCGAG	2 cut(s)	686, 764
NmuCI	GTSAC	2 cut(s)	236, 529
NspI	RCATGY	1 cut(s)	183
PaqCI	CACCTGC	2 cut(s)	685, 769
PauI	GCGCGC	1 cut(s)	718
PciI	ACATGT	1 cut(s)	179
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	90
PfoI	TCCNGGA	2 cut(s)	24, 608
PleI	GAGTC	2 cut(s)	265, 574
PpsI	GAGTC	2 cut(s)	265, 574
PpuMI	RGGWCCY	1 cut(s)	28
PscI	ACATGT	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	4 cut(s)	30, 255, 594, 608
PspEI	GGTNACC	1 cut(s)	529
PspGI	CCWGG	4 cut(s)	30, 255, 594, 608
PspN4I	GGNNCC	3 cut(s)	29, 463, 550
PspPI	GGNCC	4 cut(s)	28, 449, 585, 787
PspPPI	RGGWCCY	1 cut(s)	28
PstI	CTGCAG	3 cut(s)	642, 766, 778
PteI	GCGCGC	1 cut(s)	718
PvuII	CAGCTG	2 cut(s)	107, 767
RsaI	GTAC	2 cut(s)	343, 364
RsaNI	GTAC	2 cut(s)	342, 363
RseI	CAYNNNNRTG	1 cut(s)	420
SalI	GTCGAC	1 cut(s)	568
SaqAI	TTAA	1 cut(s)	509
Sau96I	GGNCC	4 cut(s)	28, 449, 585, 787
SchI	GAGTC	2 cut(s)	265, 575
ScrFI	CCNGG	7 cut(s)	26, 32, 130, 131, 257, 596, 610
SduI	GDGCHC	5 cut(s)	228, 553, 636, 754, 760
SfaNI	GCATC	1 cut(s)	812
SfcI	CTRYAG	3 cut(s)	638, 762, 774
SinI	GGWCC	3 cut(s)	28, 449, 585
SmaI	CCCGGG	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	420
Sse9I	AATT	2 cut(s)	510, 577
SsiI	CCGC	8 cut(s)	16, 121, 222, 623, 669, 683, 732, 737
SspMI	CTAG	5 cut(s)	476, 542, 629, 647, 657
StyD4I	CCNGG	7 cut(s)	24, 30, 128, 129, 255, 594, 608
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	4 cut(s)	200, 362, 443, 529
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	1 cut(s)	569
TasI	AATT	2 cut(s)	510, 577
TatI	WGTACW	1 cut(s)	341
TauI	GCSGC	2 cut(s)	123, 740
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	2 cut(s)	301, 541
TseFI	GTSAC	2 cut(s)	236, 529
TseI	GCWGC	9 cut(s)	107, 260, 640, 671, 734, 764, 767, 776, 813
Tsp45I	GTSAC	2 cut(s)	236, 529
TspDTI	ATGAA	1 cut(s)	495
TspGWI	ACGGA	2 cut(s)	102, 441
TspMI	CCCGGG	1 cut(s)	129
TspRI	CASTG	2 cut(s)	301, 541
VneI	GTGCAC	1 cut(s)	756
VpaK11BI	GGWCC	3 cut(s)	28, 449, 585
XapI	RAATTY	1 cut(s)	577
XbaI	TCTAGA	1 cut(s)	475
XceI	RCATGY	1 cut(s)	183
XmaI	CCCGGG	1 cut(s)	129
XmiI	GTMKAC	2 cut(s)	524, 569
XspI	CTAG	5 cut(s)	476, 542, 629, 647, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.