AT4G29840

threonine synthase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
14599216 .. 14601164
1949 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29840.1

Sequence Viewer

Length: 1581 bp
ATGGCTTCGTCTTGTCTCTTCAATGCCTCTGTATCGTCCTTAAACCCTAAACAAGACCCCATCCGCCGCCACCGGTCAACCTCTCTCCTCCGCCACCGCCCCGTCGTCATCTCCTGTACCGCCGATGGCAACAACATCAAAGCCCCGATCGAGACAGCGGTCAAGCCTCCTCACCGTACCGAGGATAACATTCGAGATGAGGCTCGTCGTAATCGTTCCAACGCCGTGAATCCATTTTCAGCTAAATACGTTCCGTTTAATGCAGCTCCTGGATCCACGGAGTCTTACTCTCTCGACGAGATCGTGTACCGTAGCCGCTCCGGTGGTTTGCTTGATGTCGAACACGATATGGAGGCTTTGAAGCGATTCGATGGCGCGTATTGGCGTGATCTCTTCGATTCGCGTGTTGGTAAAAGCACATGGCCTTATGGATCGGGTGTTTGGTCGAAGAAAGAGTGGGTTCTTCCTGAGATCGATGACGACGACATCGTTTCAGCTTTTGAAGGAAACTCGAATCTGTTCTGGGCAGAGAGATTTGGTAAGCAGTTTCTAGGTATGAATGATCTGTGGGTGAAACACTGTGGGATTAGTCATACAGGAAGTTTCAAGGATCTTGGAATGACTGTTTTGGTTAGTCAAGTTAATCGTCTGAGAAAGATGAAACGACCTGTGGTTGGTGTCGGATGTGCTTCCACCGGAGATACTTCTGCTGCTCTATCTGCTTACTGCGCCTCCGCTGGAATCCCATCGATTGTGTTTTTACCGGCGAACAAGATCTCTATGGCTCAGCTGGTTCAGCCGATAGCTAATGGTGCGTTTGTTTTGAGTATTGACACTGATTTTGATGGGTGTATGAAGCTGATTAGAGAGATAACTGCGGAATTGCCGATTTATTTGGCGAATTCGTTGAATAGTTTGAGGTTAGAAGGGCAGAAAACTGCAGCTATTGAGATTTTGCAGCAGTTTGATTGGCAAGTTCCTGATTGGGTGATTGTTCCTGGAGGTAACCTAGGAAACATCTATGCCTTTTACAAAGGGTTTAAGATGTGTCAAGAACTGGGACTTGTCGATAGGATCCCGAGGATGGTCTGTGCACAAGCAGCTAATGCTAATCCTCTTTACTTGCACTACAAGTCTGGTTGGAAGGACTTCAAGCCCATGACTGCAAGTACCACTTTCGCCTCTGCGATTCAGATCGGTGACCCTGTCTCCATCGATAGAGCTGTGTACGCTCTCAAGAAGTGCAATGGTATTGTAGAAGAAGCCACAGAGGAGGAGCTGATGGATGCGATGGCTCAAGCGGATTCGACAGGAATGTTTATCTGTCCTCATACAGGTGTTGCTCTAACTGCTCTGTTCAAGCTGAGGAATCAAGGAGTGATTGCACCGACTGATCGAACTGTGGTAGTGAGTACTGCTCATGGGTTGAAGTTTACTCAGTCTAAGATAGATTATCACTCCAATGCCATCCCTGACATGGCTTGCAGATTCTCCAATCCTCCTGTTGATGTGAAAGCAGATTTCGGAGCTGTCATGGATGTTCTCAAGAGTTACTTAGGAAGTAATACACTTACGTCATAA

Protein Analysis

526

Amino Acids

57.78

Weight (kDa)

7.11

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 165 - 472 2.5e-52 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29840
fragaria_vesca FvH4_1g08110 FvH4_4g03760
malus_domestica MD15G1212700.v1.1
pyrus_communis pycom15g18900
rosa_chinensis RchiOBHm_Chr2g0094161
rosa_laevigata RLG00000016461
rosa_multiflora Rmu_co8387495.1_g000001
rosa_roxburghii Rroxscaffold_2G00147430
rosa_rugosa Rorug02G0041400
rosa_samantha Rh2AG089100 Rh2BG089200 Rh2CG091700 Rh2DG088200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 318
AccII CGCG 2 cut(s) 377, 403
AclWI GGATC 6 cut(s) 267, 280, 439, 618, 1069, 1082
AcsI RAATTY 1 cut(s) 901
AfaI GTAC 6 cut(s) 118, 178, 308, 1171, 1229, 1414
AfiI CCNNNNNNNGG 5 cut(s) 181, 674, 1084, 1334, 1477
AgeI ACCGGT 1 cut(s) 72
AgsI TTSAA 8 cut(s) 22, 361, 503, 607, 910, 1153, 1360, 1429
AjnI CCWGG 2 cut(s) 268, 997
Alw21I GWGCWC 1 cut(s) 1096
Alw26I GTCTC 3 cut(s) 20, 146, 1213
Alw44I GTGCAC 1 cut(s) 1092
AlwI GGATC 6 cut(s) 267, 280, 439, 618, 1069, 1082
AlwNI CAGNNNCTG 1 cut(s) 269
Ama87I CYCGRG 1 cut(s) 1078
AoxI GGCC 1 cut(s) 422
ApaLI GTGCAC 1 cut(s) 1092
ApeKI GCWGC 5 cut(s) 263, 710, 941, 958, 1100
ApoI RAATTY 1 cut(s) 901
ArsI GACNNNNNNTTYG 2 cut(s) 824, 856
AsiGI ACCGGT 1 cut(s) 72
Asp700I GAANNNNTTC 3 cut(s) 365, 518, 1148
AspA2I CCTAGG 1 cut(s) 1009
AspLEI GCGC 2 cut(s) 377, 731
AsuHPI GGTGA 4 cut(s) 164, 583, 1000, 1211
AvaI CYCGRG 1 cut(s) 1078
AvrII CCTAGG 1 cut(s) 1009
BaeGI GKGCMC 1 cut(s) 1096
BamHI GGATCC 2 cut(s) 272, 1074
Bbv12I GWGCWC 1 cut(s) 1096
BbvCI CCTCAGC 1 cut(s) 1364
BbvI GCAGC 5 cut(s) 275, 697, 953, 970, 1112
BceAI ACGGC 1 cut(s) 209
BciT130I CCWGG 2 cut(s) 270, 999
BcoDI GTCTC 3 cut(s) 20, 146, 1213
BfaI CTAG 2 cut(s) 551, 1010
BfmI CTRYAG 1 cut(s) 939
BglII AGATCT 1 cut(s) 774
BisI GCNGC 7 cut(s) 67, 264, 316, 711, 942, 959, 1101
BlnI CCTAGG 1 cut(s) 1009
BlpI GCTNAGC 1 cut(s) 786
BlsI GCNGC 7 cut(s) 68, 265, 317, 712, 943, 960, 1102
BmcAI AGTACT 1 cut(s) 1414
Bme1390I CCNGG 2 cut(s) 270, 999
BmeT110I CYCGRG 1 cut(s) 1078
BmiI GGNNCC 2 cut(s) 274, 1076
BmrFI CCNGG 2 cut(s) 270, 999
BmrI ACTGGG 1 cut(s) 1067
BmsI GCATC 1 cut(s) 1276
BmuI ACTGGG 1 cut(s) 1067
BoxI GACNNNNGTC 1 cut(s) 158
BplI GAGNNNNNCTC 4 cut(s) 272, 304, 1402, 1434
BpmI CTGGAG 1 cut(s) 1020
Bpu10I CCTNAGC 1 cut(s) 1364
Bpu1102I GCTNAGC 1 cut(s) 786
BpuEI CTTGAG 3 cut(s) 1220, 1281, 1529
Bsa29I ATCGAT 3 cut(s) 474, 749, 1215
BsaBI GATNNNNATC 1 cut(s) 1193
BsaJI CCNNGG 4 cut(s) 180, 276, 1009, 1079
BsaWI WCCGGW 3 cut(s) 72, 320, 695
BsaXI ACNNNNNCTCC 4 cut(s) 716, 746, 1193, 1223
Bsc4I CCNNNNNNNGG 5 cut(s) 181, 674, 1084, 1334, 1477
Bse118I RCCGGY 2 cut(s) 72, 763
Bse1I ACTGG 1 cut(s) 1062
Bse3DI GCAATG 1 cut(s) 1252
Bse8I GATNNNNATC 1 cut(s) 1193
BseBI CCWGG 2 cut(s) 270, 999
BseCI ATCGAT 3 cut(s) 474, 749, 1215
BseDI CCNNGG 4 cut(s) 180, 276, 1009, 1079
BseGI GGATG 6 cut(s) 60, 689, 1089, 1291, 1467, 1543
BseJI GATNNNNATC 1 cut(s) 1193
BseLI CCNNNNNNNGG 5 cut(s) 181, 674, 1084, 1334, 1477
BseMI GCAATG 1 cut(s) 1252
BseMII CTCAG 5 cut(s) 459, 641, 800, 1355, 1451
BseNI ACTGG 1 cut(s) 1062
BseRI GAGGAG 4 cut(s) 77, 159, 1286, 1289
BseSI GKGCMC 1 cut(s) 1096
BseXI GCAGC 5 cut(s) 275, 697, 953, 970, 1112
Bsh1236I CGCG 2 cut(s) 377, 403
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 1 cut(s) 424
BshTI ACCGGT 1 cut(s) 72
BshVI ATCGAT 3 cut(s) 474, 749, 1215
BsiEI CGRYCG 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 1096
BsiHKCI CYCGRG 1 cut(s) 1078
BsiSI CCGG 4 cut(s) 73, 321, 696, 764
BslFI GGGAC 1 cut(s) 1074
BslI CCNNNNNNNGG 5 cut(s) 181, 674, 1084, 1334, 1477
BsmAI GTCTC 3 cut(s) 20, 146, 1213
BsmFI GGGAC 1 cut(s) 1074
BsnI GGCC 1 cut(s) 424
BsoBI CYCGRG 1 cut(s) 1078
Bsp1286I GDGCHC 1 cut(s) 1096
Bsp1720I GCTNAGC 1 cut(s) 786
BspANI GGCC 1 cut(s) 424
BspCNI CTCAG 5 cut(s) 460, 642, 799, 1356, 1450
BspDI ATCGAT 3 cut(s) 474, 749, 1215
BspFNI CGCG 2 cut(s) 377, 403
BspLI GGNNCC 2 cut(s) 274, 1076
BspMAI CTGCAG 1 cut(s) 943
BspPI GGATC 6 cut(s) 267, 280, 439, 618, 1069, 1082
BsrBI CCGCTC 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 1252
BsrFI RCCGGY 2 cut(s) 72, 763
BsrI ACTGG 1 cut(s) 1062
BssAI RCCGGY 2 cut(s) 72, 763
BssECI CCNNGG 4 cut(s) 180, 276, 1009, 1079
BssT1I CCWWGG 1 cut(s) 1009
Bst2UI CCWGG 2 cut(s) 270, 999
Bst4CI ACNGT 5 cut(s) 176, 311, 581, 625, 1402
Bst6I CTCTTC 2 cut(s) 23, 398
BstAPI GCANNNNNTGC 1 cut(s) 1106
BstC8I GCNNGC 1 cut(s) 1483
BstDEI CTNAG 7 cut(s) 468, 650, 786, 1364, 1437, 1443, 1555
BstDSI CCRYGG 1 cut(s) 276
BstEII GGTNACC 2 cut(s) 1004, 1199
BstENI CCTNNNNNAGG 1 cut(s) 1332
BstF5I GGATG 6 cut(s) 60, 689, 1089, 1291, 1467, 1543
BstFNI CGCG 2 cut(s) 377, 403
BstHHI GCGC 2 cut(s) 377, 731
BstMAI GTCTC 3 cut(s) 20, 146, 1213
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 8 cut(s) 719, 728, 796, 812, 1100, 1106, 1229, 1349
BstNI CCWGG 2 cut(s) 270, 999
BstPAI GACNNNNGTC 1 cut(s) 158
BstPI GGTNACC 2 cut(s) 1004, 1199
BstSCI CCNGG 2 cut(s) 268, 997
BstSFI CTRYAG 1 cut(s) 939
BstSLI GKGCMC 1 cut(s) 1096
BstUI CGCG 2 cut(s) 377, 403
BstV1I GCAGC 5 cut(s) 275, 697, 953, 970, 1112
BstX2I RGATCY 4 cut(s) 272, 610, 774, 1074
BstYI RGATCY 4 cut(s) 272, 610, 774, 1074
Bsu15I ATCGAT 3 cut(s) 474, 749, 1215
BsuRI GGCC 1 cut(s) 424
BsuTUI ATCGAT 3 cut(s) 474, 749, 1215
BtgI CCRYGG 1 cut(s) 276
BtgZI GCGATG 1 cut(s) 1304
BtsCI GGATG 6 cut(s) 60, 689, 1089, 1291, 1467, 1543
BtsIMutI CAGTG 2 cut(s) 577, 834
Cac8I GCNNGC 1 cut(s) 1483
CaiI CAGNNNCTG 1 cut(s) 269
CfoI GCGC 2 cut(s) 377, 731
Cfr10I RCCGGY 2 cut(s) 72, 763
ClaI ATCGAT 3 cut(s) 474, 749, 1215
Csp6I GTAC 6 cut(s) 117, 177, 307, 1170, 1228, 1413
CspAI ACCGGT 1 cut(s) 72
CviAII CATG 5 cut(s) 420, 1159, 1421, 1477, 1534
CviQI GTAC 6 cut(s) 117, 177, 307, 1170, 1228, 1413
DdeI CTNAG 7 cut(s) 468, 650, 786, 1364, 1437, 1443, 1555
Eam1104I CTCTTC 2 cut(s) 23, 398
EarI CTCTTC 2 cut(s) 23, 398
EciI GGCGGA 2 cut(s) 53, 80
Eco130I CCWWGG 1 cut(s) 1009
Eco88I CYCGRG 1 cut(s) 1078
Eco91I GGTNACC 2 cut(s) 1004, 1199
EcoNI CCTNNNNNAGG 1 cut(s) 1332
EcoO65I GGTNACC 2 cut(s) 1004, 1199
EcoRI GAATTC 1 cut(s) 901
EcoRII CCWGG 2 cut(s) 268, 997
EcoT14I CCWWGG 1 cut(s) 1009
ErhI CCWWGG 1 cut(s) 1009
FaeI CATG 5 cut(s) 423, 1162, 1424, 1480, 1537
FalI AAGNNNNNCTT 4 cut(s) 1159, 1191, 1538, 1570
FaqI GGGAC 1 cut(s) 1074
FatI CATG 5 cut(s) 419, 1158, 1420, 1476, 1533
Fnu4HI GCNGC 7 cut(s) 67, 264, 316, 711, 942, 959, 1101
FokI GGATG 6 cut(s) 47, 696, 1096, 1298, 1454, 1550
Fsp4HI GCNGC 7 cut(s) 67, 264, 316, 711, 942, 959, 1101
FspBI CTAG 2 cut(s) 551, 1010
GlaI GCGC 2 cut(s) 376, 730
GluI GCNGC 7 cut(s) 67, 264, 316, 711, 942, 959, 1101
GsuI CTGGAG 1 cut(s) 1020
HaeIII GGCC 1 cut(s) 424
HapII CCGG 4 cut(s) 73, 321, 696, 764
HhaI GCGC 2 cut(s) 377, 731
Hin1II CATG 5 cut(s) 423, 1162, 1424, 1480, 1537
Hin6I GCGC 2 cut(s) 375, 729
HinP1I GCGC 2 cut(s) 375, 729
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HpaII CCGG 4 cut(s) 73, 321, 696, 764
HphI GGTGA 4 cut(s) 164, 583, 1000, 1211
Hpy166II GTNNAC 5 cut(s) 78, 307, 1094, 1228, 1434
Hpy188I TCNGA 4 cut(s) 651, 683, 1194, 1526
Hpy188III TCNNGA 9 cut(s) 151, 194, 293, 467, 980, 1052, 1078, 1237, 1546
Hpy8I GTNNAC 5 cut(s) 78, 307, 1094, 1228, 1434
Hpy99I CGWCG 4 cut(s) 107, 210, 299, 485
HpyAV CCTTC 3 cut(s) 497, 920, 1138
HpyCH4III ACNGT 5 cut(s) 176, 311, 581, 625, 1402
HpyCH4IV ACGT 2 cut(s) 249, 1574
HpyCH4V TGCA 9 cut(s) 263, 941, 958, 1094, 1126, 1166, 1245, 1385, 1485
HpyF10VI GCNNNNNNNGC 8 cut(s) 719, 728, 796, 812, 1100, 1106, 1229, 1349
HpyF3I CTNAG 7 cut(s) 468, 650, 786, 1364, 1437, 1443, 1555
HpySE526I ACGT 2 cut(s) 249, 1574
Hsp92II CATG 5 cut(s) 423, 1162, 1424, 1480, 1537
HspAI GCGC 2 cut(s) 375, 729
LmnI GCTCC 4 cut(s) 271, 323, 1276, 1526
Lsp1109I GCAGC 5 cut(s) 275, 697, 953, 970, 1112
LweI GCATC 1 cut(s) 1276
MaeI CTAG 2 cut(s) 551, 1010
MaeII ACGT 2 cut(s) 249, 1574
MaeIII GTNAC 3 cut(s) 1004, 1199, 1550
MbiI CCGCTC 1 cut(s) 318
MboII GAAGA 5 cut(s) 10, 385, 455, 460, 1271
MflI RGATCY 4 cut(s) 272, 610, 774, 1074
MhlI GDGCHC 1 cut(s) 1096
MluCI AATT 2 cut(s) 881, 901
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 3 cut(s) 243, 661, 1121
MroXI GAANNNNTTC 3 cut(s) 365, 518, 1148
MseI TTAA 4 cut(s) 41, 258, 642, 1041
MslI CAYNNNNRTG 2 cut(s) 1335, 1461
MspA1I CMGCKG 3 cut(s) 158, 737, 790
MspI CCGG 4 cut(s) 73, 321, 696, 764
MspR9I CCNGG 2 cut(s) 270, 999
MvaI CCWGG 2 cut(s) 270, 999
MvnI CGCG 2 cut(s) 377, 403
MwoI GCNNNNNNNGC 8 cut(s) 719, 728, 796, 812, 1100, 1106, 1229, 1349
NlaIII CATG 5 cut(s) 423, 1162, 1424, 1480, 1537
NlaIV GGNNCC 2 cut(s) 274, 1076
NmuCI GTSAC 1 cut(s) 1199
PcsI WCGNNNNNNNCGW 4 cut(s) 211, 300, 480, 486
PdmI GAANNNNTTC 3 cut(s) 365, 518, 1148
PfeI GAWTC 9 cut(s) 229, 366, 398, 514, 741, 1189, 1304, 1369, 1488
PflFI GACNNNGTC 1 cut(s) 1205
PfoI TCCNGGA 2 cut(s) 268, 997
PinAI ACCGGT 1 cut(s) 72
PkrI GCNGC 7 cut(s) 68, 265, 317, 712, 943, 960, 1102
Ple19I CGATCG 1 cut(s) 150
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PshAI GACNNNNGTC 1 cut(s) 158
Psp6I CCWGG 2 cut(s) 268, 997
PspEI GGTNACC 2 cut(s) 1004, 1199
PspGI CCWGG 2 cut(s) 268, 997
PspN4I GGNNCC 2 cut(s) 274, 1076
PstI CTGCAG 1 cut(s) 943
PstNI CAGNNNCTG 1 cut(s) 269
PsuI RGATCY 4 cut(s) 272, 610, 774, 1074
PsyI GACNNNGTC 1 cut(s) 1205
PvuI CGATCG 1 cut(s) 150
PvuII CAGCTG 1 cut(s) 790
RsaI GTAC 6 cut(s) 118, 178, 308, 1171, 1229, 1414
RsaNI GTAC 6 cut(s) 117, 177, 307, 1170, 1228, 1413
RseI CAYNNNNRTG 2 cut(s) 1335, 1461
SaqAI TTAA 4 cut(s) 41, 258, 642, 1041
SatI GCNGC 7 cut(s) 67, 264, 316, 711, 942, 959, 1101
ScaI AGTACT 1 cut(s) 1414
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 2 cut(s) 270, 999
SduI GDGCHC 1 cut(s) 1096
SfaNI GCATC 1 cut(s) 1276
SfcI CTRYAG 1 cut(s) 939
SmiMI CAYNNNNRTG 2 cut(s) 1335, 1461
SmlI CTYRAG 3 cut(s) 1235, 1296, 1544
SmoI CTYRAG 3 cut(s) 1235, 1296, 1544
Sse9I AATT 2 cut(s) 881, 901
SspMI CTAG 2 cut(s) 551, 1010
StyD4I CCNGG 2 cut(s) 268, 997
StyI CCWWGG 1 cut(s) 1009
TaaI ACNGT 5 cut(s) 176, 311, 581, 625, 1402
TaiI ACGT 2 cut(s) 252, 1577
TasI AATT 2 cut(s) 881, 901
TatI WGTACW 1 cut(s) 1412
TauI GCSGC 2 cut(s) 69, 318
TfiI GAWTC 9 cut(s) 229, 366, 398, 514, 741, 1189, 1304, 1369, 1488
Tru1I TTAA 4 cut(s) 41, 258, 642, 1041
Tru9I TTAA 4 cut(s) 41, 258, 642, 1041
TscAI CASTG 2 cut(s) 584, 841
TseFI GTSAC 1 cut(s) 1199
TseI GCWGC 5 cut(s) 263, 710, 941, 958, 1100
Tsp45I GTSAC 1 cut(s) 1199
TspDTI ATGAA 3 cut(s) 572, 674, 869
TspGWI ACGGA 2 cut(s) 243, 293
TspRI CASTG 2 cut(s) 584, 841
Tth111I GACNNNGTC 1 cut(s) 1205
VneI GTGCAC 1 cut(s) 1092
XagI CCTNNNNNAGG 1 cut(s) 1332
XapI RAATTY 1 cut(s) 901
XcmI CCANNNNNNNNNTGG 1 cut(s) 1474
XmaJI CCTAGG 1 cut(s) 1009
XmnI GAANNNNTTC 3 cut(s) 365, 518, 1148
XspI CTAG 2 cut(s) 551, 1010
ZrmI AGTACT 1 cut(s) 1414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.