FvH4_4g03760

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016525
Physical Location & Seq
Forward (+)
3318560 .. 3321616
3057 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g03760.t1

Sequence Viewer

Length: 1017 bp
ATGGTAGCTTATGGTTTGGCCAAGGACAGTATCAACCATGATCTTGGTCTGATCACTTTTGCTGATGTCCCTAGTCATGCTGCTCAAGTTGTTTTAGATGATCTTGCTGGTGTTACTAGTGCAAGAAGAACTAGACTTTGCTCCGGTTGGAATAAGACTACAAGGACCATAGCCCGTGTAGCTCTAAGGGTCCCAGATGTCATCATATCATGGTTGGACGTGAATACGAAGTATGACAGAAATGTGTTCATGTCTGCTATGTTAAAGGATGACACATCCTACGACAGTTTTCGTCCAGACTCGCCCGCACCCGATCTCCTCCACCTGCAACGTCGTCGAGTCCATCTGTCCTCTTTCTCACATCTCCAACGCACCCACGCCGCCGATGAGAAAATCCGCGACGAGGCCCGCCGCCACCGTCCTACTCCGCACAACTTCTCCGCCAAGTATGTCCCCTTCGAGGCCGTCACTGCCGGCGGCGCCTCCCCGGAGTCCTATTCGCTTGACAAGGCCGTCTACCGGAGCCGCTCCGACGGCCTGTTGGACGTCCAGCACGACATGGAGGCCCTCGGCAAGTTCAACGACGCGTACTGGCGCGGCCTCTTTGACTCGCGCGTCGGCCACACCACCTGGCCCTACGGCTCCGGCGTCTGGAGCAAGAAGGAGTGGGTCCTACCGGAGATCGACGACGACGATATCGTCAGCGCGTTTGAAGGAAACTCCAACCTCTTCTGGGCCGAGCAGTTCGGGAAGCAGTTTCACGGCATGAACGATCTGTGGGTGAAGCACTGTGGAATCTCCCACACTGGAAGCTTCAAAGACCTAGGCATGACCGTCCTGATCAGCCAGGTTAATCGTCTCCGGAAGCTCAAACGACCTGTCGTTGGAATCGGCTGCGCCTCCACCGGAGACTCGTCGGCTGCTCTCTCTGCCTACTGTGCTTCTGCAGGCATCCCATCCATAGTGTTTATTCCGGTGAATAAGATCTCATGGCGCAATTGGTCCAGCCGATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

339

Amino Acids

37.78

Weight (kDa)

8.8

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 235 - 329 4.9e-15 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29840
fragaria_vesca FvH4_1g08110 FvH4_4g03760
malus_domestica MD15G1212700.v1.1
pyrus_communis pycom15g18900
rosa_chinensis RchiOBHm_Chr2g0094161
rosa_laevigata RLG00000016461
rosa_multiflora Rmu_co8387495.1_g000001
rosa_roxburghii Rroxscaffold_2G00147430
rosa_rugosa Rorug02G0041400
rosa_samantha Rh2AG089100 Rh2BG089200 Rh2CG091700 Rh2DG088200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 333
AasI GACNNNNNNGTC 3 cut(s) 512, 614, 698
AatII GACGTC 1 cut(s) 549
Acc36I ACCTGC 1 cut(s) 333
AccB1I GGYRCC 1 cut(s) 479
AccBSI CCGCTC 1 cut(s) 528
AccI GTMKAC 1 cut(s) 516
AccII CGCG 6 cut(s) 399, 587, 597, 613, 615, 707
AccIII TCCGGA 1 cut(s) 861
AcoI YGGCCR 2 cut(s) 18, 619
AcyI GRCGYC 3 cut(s) 480, 546, 648
AfaI GTAC 1 cut(s) 590
AfiI CCNNNNNNNGG 6 cut(s) 403, 460, 519, 651, 733, 884
AflIII ACRYGT 1 cut(s) 585
AgsI TTSAA 3 cut(s) 580, 713, 817
AhlI ACTAGT 1 cut(s) 116
AjiI CACGTC 1 cut(s) 220
AjnI CCWGG 2 cut(s) 629, 846
AluBI AGCT 4 cut(s) 8, 182, 813, 868
AluI AGCT 4 cut(s) 8, 182, 813, 868
Alw26I GTCTC 2 cut(s) 863, 903
Aor13HI TCCGGA 1 cut(s) 861
ApeKI GCWGC 3 cut(s) 80, 894, 920
ArsI GACNNNNNNTTYG 2 cut(s) 864, 896
AspA2I CCTAGG 1 cut(s) 823
AspLEI GCGC 6 cut(s) 482, 597, 615, 707, 899, 996
AspS9I GGNCC 8 cut(s) 165, 190, 406, 565, 633, 670, 735, 1002
AsuC2I CCSGG 1 cut(s) 488
AsuHPI GGTGA 2 cut(s) 793, 988
AvaII GGWCC 4 cut(s) 165, 190, 670, 1002
AvrII CCTAGG 1 cut(s) 823
BalI TGGCCA 1 cut(s) 20
BanI GGYRCC 1 cut(s) 479
BarI GAAGNNNNNNTAC 2 cut(s) 440, 472
BbvI GCAGC 3 cut(s) 67, 881, 907
BccI CCATC 2 cut(s) 351, 964
BceAI ACGGC 5 cut(s) 449, 497, 550, 655, 778
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BciT130I CCWGG 2 cut(s) 631, 848
BclI TGATCA 2 cut(s) 51, 840
BcnI CCSGG 1 cut(s) 488
BcoDI GTCTC 2 cut(s) 863, 903
BcuI ACTAGT 1 cut(s) 116
BfaI CTAG 4 cut(s) 72, 117, 132, 824
BfmI CTRYAG 1 cut(s) 945
BfoI RGCGCY 1 cut(s) 483
BfuAI ACCTGC 1 cut(s) 333
BglII AGATCT 1 cut(s) 984
BisI GCNGC 8 cut(s) 81, 381, 412, 478, 526, 598, 895, 921
BlnI CCTAGG 1 cut(s) 823
BlsI GCNGC 8 cut(s) 82, 382, 413, 479, 527, 599, 896, 922
Bme1390I CCNGG 3 cut(s) 488, 631, 848
Bme18I GGWCC 4 cut(s) 165, 190, 670, 1002
BmgBI CACGTC 1 cut(s) 220
BmgT120I GGNCC 8 cut(s) 165, 190, 406, 565, 633, 670, 735, 1002
BmiI GGNNCC 6 cut(s) 191, 192, 481, 524, 643, 671
BmrFI CCNGG 3 cut(s) 488, 631, 848
BmsI GCATC 1 cut(s) 960
BpmI CTGGAG 1 cut(s) 673
BpuEI CTTGAG 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 488
BsaHI GRCGYC 3 cut(s) 480, 546, 648
BsaJI CCNNGG 4 cut(s) 21, 486, 568, 823
BsaWI WCCGGW 6 cut(s) 143, 519, 676, 861, 905, 973
BsaXI ACNNNNNCTCC 4 cut(s) 300, 330, 422, 452
Bsc4I CCNNNNNNNGG 6 cut(s) 403, 460, 519, 651, 733, 884
Bse118I RCCGGY 1 cut(s) 473
Bse1I ACTGG 2 cut(s) 596, 811
BseAI TCCGGA 1 cut(s) 861
BseBI CCWGG 2 cut(s) 631, 848
BseDI CCNNGG 4 cut(s) 21, 486, 568, 823
BseGI GGATG 4 cut(s) 274, 275, 951, 956
BseLI CCNNNNNNNGG 6 cut(s) 403, 460, 519, 651, 733, 884
BseNI ACTGG 2 cut(s) 596, 811
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 3 cut(s) 67, 881, 907
Bsh1236I CGCG 6 cut(s) 399, 587, 597, 613, 615, 707
BshNI GGYRCC 1 cut(s) 479
BsiSI CCGG 9 cut(s) 144, 474, 488, 520, 645, 677, 862, 906, 974
BslFI GGGAC 3 cut(s) 53, 176, 437
BslI CCNNNNNNNGG 6 cut(s) 403, 460, 519, 651, 733, 884
BsmAI GTCTC 2 cut(s) 863, 903
BsmBI CGTCTC 1 cut(s) 863
BsmFI GGGAC 3 cut(s) 53, 176, 437
Bsp13I TCCGGA 1 cut(s) 861
Bsp143I GATC 8 cut(s) 40, 51, 100, 313, 681, 772, 840, 984
BspEI TCCGGA 1 cut(s) 861
BspFNI CGCG 6 cut(s) 399, 587, 597, 613, 615, 707
BspLI GGNNCC 6 cut(s) 191, 192, 481, 524, 643, 671
BspMAI CTGCAG 1 cut(s) 949
BspMI ACCTGC 1 cut(s) 333
BspT107I GGYRCC 1 cut(s) 479
BsrBI CCGCTC 1 cut(s) 528
BsrFI RCCGGY 1 cut(s) 473
BsrI ACTGG 2 cut(s) 596, 811
BssAI RCCGGY 1 cut(s) 473
BssECI CCNNGG 4 cut(s) 21, 486, 568, 823
BssMI GATC 8 cut(s) 40, 51, 100, 313, 681, 772, 840, 984
BssNI GRCGYC 3 cut(s) 480, 546, 648
BssT1I CCWWGG 2 cut(s) 21, 823
Bst2UI CCWGG 2 cut(s) 631, 848
Bst4CI ACNGT 6 cut(s) 29, 287, 419, 791, 835, 938
Bst6I CTCTTC 1 cut(s) 734
BstACI GRCGYC 3 cut(s) 480, 546, 648
BstC8I GCNNGC 4 cut(s) 306, 409, 475, 949
BstDEI CTNAG 1 cut(s) 185
BstF5I GGATG 4 cut(s) 274, 275, 951, 956
BstFNI CGCG 6 cut(s) 399, 587, 597, 613, 615, 707
BstH2I RGCGCY 1 cut(s) 483
BstHHI GCGC 6 cut(s) 482, 597, 615, 707, 899, 996
BstKTI GATC 8 cut(s) 43, 54, 103, 316, 684, 775, 843, 987
BstMAI GTCTC 2 cut(s) 863, 903
BstMBI GATC 8 cut(s) 40, 51, 100, 313, 681, 772, 840, 984
BstMWI GCNNNNNNNGC 7 cut(s) 179, 470, 479, 534, 654, 929, 938
BstNI CCWGG 2 cut(s) 631, 848
BstSCI CCNGG 3 cut(s) 486, 629, 846
BstSFI CTRYAG 1 cut(s) 945
BstUI CGCG 6 cut(s) 399, 587, 597, 613, 615, 707
BstV1I GCAGC 3 cut(s) 67, 881, 907
BstX2I RGATCY 1 cut(s) 984
BstXI CCANNNNNNTGG 1 cut(s) 44
BstYI RGATCY 1 cut(s) 984
BtrI CACGTC 1 cut(s) 220
BtsCI GGATG 4 cut(s) 274, 275, 951, 956
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 3 cut(s) 468, 787, 804
BveI ACCTGC 1 cut(s) 333
Cac8I GCNNGC 4 cut(s) 306, 409, 475, 949
CfoI GCGC 6 cut(s) 482, 597, 615, 707, 899, 996
Cfr10I RCCGGY 1 cut(s) 473
Cfr13I GGNCC 8 cut(s) 165, 190, 406, 565, 633, 670, 735, 1002
CseI GACGC 3 cut(s) 593, 604, 637
Csp6I GTAC 1 cut(s) 589
CviAII CATG 8 cut(s) 38, 77, 210, 250, 559, 766, 829, 990
CviQI GTAC 1 cut(s) 589
DdeI CTNAG 1 cut(s) 185
DinI GGCGCC 1 cut(s) 481
DpnI GATC 8 cut(s) 42, 53, 102, 315, 683, 774, 842, 986
DpnII GATC 8 cut(s) 40, 51, 100, 313, 681, 772, 840, 984
DrdI GACNNNNNNGTC 3 cut(s) 512, 614, 698
DseDI GACNNNNNNGTC 3 cut(s) 512, 614, 698
EaeI YGGCCR 2 cut(s) 18, 619
Eam1104I CTCTTC 1 cut(s) 734
EarI CTCTTC 1 cut(s) 734
EciI GGCGGA 1 cut(s) 430
Eco130I CCWWGG 2 cut(s) 21, 823
Eco32I GATATC 1 cut(s) 697
Eco47I GGWCC 4 cut(s) 165, 190, 670, 1002
EcoO109I RGGNCCY 3 cut(s) 190, 565, 670
EcoRII CCWGG 2 cut(s) 629, 846
EcoRV GATATC 1 cut(s) 697
EcoT14I CCWWGG 2 cut(s) 21, 823
EgeI GGCGCC 1 cut(s) 481
EheI GGCGCC 1 cut(s) 481
ErhI CCWWGG 2 cut(s) 21, 823
Esp3I CGTCTC 1 cut(s) 863
FaeI CATG 8 cut(s) 41, 80, 213, 253, 562, 769, 832, 993
FaqI GGGAC 3 cut(s) 53, 176, 437
FatI CATG 8 cut(s) 37, 76, 209, 249, 558, 765, 828, 989
FauI CCCGC 2 cut(s) 313, 416
FbaI TGATCA 2 cut(s) 51, 840
FblI GTMKAC 1 cut(s) 516
Fnu4HI GCNGC 8 cut(s) 81, 381, 412, 478, 526, 598, 895, 921
FokI GGATG 4 cut(s) 262, 281, 938, 943
Fsp4HI GCNGC 8 cut(s) 81, 381, 412, 478, 526, 598, 895, 921
FspBI CTAG 4 cut(s) 72, 117, 132, 824
GlaI GCGC 6 cut(s) 481, 596, 614, 706, 898, 995
GluI GCNGC 8 cut(s) 81, 381, 412, 478, 526, 598, 895, 921
GsuI CTGGAG 1 cut(s) 673
HaeII RGCGCY 1 cut(s) 483
HapII CCGG 9 cut(s) 144, 474, 488, 520, 645, 677, 862, 906, 974
HgaI GACGC 3 cut(s) 593, 604, 637
HhaI GCGC 6 cut(s) 482, 597, 615, 707, 899, 996
Hin1I GRCGYC 3 cut(s) 480, 546, 648
Hin1II CATG 8 cut(s) 41, 80, 213, 253, 562, 769, 832, 993
Hin6I GCGC 6 cut(s) 480, 595, 613, 705, 897, 994
HinP1I GCGC 6 cut(s) 480, 595, 613, 705, 897, 994
HindIII AAGCTT 1 cut(s) 811
HinfI GANTC 7 cut(s) 299, 339, 491, 608, 795, 888, 911
HpaII CCGG 9 cut(s) 144, 474, 488, 520, 645, 677, 862, 906, 974
HphI GGTGA 2 cut(s) 793, 988
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 2 cut(s) 51, 532
Hpy188III TCNNGA 5 cut(s) 296, 652, 748, 838, 862
Hpy8I GTNNAC 1 cut(s) 517
HpyAV CCTTC 3 cut(s) 466, 655, 707
HpyCH4III ACNGT 6 cut(s) 29, 287, 419, 791, 835, 938
HpyCH4IV ACGT 3 cut(s) 219, 331, 546
HpyCH4V TGCA 3 cut(s) 122, 328, 947
HpyF10VI GCNNNNNNNGC 7 cut(s) 179, 470, 479, 534, 654, 929, 938
HpyF3I CTNAG 1 cut(s) 185
HpySE526I ACGT 3 cut(s) 219, 331, 546
Hsp92I GRCGYC 3 cut(s) 480, 546, 648
Hsp92II CATG 8 cut(s) 41, 80, 213, 253, 562, 769, 832, 993
HspAI GCGC 6 cut(s) 480, 595, 613, 705, 897, 994
KasI GGCGCC 1 cut(s) 479
KflI GGGWCCC 1 cut(s) 190
Kpn2I TCCGGA 1 cut(s) 861
KroI GCCGGC 1 cut(s) 473
KroNI GCCGGC 1 cut(s) 475
Ksp22I TGATCA 2 cut(s) 51, 840
Kzo9I GATC 8 cut(s) 40, 51, 100, 313, 681, 772, 840, 984
LmnI GCTCC 5 cut(s) 146, 522, 533, 647, 654
Lsp1109I GCAGC 3 cut(s) 67, 881, 907
LweI GCATC 1 cut(s) 960
MaeI CTAG 4 cut(s) 72, 117, 132, 824
MaeII ACGT 3 cut(s) 219, 331, 546
MaeIII GTNAC 2 cut(s) 112, 466
MalI GATC 8 cut(s) 42, 53, 102, 315, 683, 774, 842, 986
MbiI CCGCTC 1 cut(s) 528
MboI GATC 8 cut(s) 40, 51, 100, 313, 681, 772, 840, 984
MboII GAAGA 2 cut(s) 138, 721
MfeI CAATTG 1 cut(s) 997
MflI RGATCY 1 cut(s) 984
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 1 cut(s) 997
MluI ACGCGT 1 cut(s) 585
MluNI TGGCCA 1 cut(s) 20
Mly113I GGCGCC 1 cut(s) 480
MlyI GAGTC 5 cut(s) 293, 348, 500, 602, 905
MmeI TCCRAC 7 cut(s) 128, 195, 391, 522, 555, 747, 865
Mox20I TGGCCA 1 cut(s) 20
MroI TCCGGA 1 cut(s) 861
MroNI GCCGGC 1 cut(s) 473
MscI TGGCCA 1 cut(s) 20
MseI TTAA 2 cut(s) 263, 852
Msp20I TGGCCA 1 cut(s) 20
MspI CCGG 9 cut(s) 144, 474, 488, 520, 645, 677, 862, 906, 974
MspR9I CCNGG 3 cut(s) 488, 631, 848
MunI CAATTG 1 cut(s) 997
MvaI CCWGG 2 cut(s) 631, 848
MvnI CGCG 6 cut(s) 399, 587, 597, 613, 615, 707
MwoI GCNNNNNNNGC 7 cut(s) 179, 470, 479, 534, 654, 929, 938
NaeI GCCGGC 1 cut(s) 475
NarI GGCGCC 1 cut(s) 480
NciI CCSGG 1 cut(s) 488
NdeII GATC 8 cut(s) 40, 51, 100, 313, 681, 772, 840, 984
NgoMIV GCCGGC 1 cut(s) 473
NlaIII CATG 8 cut(s) 41, 80, 213, 253, 562, 769, 832, 993
NlaIV GGNNCC 6 cut(s) 191, 192, 481, 524, 643, 671
NmeAIII GCCGAG 2 cut(s) 549, 763
NmuCI GTSAC 1 cut(s) 466
PaqCI CACCTGC 1 cut(s) 333
PcsI WCGNNNNNNNCGW 5 cut(s) 552, 645, 690, 696, 768
PdiI GCCGGC 1 cut(s) 475
PfeI GAWTC 2 cut(s) 795, 888
PkrI GCNGC 8 cut(s) 82, 382, 413, 479, 527, 599, 896, 922
PleI GAGTC 5 cut(s) 293, 347, 499, 602, 905
PluTI GGCGCC 1 cut(s) 483
PpsI GAGTC 5 cut(s) 293, 347, 499, 602, 905
PpuMI RGGWCCY 2 cut(s) 190, 670
Psp5II RGGWCCY 2 cut(s) 190, 670
Psp6I CCWGG 2 cut(s) 629, 846
PspGI CCWGG 2 cut(s) 629, 846
PspN4I GGNNCC 6 cut(s) 191, 192, 481, 524, 643, 671
PspPI GGNCC 8 cut(s) 165, 190, 406, 565, 633, 670, 735, 1002
PspPPI RGGWCCY 2 cut(s) 190, 670
PstI CTGCAG 1 cut(s) 949
PsuI RGATCY 1 cut(s) 984
RsaI GTAC 1 cut(s) 590
RsaNI GTAC 1 cut(s) 589
SaqAI TTAA 2 cut(s) 263, 852
SatI GCNGC 8 cut(s) 81, 381, 412, 478, 526, 598, 895, 921
Sau3AI GATC 8 cut(s) 40, 51, 100, 313, 681, 772, 840, 984
Sau96I GGNCC 8 cut(s) 165, 190, 406, 565, 633, 670, 735, 1002
SchI GAGTC 5 cut(s) 293, 348, 500, 602, 905
ScrFI CCNGG 3 cut(s) 488, 631, 848
SfaNI GCATC 1 cut(s) 960
SfcI CTRYAG 1 cut(s) 945
SfoI GGCGCC 1 cut(s) 481
SinI GGWCC 4 cut(s) 165, 190, 670, 1002
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
SpeI ACTAGT 1 cut(s) 116
Sse9I AATT 1 cut(s) 997
SspDI GGCGCC 1 cut(s) 479
SspMI CTAG 4 cut(s) 72, 117, 132, 824
StyD4I CCNGG 3 cut(s) 486, 629, 846
StyI CCWWGG 2 cut(s) 21, 823
TaaI ACNGT 6 cut(s) 29, 287, 419, 791, 835, 938
TaiI ACGT 3 cut(s) 222, 334, 549
TaqI TCGA 3 cut(s) 337, 459, 684
TasI AATT 1 cut(s) 997
TauI GCSGC 5 cut(s) 383, 414, 480, 528, 600
TfiI GAWTC 2 cut(s) 795, 888
Tru1I TTAA 2 cut(s) 263, 852
Tru9I TTAA 2 cut(s) 263, 852
TscAI CASTG 3 cut(s) 475, 794, 811
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 3 cut(s) 80, 894, 920
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 2 cut(s) 238, 782
TspRI CASTG 3 cut(s) 475, 794, 811
VpaK11BI GGWCC 4 cut(s) 165, 190, 670, 1002
XmaJI CCTAGG 1 cut(s) 823
XmiI GTMKAC 1 cut(s) 516
XspI CTAG 4 cut(s) 72, 117, 132, 824
ZraI GACGTC 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.