Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0016525

Physical Location & Seq

Genomic Coordinates Forward (+)

7524453 .. 7526945

Gene Structure 2493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG091700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

ATGGCTTCCTCTTCCTTACTCCACCCTTCTCTCTCCTCCCTCTCCCCAAAACGCACCGTTTTATACCCAACGCCCACCCCCAAACGCTCACTCTCCGTAACCTGCACCTCCTCCACATTCGATCCCACCTCCGCCGCCGCCAACAACAACTCCCCTCCAGCTCAGCCGCCGCCTCTCCGTACCCGCGCCGCCGACGAGAACATTCGCGACGAGGCCCGGCGCCACCGCCCCACACCGCACAACTTCTCAGCCAAGTACGTCCCCTTCAACTCGGTCGCCGGCGCCGCCTCGCCGGAGTCGTACTCGCTCGACGAGATCGTCTACCGCAGCCGCTCCGGCGGCCTGCTCGACGTCCAGCACGACATGGACGCCCTCGCCAAGTTCGACGGCGCGTACTGGCGCCGCCTGTTCGACTCGCGCGTCGGCCGCACCACCTGGCCCTACGGCTCCGGCGTCTGGAGCAAGAAGGAGTGGGTCCTCCCGGAGATCGACGACGACGACATCGTCAGCGCCTTCGAGGGGAACTCCAACCTCTACTGGGCGGAGCGCTTCGGCAAGCAGTTCCTCGGCATGAACGATCTGTGGGTCAAGCACTGCGGGATTTCCCACACCGGAAGCTTCAAAGACCTAGGCATGACCGTCCTCATCAGCCAGGTCAATCGTCTCCGCAAGCTCAAACGACCTGTCGTCGGAGTCGGCTGCGCCTCCACAGGCGACACGTCGGCGGCTCTATCTGCCTACTGTGCCTCCGCAGGTATCCCGTCTATAGTGTTTCTGCCGGCGAATAAGATCTCCATGGCGCAATTGGTCCAGCCGATTGCGAATGGGGCTTTCGTGCTGAGCATTGACACTGACTTCGACGGCTGTATGAAGCTGATTAGGGAAGTCACGGCGGAATTGCCTATTTACTTGGCCAATTCGCTCAACAGTTTGAGGCTGGAGGGGCAGAAGACGGCGGCGATTGAGATATTGCAGCAGTTTGATTGGGAAGTACCGGATTGGGTCATTGTTCCGGGTGGGAATTTGGGGAATATTTACGCGTTTTACAAGGGGTTTAAAATGTGCCAGGAATTGGGGCTGGTGGATAGGGTTCCGAGGCTTGTTTGTGCTCAGGCGGCCAATGCCAACCCGCTTTACTTGTATTACAAGTCAGGGTGGAAGGATTTCAAGGCGGTGAGGGCCAACACCACGTTTGCTTCGGCTATACAGATTGGTGACCCTGTTTCGATTGATAGAGCTGTGTATGCTCTCAAGAATTGCGATGGGATTGTGGAGGAAGCTACTGAGGAGGAGCTGATGGATGCAATGGCACAAGCTGATTCTACCGGGATGTTTATATGCCCTCACACGGGGGTGGCTCTAACGGCATTGAAGAAGCTTAGGAAGAGCGGGGTTATTGGGGCTGGTGATCGGACCGTGGTGGTTAGCACTGCCCATGGTTTGAAGTTTACACAGTCTAAGGTTGATTATCACTCCAAGGCCATACCGGAGATGGCTTGCCGGTTTGCCAATCCACCCACGGAGGTCAAGGCGGAGTTTGGGGCAGTCATGGATGTTCTTCAGGAGTTTTTGAAGTCTAAGAAGTCGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004795 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016829 GO:0016835 GO:0016838 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050662 GO:0070279 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00750 ko01100 ko01110 ko01120 ko01230 map00260 map00750 map01100 map01110 map01120 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

530

Amino Acids

57.94

Weight (kDa)

8.39

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	170 - 477	3.8e-52	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29840
fragaria_vesca	FvH4_1g08110 FvH4_4g03760
malus_domestica	MD15G1212700.v1.1
pyrus_communis	pycom15g18900
rosa_chinensis	RchiOBHm_Chr2g0094161
rosa_laevigata	RLG00000016461
rosa_multiflora	Rmu_co8387495.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147430
rosa_rugosa	Rorug02G0041400
rosa_samantha	Rh2AG089100 Rh2BG089200 Rh2CG091700 Rh2DG088200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	317, 419, 503
AatII	GACGTC	1 cut(s)	354
Acc36I	ACCTGC	2 cut(s)	110, 743
AccB1I	GGYRCC	3 cut(s)	219, 281, 399
AccB7I	CCANNNNNTGG	1 cut(s)	1072
AccBSI	CCGCTC	2 cut(s)	333, 1389
AccI	GTMKAC	1 cut(s)	321
AccII	CGCG	6 cut(s)	186, 207, 392, 418, 420, 1040
AclWI	GGATC	1 cut(s)	116
AcoI	YGGCCR	3 cut(s)	424, 912, 1116
AcsI	RAATTY	1 cut(s)	1021
AcuI	CTGAAG	1 cut(s)	1544
AcyI	GRCGYC	6 cut(s)	220, 282, 351, 369, 400, 453
AfaI	GTAC	5 cut(s)	181, 257, 302, 395, 993
AfeI	AGCGCT	1 cut(s)	548
AfiI	CCNNNNNNNGG	7 cut(s)	456, 519, 538, 689, 1072, 1348, 1349
AflIII	ACRYGT	2 cut(s)	717, 1038
AgsI	TTSAA	6 cut(s)	268, 622, 1168, 1372, 1444, 1573
AhdI	GACNNNNNGTC	1 cut(s)	686
AjiI	CACGTC	1 cut(s)	720
AjnI	CCWGG	3 cut(s)	434, 651, 1065
AleI	CACNNNNGTG	1 cut(s)	1352
AluBI	AGCT	9 cut(s)	161, 618, 673, 874, 1238, 1280, 1294, 1316, 1378
AluI	AGCT	9 cut(s)	161, 618, 673, 874, 1238, 1280, 1294, 1316, 1378
Alw21I	GWGCWC	1 cut(s)	1111
Alw26I	GTCTC	1 cut(s)	668
AlwI	GGATC	1 cut(s)	116
Aor51HI	AGCGCT	1 cut(s)	548
AoxI	GGCC	8 cut(s)	213, 340, 424, 437, 912, 1116, 1179, 1479
ApeKI	GCWGC	3 cut(s)	327, 699, 973
ApoI	RAATTY	1 cut(s)	1021
ArsI	GACNNNNNNTTYG	4 cut(s)	669, 701, 839, 871
Asp700I	GAANNNNTTC	1 cut(s)	1163
AspA2I	CCTAGG	1 cut(s)	628
AspS9I	GGNCC	6 cut(s)	214, 438, 475, 808, 1179, 1413
AsuC2I	CCSGG	4 cut(s)	217, 482, 1014, 1327
AsuHPI	GGTGA	3 cut(s)	1186, 1226, 1418
AvaII	GGWCC	3 cut(s)	475, 808, 1413
AvrII	CCTAGG	1 cut(s)	628
BalI	TGGCCA	1 cut(s)	914
BanI	GGYRCC	3 cut(s)	219, 281, 399
BarI	GAAGNNNNNNTAC	2 cut(s)	248, 280
BbsI	GAAGAC	1 cut(s)	956
Bbv12I	GWGCWC	1 cut(s)	1111
BbvI	GCAGC	3 cut(s)	339, 686, 985
BccI	CCATC	3 cut(s)	1256, 1291, 1486
BceAI	ACGGC	6 cut(s)	403, 460, 877, 906, 969, 1380
BciT130I	CCWGG	3 cut(s)	436, 653, 1067
BciVI	GTATCC	1 cut(s)	767
BcnI	CCSGG	4 cut(s)	217, 482, 1014, 1327
BcoDI	GTCTC	1 cut(s)	668
BfaI	CTAG	1 cut(s)	629
BfmI	CTRYAG	1 cut(s)	765
BfoI	RGCGCY	5 cut(s)	223, 285, 403, 513, 550
BfuAI	ACCTGC	2 cut(s)	110, 743
BfuI	GTATCC	1 cut(s)	767
BglI	GCCNNNNNGGC	1 cut(s)	336
BglII	AGATCT	1 cut(s)	789
BlnI	CCTAGG	1 cut(s)	628
BlpI	GCTNAGC	2 cut(s)	162, 839
Bme1390I	CCNGG	7 cut(s)	217, 436, 482, 653, 1014, 1067, 1327
Bme18I	GGWCC	3 cut(s)	475, 808, 1413
BmeRI	GACNNNNNGTC	1 cut(s)	686
BmgBI	CACGTC	1 cut(s)	720
BmgT120I	GGNCC	6 cut(s)	214, 438, 475, 808, 1179, 1413
BmiI	GGNNCC	6 cut(s)	221, 283, 401, 448, 476, 1092
BmrFI	CCNGG	7 cut(s)	217, 436, 482, 653, 1014, 1067, 1327
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	1 cut(s)	1291
BmuI	ACTGGG	1 cut(s)	547
BpiI	GAAGAC	1 cut(s)	956
BplI	GAGNNNNNCTC	4 cut(s)	287, 319, 509, 541
BpmI	CTGGAG	3 cut(s)	141, 478, 959
Bpu10I	CCTNAGC	2 cut(s)	1110, 1379
Bpu1102I	GCTNAGC	2 cut(s)	162, 839
BpuEI	CTTGAG	1 cut(s)	1235
BpuMI	CCSGG	4 cut(s)	217, 482, 1014, 1327
BsaHI	GRCGYC	6 cut(s)	220, 282, 351, 369, 400, 453
BsaJI	CCNNGG	8 cut(s)	565, 628, 795, 1094, 1416, 1435, 1476, 1518
BsaWI	WCCGGW	3 cut(s)	611, 994, 1486
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 731, 761
Bsc4I	CCNNNNNNNGG	7 cut(s)	456, 519, 538, 689, 1072, 1348, 1349
Bse118I	RCCGGY	3 cut(s)	278, 778, 1500
Bse1I	ACTGG	2 cut(s)	401, 542
Bse3DI	GCAATG	1 cut(s)	1311
BseBI	CCWGG	3 cut(s)	436, 653, 1067
BseDI	CCNNGG	8 cut(s)	565, 628, 795, 1094, 1416, 1435, 1476, 1518
BseGI	GGATG	3 cut(s)	1306, 1335, 1558
BseLI	CCNNNNNNNGG	7 cut(s)	456, 519, 538, 689, 1072, 1348, 1349
BseMI	GCAATG	1 cut(s)	1311
BseMII	CTCAG	5 cut(s)	176, 261, 830, 1124, 1275
BseNI	ACTGG	2 cut(s)	401, 542
BseRI	GAGGAG	4 cut(s)	25, 100, 1301, 1304
BseX3I	CGGCCG	1 cut(s)	424
BseXI	GCAGC	3 cut(s)	339, 686, 985
BsgI	GTGCAG	1 cut(s)	88
Bsh1236I	CGCG	6 cut(s)	186, 207, 392, 418, 420, 1040
Bsh1285I	CGRYCG	2 cut(s)	276, 427
BshFI	GGCC	8 cut(s)	215, 342, 426, 439, 914, 1118, 1181, 1481
BshNI	GGYRCC	3 cut(s)	219, 281, 399
BsiEI	CGRYCG	2 cut(s)	276, 427
BsiHKAI	GWGCWC	1 cut(s)	1111
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	7 cut(s)	456, 519, 538, 689, 1072, 1348, 1349
BsmAI	GTCTC	1 cut(s)	668
BsmBI	CGTCTC	1 cut(s)	668
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	8 cut(s)	215, 342, 426, 439, 914, 1118, 1181, 1481
Bsp1286I	GDGCHC	1 cut(s)	1111
Bsp143I	GATC	6 cut(s)	121, 315, 486, 577, 789, 1408
Bsp1720I	GCTNAGC	2 cut(s)	162, 839
Bsp19I	CCATGG	2 cut(s)	795, 1435
Bsp68I	TCGCGA	1 cut(s)	207
BspANI	GGCC	8 cut(s)	215, 342, 426, 439, 914, 1118, 1181, 1481
BspCNI	CTCAG	5 cut(s)	175, 260, 831, 1123, 1276
BspFNI	CGCG	6 cut(s)	186, 207, 392, 418, 420, 1040
BspLI	GGNNCC	6 cut(s)	221, 283, 401, 448, 476, 1092
BspMI	ACCTGC	2 cut(s)	110, 743
BspPI	GGATC	1 cut(s)	116
BspQI	GCTCTTC	1 cut(s)	1379
BspT107I	GGYRCC	3 cut(s)	219, 281, 399
BsrBI	CCGCTC	2 cut(s)	333, 1389
BsrDI	GCAATG	1 cut(s)	1311
BsrFI	RCCGGY	3 cut(s)	278, 778, 1500
BsrI	ACTGG	2 cut(s)	401, 542
BssAI	RCCGGY	3 cut(s)	278, 778, 1500
BssECI	CCNNGG	8 cut(s)	565, 628, 795, 1094, 1416, 1435, 1476, 1518
BssMI	GATC	6 cut(s)	121, 315, 486, 577, 789, 1408
BssNI	GRCGYC	6 cut(s)	220, 282, 351, 369, 400, 453
BssT1I	CCWWGG	4 cut(s)	628, 795, 1435, 1476
Bst2UI	CCWGG	3 cut(s)	436, 653, 1067
Bst4CI	ACNGT	6 cut(s)	58, 640, 743, 929, 1417, 1455
Bst6I	CTCTTC	2 cut(s)	16, 1379
BstACI	GRCGYC	6 cut(s)	220, 282, 351, 369, 400, 453
BstC8I	GCNNGC	6 cut(s)	280, 344, 557, 671, 780, 1498
BstDEI	CTNAG	8 cut(s)	162, 247, 839, 1110, 1284, 1379, 1458, 1578
BstDSI	CCRYGG	4 cut(s)	795, 1416, 1435, 1518
BstEII	GGTNACC	1 cut(s)	1214
BstF5I	GGATG	3 cut(s)	1306, 1335, 1558
BstFNI	CGCG	6 cut(s)	186, 207, 392, 418, 420, 1040
BstH2I	RGCGCY	5 cut(s)	223, 285, 403, 513, 550
BstKTI	GATC	6 cut(s)	124, 318, 489, 580, 792, 1411
BstMAI	GTCTC	1 cut(s)	668
BstMBI	GATC	6 cut(s)	121, 315, 486, 577, 789, 1408
BstMCI	CGRYCG	2 cut(s)	276, 427
BstNI	CCWGG	3 cut(s)	436, 653, 1067
BstPI	GGTNACC	1 cut(s)	1214
BstSCI	CCNGG	7 cut(s)	215, 434, 480, 651, 1012, 1065, 1325
BstSFI	CTRYAG	1 cut(s)	765
BstUI	CGCG	6 cut(s)	186, 207, 392, 418, 420, 1040
BstV1I	GCAGC	3 cut(s)	339, 686, 985
BstV2I	GAAGAC	1 cut(s)	956
BstX2I	RGATCY	1 cut(s)	789
BstYI	RGATCY	1 cut(s)	789
BstZI	CGGCCG	1 cut(s)	424
BsuI	GTATCC	1 cut(s)	767
BsuRI	GGCC	8 cut(s)	215, 342, 426, 439, 914, 1118, 1181, 1481
BtgI	CCRYGG	4 cut(s)	795, 1416, 1435, 1518
BtgZI	GCGATG	1 cut(s)	1275
BtrI	CACGTC	1 cut(s)	720
BtsCI	GGATG	3 cut(s)	1306, 1335, 1558
BtsI	GCAGTG	2 cut(s)	592, 1428
BtsIMutI	CAGTG	3 cut(s)	592, 849, 1428
BtuMI	TCGCGA	1 cut(s)	207
BveI	ACCTGC	2 cut(s)	110, 743
Cac8I	GCNNGC	6 cut(s)	280, 344, 557, 671, 780, 1498
Cfr10I	RCCGGY	3 cut(s)	278, 778, 1500
Cfr13I	GGNCC	6 cut(s)	214, 438, 475, 808, 1179, 1413
CpoI	CGGWCCG	1 cut(s)	1413
CseI	GACGC	3 cut(s)	377, 409, 442
Csp6I	GTAC	5 cut(s)	180, 256, 301, 394, 992
CspI	CGGWCCG	1 cut(s)	1413
CviAII	CATG	6 cut(s)	364, 571, 634, 796, 1436, 1549
CviQI	GTAC	5 cut(s)	180, 256, 301, 394, 992
DdeI	CTNAG	8 cut(s)	162, 247, 839, 1110, 1284, 1379, 1458, 1578
DinI	GGCGCC	3 cut(s)	221, 283, 401
DpnI	GATC	6 cut(s)	123, 317, 488, 579, 791, 1410
DpnII	GATC	6 cut(s)	121, 315, 486, 577, 789, 1408
DraI	TTTAAA	1 cut(s)	1057
DrdI	GACNNNNNNGTC	3 cut(s)	317, 419, 503
DriI	GACNNNNNGTC	1 cut(s)	686
DseDI	GACNNNNNNGTC	3 cut(s)	317, 419, 503
EaeI	YGGCCR	3 cut(s)	424, 912, 1116
EagI	CGGCCG	1 cut(s)	424
Eam1104I	CTCTTC	2 cut(s)	16, 1379
Eam1105I	GACNNNNNGTC	1 cut(s)	686
EarI	CTCTTC	2 cut(s)	16, 1379
EciI	GGCGGA	4 cut(s)	121, 557, 908, 1547
EclXI	CGGCCG	1 cut(s)	424
Eco130I	CCWWGG	4 cut(s)	628, 795, 1435, 1476
Eco47I	GGWCC	3 cut(s)	475, 808, 1413
Eco47III	AGCGCT	1 cut(s)	548
Eco52I	CGGCCG	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	1544
Eco91I	GGTNACC	1 cut(s)	1214
EcoO109I	RGGNCCY	1 cut(s)	475
EcoO65I	GGTNACC	1 cut(s)	1214
EcoRII	CCWGG	3 cut(s)	434, 651, 1065
EcoT14I	CCWWGG	4 cut(s)	628, 795, 1435, 1476
EgeI	GGCGCC	3 cut(s)	221, 283, 401
EheI	GGCGCC	3 cut(s)	221, 283, 401
ErhI	CCWWGG	4 cut(s)	628, 795, 1435, 1476
Esp3I	CGTCTC	1 cut(s)	668
FaeI	CATG	6 cut(s)	367, 574, 637, 799, 1439, 1552
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	6 cut(s)	363, 570, 633, 795, 1435, 1548
FauI	CCCGC	4 cut(s)	191, 590, 1137, 1382
FblI	GTMKAC	1 cut(s)	321
FokI	GGATG	3 cut(s)	1313, 1342, 1565
FspBI	CTAG	1 cut(s)	629
GsuI	CTGGAG	3 cut(s)	141, 478, 959
HaeII	RGCGCY	5 cut(s)	223, 285, 403, 513, 550
HaeIII	GGCC	8 cut(s)	215, 342, 426, 439, 914, 1118, 1181, 1481
HgaI	GACGC	3 cut(s)	377, 409, 442
Hin1I	GRCGYC	6 cut(s)	220, 282, 351, 369, 400, 453
Hin1II	CATG	6 cut(s)	367, 574, 637, 799, 1439, 1552
HindIII	AAGCTT	2 cut(s)	616, 1376
HinfI	GANTC	4 cut(s)	296, 413, 693, 1319
HphI	GGTGA	3 cut(s)	1186, 1226, 1418
Hpy166II	GTNNAC	2 cut(s)	322, 1449
Hpy188I	TCNGA	3 cut(s)	692, 1095, 1413
Hpy188III	TCNNGA	4 cut(s)	206, 457, 1252, 1562
Hpy8I	GTNNAC	2 cut(s)	322, 1449
HpyAV	CCTTC	5 cut(s)	36, 274, 460, 523, 1153
HpyCH4III	ACNGT	6 cut(s)	58, 640, 743, 929, 1417, 1455
HpyCH4IV	ACGT	4 cut(s)	258, 351, 719, 1190
HpyCH4V	TGCA	3 cut(s)	105, 973, 1304
HpyF3I	CTNAG	8 cut(s)	162, 247, 839, 1110, 1284, 1379, 1458, 1578
HpySE526I	ACGT	4 cut(s)	258, 351, 719, 1190
Hsp92I	GRCGYC	6 cut(s)	220, 282, 351, 369, 400, 453
Hsp92II	CATG	6 cut(s)	367, 574, 637, 799, 1439, 1552
KasI	GGCGCC	3 cut(s)	219, 281, 399
KroI	GCCGGC	2 cut(s)	278, 778
KroNI	GCCGGC	2 cut(s)	280, 780
Kzo9I	GATC	6 cut(s)	121, 315, 486, 577, 789, 1408
LguI	GCTCTTC	1 cut(s)	1379
LmnI	GCTCC	5 cut(s)	338, 452, 459, 544, 1291
Lsp1109I	GCAGC	3 cut(s)	339, 686, 985
LweI	GCATC	1 cut(s)	1291
MaeI	CTAG	1 cut(s)	629
MaeII	ACGT	4 cut(s)	258, 351, 719, 1190
MaeIII	GTNAC	3 cut(s)	97, 886, 1214
MalI	GATC	6 cut(s)	123, 317, 488, 579, 791, 1410
MbiI	CCGCTC	2 cut(s)	333, 1389
MboI	GATC	6 cut(s)	121, 315, 486, 577, 789, 1408
MboII	GAAGA	5 cut(s)	3, 961, 1384, 1396, 1550
MfeI	CAATTG	1 cut(s)	803
MflI	RGATCY	1 cut(s)	789
MhlI	GDGCHC	1 cut(s)	1111
MlsI	TGGCCA	1 cut(s)	914
MluCI	AATT	6 cut(s)	803, 896, 916, 1021, 1070, 1255
MluI	ACGCGT	1 cut(s)	1038
MluNI	TGGCCA	1 cut(s)	914
Mly113I	GGCGCC	3 cut(s)	220, 282, 400
MlyI	GAGTC	3 cut(s)	305, 407, 702
MmeI	TCCRAC	2 cut(s)	552, 670
Mox20I	TGGCCA	1 cut(s)	914
MreI	CGCCGGCG	1 cut(s)	278
MroNI	GCCGGC	2 cut(s)	278, 778
MroXI	GAANNNNTTC	1 cut(s)	1163
MscI	TGGCCA	1 cut(s)	914
MseI	TTAA	1 cut(s)	1056
MslI	CAYNNNNRTG	1 cut(s)	1352
Msp20I	TGGCCA	1 cut(s)	914
MspR9I	CCNGG	7 cut(s)	217, 436, 482, 653, 1014, 1067, 1327
MunI	CAATTG	1 cut(s)	803
MvaI	CCWGG	3 cut(s)	436, 653, 1067
MvnI	CGCG	6 cut(s)	186, 207, 392, 418, 420, 1040
NaeI	GCCGGC	2 cut(s)	280, 780
NarI	GGCGCC	3 cut(s)	220, 282, 400
NciI	CCSGG	4 cut(s)	217, 482, 1014, 1327
NcoI	CCATGG	2 cut(s)	795, 1435
NdeII	GATC	6 cut(s)	121, 315, 486, 577, 789, 1408
NgoMIV	GCCGGC	2 cut(s)	278, 778
NlaIII	CATG	6 cut(s)	367, 574, 637, 799, 1439, 1552
NlaIV	GGNNCC	6 cut(s)	221, 283, 401, 448, 476, 1092
NmeAIII	GCCGAG	1 cut(s)	546
NmuCI	GTSAC	2 cut(s)	886, 1214
NruI	TCGCGA	1 cut(s)	207
OliI	CACNNNNGTG	1 cut(s)	1352
PciSI	GCTCTTC	1 cut(s)	1379
PcsI	WCGNNNNNNNCGW	9 cut(s)	296, 315, 357, 381, 417, 450, 495, 501, 573
PdiI	GCCGGC	2 cut(s)	280, 780
PdmI	GAANNNNTTC	1 cut(s)	1163
PfeI	GAWTC	1 cut(s)	1319
PflFI	GACNNNGTC	1 cut(s)	503
PflMI	CCANNNNNTGG	1 cut(s)	1072
PfoI	TCCNGGA	1 cut(s)	480
PleI	GAGTC	3 cut(s)	304, 407, 701
PluTI	GGCGCC	3 cut(s)	223, 285, 403
PpsI	GAGTC	3 cut(s)	304, 407, 701
PpuMI	RGGWCCY	1 cut(s)	475
Psp5II	RGGWCCY	1 cut(s)	475
Psp6I	CCWGG	3 cut(s)	434, 651, 1065
PspEI	GGTNACC	1 cut(s)	1214
PspGI	CCWGG	3 cut(s)	434, 651, 1065
PspN4I	GGNNCC	6 cut(s)	221, 283, 401, 448, 476, 1092
PspPI	GGNCC	6 cut(s)	214, 438, 475, 808, 1179, 1413
PspPPI	RGGWCCY	1 cut(s)	475
PsuI	RGATCY	1 cut(s)	789
PsyI	GACNNNGTC	1 cut(s)	503
RruI	TCGCGA	1 cut(s)	207
RsaI	GTAC	5 cut(s)	181, 257, 302, 395, 993
RsaNI	GTAC	5 cut(s)	180, 256, 301, 394, 992
RseI	CAYNNNNRTG	1 cut(s)	1352
Rsr2I	CGGWCCG	1 cut(s)	1413
RsrII	CGGWCCG	1 cut(s)	1413
SapI	GCTCTTC	1 cut(s)	1379
SaqAI	TTAA	1 cut(s)	1056
Sau3AI	GATC	6 cut(s)	121, 315, 486, 577, 789, 1408
Sau96I	GGNCC	6 cut(s)	214, 438, 475, 808, 1179, 1413
SchI	GAGTC	3 cut(s)	305, 407, 702
ScrFI	CCNGG	7 cut(s)	217, 436, 482, 653, 1014, 1067, 1327
SduI	GDGCHC	1 cut(s)	1111
SfaNI	GCATC	1 cut(s)	1291
SfcI	CTRYAG	1 cut(s)	765
SfoI	GGCGCC	3 cut(s)	221, 283, 401
SgrAI	CRCCGGYG	1 cut(s)	278
SinI	GGWCC	3 cut(s)	475, 808, 1413
SmiMI	CAYNNNNRTG	1 cut(s)	1352
SmlI	CTYRAG	1 cut(s)	1250
SmoI	CTYRAG	1 cut(s)	1250
Sse9I	AATT	6 cut(s)	803, 896, 916, 1021, 1070, 1255
SspDI	GGCGCC	3 cut(s)	219, 281, 399
SspI	AATATT	1 cut(s)	1033
SspMI	CTAG	1 cut(s)	629
StyD4I	CCNGG	7 cut(s)	215, 434, 480, 651, 1012, 1065, 1325
StyI	CCWWGG	4 cut(s)	628, 795, 1435, 1476
TaaI	ACNGT	6 cut(s)	58, 640, 743, 929, 1417, 1455
TaiI	ACGT	4 cut(s)	261, 354, 722, 1193
TaqII	GACCGA	1 cut(s)	262
TasI	AATT	6 cut(s)	803, 896, 916, 1021, 1070, 1255
TfiI	GAWTC	1 cut(s)	1319
Tru1I	TTAA	1 cut(s)	1056
Tru9I	TTAA	1 cut(s)	1056
TscAI	CASTG	3 cut(s)	599, 856, 1435
TseFI	GTSAC	2 cut(s)	886, 1214
TseI	GCWGC	3 cut(s)	327, 699, 973
Tsp45I	GTSAC	2 cut(s)	886, 1214
TspDTI	ATGAA	2 cut(s)	587, 884
TspGWI	ACGGA	3 cut(s)	85, 167, 1535
TspRI	CASTG	3 cut(s)	599, 856, 1435
Tth111I	GACNNNGTC	1 cut(s)	503
Van91I	CCANNNNNTGG	1 cut(s)	1072
VpaK11BI	GGWCC	3 cut(s)	475, 808, 1413
XapI	RAATTY	1 cut(s)	1021
XcmI	CCANNNNNNNNNTGG	2 cut(s)	802, 1489
XmaJI	CCTAGG	1 cut(s)	628
XmiI	GTMKAC	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	1163
XspI	CTAG	1 cut(s)	629
ZraI	GACGTC	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.