Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8387495.1

Orthogroup ID

OG0016525

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1199

Gene Structure 1199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8387495.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

accaccaccaccaacaccagcccaccacccctcactccctaaacccaaacccaaccaagcgccgcacactatggcttcctcttccttactccacccttctctctcctccctctccccaaaacgcaccgttttatacccaacgcctacccccaaacgctcactctccgtaacctgcacctcctccacattcgatcccacctccgccgccgccaacaacaactcccctccagctcagcctccgcctctccgtacccgcgccgccgatgagaacattcgcgacgaggcccggcgccaccgccccacaccacacaacttctcagccaagtacgtccccttcaactcagtcgccggcgccgcctcgccggagtcgtactcgctcgacgagatcgtctaccgcagccgctccggcggcctgctcgacgtccagcacgacatggacgccctcgccaagttcgacggcgcgtactggcgccgcctcttcgactcgcgcgtcggccgcaccacctggccctacggctccggcgtctggagcaagaaggagtgggtcctcccggagatcgacgacgacgacatcgtcagcgccttcgagggaaactccaacctctactgggccgagcgcttcggcaagcagttcctcggcatgaacgatctgtgggtcaagcactgcgggatttcccacaccggaagcttcaaagacctaggcatgaccgtcctcatcagccaggtcaatcgtctccgcaagctcaaacgacctgtcgtcggagtcggctgcgcctccacaggcgacacgtcggcggctctatccgcctactgcgcctccgcaggtatcccatctattgtgtttcttccggcgaataagatctccatggcgcaattggtccagccgattgcgaacggggctttcgtgctgagcattgacactgacttcgacggctgtatgaagctgattagggaagtcacggcggaattgcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004795 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016829 GO:0016835 GO:0016838 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050662 GO:0070279 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00750 ko01100 ko01110 ko01120 ko01230 map00260 map00750 map01100 map01110 map01120 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

324

Amino Acids

35.27

Weight (kDa)

8.94

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29840
fragaria_vesca	FvH4_1g08110 FvH4_4g03760
malus_domestica	MD15G1212700.v1.1
pyrus_communis	pycom15g18900
rosa_chinensis	RchiOBHm_Chr2g0094161
rosa_laevigata	RLG00000016461
rosa_multiflora	Rmu_co8387495.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147430
rosa_rugosa	Rorug02G0041400
rosa_samantha	Rh2AG089100 Rh2BG089200 Rh2CG091700 Rh2DG088200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	387, 489, 573
AatII	GACGTC	1 cut(s)	424
Acc36I	ACCTGC	2 cut(s)	180, 813
AccB1I	GGYRCC	3 cut(s)	289, 351, 469
AccBSI	CCGCTC	1 cut(s)	403
AccI	GTMKAC	1 cut(s)	391
AccII	CGCG	5 cut(s)	256, 277, 462, 488, 490
AclWI	GGATC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	494
AcyI	GRCGYC	6 cut(s)	290, 352, 421, 439, 470, 523
AfaI	GTAC	4 cut(s)	251, 327, 372, 465
AfeI	AGCGCT	1 cut(s)	618
AfiI	CCNNNNNNNGG	3 cut(s)	526, 608, 759
AflIII	ACRYGT	1 cut(s)	787
AgsI	TTSAA	2 cut(s)	338, 692
AhdI	GACNNNNNGTC	1 cut(s)	756
AjiI	CACGTC	1 cut(s)	790
AjnI	CCWGG	2 cut(s)	504, 721
AluBI	AGCT	4 cut(s)	231, 688, 743, 944
AluI	AGCT	4 cut(s)	231, 688, 743, 944
Alw26I	GTCTC	1 cut(s)	738
AlwI	GGATC	1 cut(s)	186
Aor51HI	AGCGCT	1 cut(s)	618
AoxI	GGCC	5 cut(s)	283, 410, 494, 507, 610
ApeKI	GCWGC	2 cut(s)	397, 769
ArsI	GACNNNNNNTTYG	4 cut(s)	739, 771, 909, 941
AspA2I	CCTAGG	1 cut(s)	698
AspS9I	GGNCC	5 cut(s)	284, 508, 545, 610, 878
AsuC2I	CCSGG	2 cut(s)	287, 552
AvaII	GGWCC	2 cut(s)	545, 878
AvrII	CCTAGG	1 cut(s)	698
BanI	GGYRCC	3 cut(s)	289, 351, 469
BarI	GAAGNNNNNNTAC	2 cut(s)	318, 350
BbvI	GCAGC	2 cut(s)	409, 756
BccI	CCATC	1 cut(s)	839
BceAI	ACGGC	3 cut(s)	473, 530, 947
BciT130I	CCWGG	2 cut(s)	506, 723
BciVI	GTATCC	1 cut(s)	837
BcnI	CCSGG	2 cut(s)	287, 552
BcoDI	GTCTC	1 cut(s)	738
BfaI	CTAG	1 cut(s)	699
BfoI	RGCGCY	6 cut(s)	63, 293, 355, 473, 583, 620
BfuAI	ACCTGC	2 cut(s)	180, 813
BfuI	GTATCC	1 cut(s)	837
BglI	GCCNNNNNGGC	1 cut(s)	406
BglII	AGATCT	1 cut(s)	859
BlnI	CCTAGG	1 cut(s)	698
BlpI	GCTNAGC	2 cut(s)	232, 909
Bme1390I	CCNGG	4 cut(s)	287, 506, 552, 723
Bme18I	GGWCC	2 cut(s)	545, 878
BmeRI	GACNNNNNGTC	1 cut(s)	756
BmgBI	CACGTC	1 cut(s)	790
BmgT120I	GGNCC	5 cut(s)	284, 508, 545, 610, 878
BmiI	GGNNCC	5 cut(s)	291, 353, 471, 518, 546
BmrFI	CCNGG	4 cut(s)	287, 506, 552, 723
BmrI	ACTGGG	1 cut(s)	617
BmuI	ACTGGG	1 cut(s)	617
BplI	GAGNNNNNCTC	4 cut(s)	357, 389, 579, 611
BpmI	CTGGAG	2 cut(s)	211, 548
Bpu1102I	GCTNAGC	2 cut(s)	232, 909
BpuMI	CCSGG	2 cut(s)	287, 552
BsaHI	GRCGYC	6 cut(s)	290, 352, 421, 439, 470, 523
BsaJI	CCNNGG	3 cut(s)	635, 698, 865
BsaWI	WCCGGW	1 cut(s)	681
BsaXI	ACNNNNNCTCC	4 cut(s)	204, 234, 801, 831
Bsc4I	CCNNNNNNNGG	3 cut(s)	526, 608, 759
Bse118I	RCCGGY	1 cut(s)	348
Bse1I	ACTGG	2 cut(s)	471, 612
BseBI	CCWGG	2 cut(s)	506, 723
BseDI	CCNNGG	3 cut(s)	635, 698, 865
BseLI	CCNNNNNNNGG	3 cut(s)	526, 608, 759
BseMII	CTCAG	4 cut(s)	246, 331, 355, 900
BseNI	ACTGG	2 cut(s)	471, 612
BseRI	GAGGAG	2 cut(s)	95, 170
BseX3I	CGGCCG	1 cut(s)	494
BseXI	GCAGC	2 cut(s)	409, 756
BsgI	GTGCAG	1 cut(s)	158
Bsh1236I	CGCG	5 cut(s)	256, 277, 462, 488, 490
Bsh1285I	CGRYCG	1 cut(s)	497
BshFI	GGCC	5 cut(s)	285, 412, 496, 509, 612
BshNI	GGYRCC	3 cut(s)	289, 351, 469
BsiEI	CGRYCG	1 cut(s)	497
BsiSI	CCGG	8 cut(s)	287, 349, 363, 406, 520, 552, 682, 849
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	3 cut(s)	526, 608, 759
BsmAI	GTCTC	1 cut(s)	738
BsmBI	CGTCTC	1 cut(s)	738
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	5 cut(s)	285, 412, 496, 509, 612
Bsp143I	GATC	5 cut(s)	191, 385, 556, 647, 859
Bsp1720I	GCTNAGC	2 cut(s)	232, 909
Bsp19I	CCATGG	1 cut(s)	865
Bsp68I	TCGCGA	1 cut(s)	277
BspANI	GGCC	5 cut(s)	285, 412, 496, 509, 612
BspCNI	CTCAG	4 cut(s)	245, 330, 354, 901
BspFNI	CGCG	5 cut(s)	256, 277, 462, 488, 490
BspLI	GGNNCC	5 cut(s)	291, 353, 471, 518, 546
BspMI	ACCTGC	2 cut(s)	180, 813
BspPI	GGATC	1 cut(s)	186
BspT107I	GGYRCC	3 cut(s)	289, 351, 469
BsrBI	CCGCTC	1 cut(s)	403
BsrFI	RCCGGY	1 cut(s)	348
BsrI	ACTGG	2 cut(s)	471, 612
BssAI	RCCGGY	1 cut(s)	348
BssECI	CCNNGG	3 cut(s)	635, 698, 865
BssMI	GATC	5 cut(s)	191, 385, 556, 647, 859
BssNI	GRCGYC	6 cut(s)	290, 352, 421, 439, 470, 523
BssT1I	CCWWGG	2 cut(s)	698, 865
Bst2UI	CCWGG	2 cut(s)	506, 723
Bst4CI	ACNGT	2 cut(s)	128, 710
Bst6I	CTCTTC	2 cut(s)	86, 483
BstACI	GRCGYC	6 cut(s)	290, 352, 421, 439, 470, 523
BstC8I	GCNNGC	4 cut(s)	350, 414, 627, 741
BstDEI	CTNAG	4 cut(s)	232, 317, 341, 909
BstDSI	CCRYGG	1 cut(s)	865
BstFNI	CGCG	5 cut(s)	256, 277, 462, 488, 490
BstH2I	RGCGCY	6 cut(s)	63, 293, 355, 473, 583, 620
BstKTI	GATC	5 cut(s)	194, 388, 559, 650, 862
BstMAI	GTCTC	1 cut(s)	738
BstMBI	GATC	5 cut(s)	191, 385, 556, 647, 859
BstMCI	CGRYCG	1 cut(s)	497
BstMWI	GCNNNNNNNGC	8 cut(s)	354, 406, 409, 496, 529, 804, 813, 897
BstNI	CCWGG	2 cut(s)	506, 723
BstSCI	CCNGG	4 cut(s)	285, 504, 550, 721
BstUI	CGCG	5 cut(s)	256, 277, 462, 488, 490
BstV1I	GCAGC	2 cut(s)	409, 756
BstX2I	RGATCY	1 cut(s)	859
BstYI	RGATCY	1 cut(s)	859
BstZI	CGGCCG	1 cut(s)	494
BsuI	GTATCC	1 cut(s)	837
BsuRI	GGCC	5 cut(s)	285, 412, 496, 509, 612
BtgI	CCRYGG	1 cut(s)	865
BtrI	CACGTC	1 cut(s)	790
BtsI	GCAGTG	1 cut(s)	662
BtsIMutI	CAGTG	2 cut(s)	662, 919
BtuMI	TCGCGA	1 cut(s)	277
BveI	ACCTGC	2 cut(s)	180, 813
Cac8I	GCNNGC	4 cut(s)	350, 414, 627, 741
Cfr10I	RCCGGY	1 cut(s)	348
Cfr13I	GGNCC	5 cut(s)	284, 508, 545, 610, 878
CseI	GACGC	3 cut(s)	447, 479, 512
Csp6I	GTAC	4 cut(s)	250, 326, 371, 464
CviAII	CATG	4 cut(s)	434, 641, 704, 866
CviQI	GTAC	4 cut(s)	250, 326, 371, 464
DdeI	CTNAG	4 cut(s)	232, 317, 341, 909
DinI	GGCGCC	3 cut(s)	291, 353, 471
DpnI	GATC	5 cut(s)	193, 387, 558, 649, 861
DpnII	GATC	5 cut(s)	191, 385, 556, 647, 859
DrdI	GACNNNNNNGTC	3 cut(s)	387, 489, 573
DriI	GACNNNNNGTC	1 cut(s)	756
DseDI	GACNNNNNNGTC	3 cut(s)	387, 489, 573
EaeI	YGGCCR	1 cut(s)	494
EagI	CGGCCG	1 cut(s)	494
Eam1104I	CTCTTC	2 cut(s)	86, 483
Eam1105I	GACNNNNNGTC	1 cut(s)	756
EarI	CTCTTC	2 cut(s)	86, 483
EciI	GGCGGA	3 cut(s)	191, 229, 794
EclXI	CGGCCG	1 cut(s)	494
Eco130I	CCWWGG	2 cut(s)	698, 865
Eco47I	GGWCC	2 cut(s)	545, 878
Eco47III	AGCGCT	1 cut(s)	618
Eco52I	CGGCCG	1 cut(s)	494
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRII	CCWGG	2 cut(s)	504, 721
EcoT14I	CCWWGG	2 cut(s)	698, 865
EgeI	GGCGCC	3 cut(s)	291, 353, 471
EheI	GGCGCC	3 cut(s)	291, 353, 471
ErhI	CCWWGG	2 cut(s)	698, 865
Esp3I	CGTCTC	1 cut(s)	738
FaeI	CATG	4 cut(s)	437, 644, 707, 869
FaiI	YATR	7 cut(s)	72, 134, 435, 642, 705, 867, 939
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	4 cut(s)	433, 640, 703, 865
FauI	CCCGC	2 cut(s)	261, 660
FblI	GTMKAC	1 cut(s)	391
FspBI	CTAG	1 cut(s)	699
GsuI	CTGGAG	2 cut(s)	211, 548
HaeII	RGCGCY	6 cut(s)	63, 293, 355, 473, 583, 620
HaeIII	GGCC	5 cut(s)	285, 412, 496, 509, 612
HapII	CCGG	8 cut(s)	287, 349, 363, 406, 520, 552, 682, 849
HgaI	GACGC	3 cut(s)	447, 479, 512
Hin1I	GRCGYC	6 cut(s)	290, 352, 421, 439, 470, 523
Hin1II	CATG	4 cut(s)	437, 644, 707, 869
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	3 cut(s)	366, 483, 763
HpaII	CCGG	8 cut(s)	287, 349, 363, 406, 520, 552, 682, 849
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	1 cut(s)	762
Hpy188III	TCNNGA	2 cut(s)	276, 527
Hpy8I	GTNNAC	1 cut(s)	392
HpyAV	CCTTC	4 cut(s)	106, 344, 530, 593
HpyCH4III	ACNGT	2 cut(s)	128, 710
HpyCH4IV	ACGT	3 cut(s)	328, 421, 789
HpyCH4V	TGCA	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	8 cut(s)	354, 406, 409, 496, 529, 804, 813, 897
HpyF3I	CTNAG	4 cut(s)	232, 317, 341, 909
HpySE526I	ACGT	3 cut(s)	328, 421, 789
Hsp92I	GRCGYC	6 cut(s)	290, 352, 421, 439, 470, 523
Hsp92II	CATG	4 cut(s)	437, 644, 707, 869
KasI	GGCGCC	3 cut(s)	289, 351, 469
KroI	GCCGGC	1 cut(s)	348
KroNI	GCCGGC	1 cut(s)	350
Kzo9I	GATC	5 cut(s)	191, 385, 556, 647, 859
LmnI	GCTCC	3 cut(s)	408, 522, 529
Lsp1109I	GCAGC	2 cut(s)	409, 756
MaeI	CTAG	1 cut(s)	699
MaeII	ACGT	3 cut(s)	328, 421, 789
MaeIII	GTNAC	2 cut(s)	167, 956
MalI	GATC	5 cut(s)	193, 387, 558, 649, 861
MbiI	CCGCTC	1 cut(s)	403
MboI	GATC	5 cut(s)	191, 385, 556, 647, 859
MboII	GAAGA	3 cut(s)	73, 470, 837
MfeI	CAATTG	1 cut(s)	873
MflI	RGATCY	1 cut(s)	859
MluCI	AATT	2 cut(s)	873, 966
Mly113I	GGCGCC	3 cut(s)	290, 352, 470
MlyI	GAGTC	3 cut(s)	375, 477, 772
MmeI	TCCRAC	2 cut(s)	622, 740
MreI	CGCCGGCG	1 cut(s)	348
MroNI	GCCGGC	1 cut(s)	348
MspI	CCGG	8 cut(s)	287, 349, 363, 406, 520, 552, 682, 849
MspR9I	CCNGG	4 cut(s)	287, 506, 552, 723
MunI	CAATTG	1 cut(s)	873
MvaI	CCWGG	2 cut(s)	506, 723
MvnI	CGCG	5 cut(s)	256, 277, 462, 488, 490
MwoI	GCNNNNNNNGC	8 cut(s)	354, 406, 409, 496, 529, 804, 813, 897
NaeI	GCCGGC	1 cut(s)	350
NarI	GGCGCC	3 cut(s)	290, 352, 470
NciI	CCSGG	2 cut(s)	287, 552
NcoI	CCATGG	1 cut(s)	865
NdeII	GATC	5 cut(s)	191, 385, 556, 647, 859
NgoMIV	GCCGGC	1 cut(s)	348
NlaIII	CATG	4 cut(s)	437, 644, 707, 869
NlaIV	GGNNCC	5 cut(s)	291, 353, 471, 518, 546
NmeAIII	GCCGAG	2 cut(s)	616, 638
NmuCI	GTSAC	1 cut(s)	956
NruI	TCGCGA	1 cut(s)	277
PdiI	GCCGGC	1 cut(s)	350
PflFI	GACNNNGTC	1 cut(s)	573
PfoI	TCCNGGA	1 cut(s)	550
PleI	GAGTC	3 cut(s)	374, 477, 771
PluTI	GGCGCC	3 cut(s)	293, 355, 473
PpsI	GAGTC	3 cut(s)	374, 477, 771
PpuMI	RGGWCCY	1 cut(s)	545
Psp5II	RGGWCCY	1 cut(s)	545
Psp6I	CCWGG	2 cut(s)	504, 721
PspGI	CCWGG	2 cut(s)	504, 721
PspN4I	GGNNCC	5 cut(s)	291, 353, 471, 518, 546
PspPI	GGNCC	5 cut(s)	284, 508, 545, 610, 878
PspPPI	RGGWCCY	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	859
PsyI	GACNNNGTC	1 cut(s)	573
RruI	TCGCGA	1 cut(s)	277
RsaI	GTAC	4 cut(s)	251, 327, 372, 465
RsaNI	GTAC	4 cut(s)	250, 326, 371, 464
Sau3AI	GATC	5 cut(s)	191, 385, 556, 647, 859
Sau96I	GGNCC	5 cut(s)	284, 508, 545, 610, 878
SchI	GAGTC	3 cut(s)	375, 477, 772
ScrFI	CCNGG	4 cut(s)	287, 506, 552, 723
SfoI	GGCGCC	3 cut(s)	291, 353, 471
SgrAI	CRCCGGYG	1 cut(s)	348
SinI	GGWCC	2 cut(s)	545, 878
Sse9I	AATT	2 cut(s)	873, 966
SspDI	GGCGCC	3 cut(s)	289, 351, 469
SspMI	CTAG	1 cut(s)	699
StyD4I	CCNGG	4 cut(s)	285, 504, 550, 721
StyI	CCWWGG	2 cut(s)	698, 865
TaaI	ACNGT	2 cut(s)	128, 710
TaiI	ACGT	3 cut(s)	331, 424, 792
TaqI	TCGA	8 cut(s)	190, 379, 418, 454, 481, 559, 586, 928
TasI	AATT	2 cut(s)	873, 966
TscAI	CASTG	2 cut(s)	669, 926
TseFI	GTSAC	1 cut(s)	956
TseI	GCWGC	2 cut(s)	397, 769
Tsp45I	GTSAC	1 cut(s)	956
TspDTI	ATGAA	2 cut(s)	657, 954
TspGWI	ACGGA	2 cut(s)	155, 237
TspRI	CASTG	2 cut(s)	669, 926
Tth111I	GACNNNGTC	1 cut(s)	573
VpaK11BI	GGWCC	2 cut(s)	545, 878
XcmI	CCANNNNNNNNNTGG	1 cut(s)	872
XmaJI	CCTAGG	1 cut(s)	698
XmiI	GTMKAC	1 cut(s)	391
XspI	CTAG	1 cut(s)	699
ZraI	GACGTC	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.