AT4G30410

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0020170
Physical Location & Seq
Reverse (-)
14870984 .. 14872267
1284 bp
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UTR
Exon/CDS
Intron
AT4G30410.1

Sequence Viewer

Length: 543 bp
ATGCAGCCTACGAGCTCAATGAATGAAGAATTCCTAAAGAAATGGCAAATGGGTCTTCAAATATTCCGTCCTTCGATAGACAACACGAGCGTCCACGAGAGAAAAAAAGCAATAAAGCTCTCTGCAGACGTTGCAATGGCGTCTCTAAGAAAAGGAACAACTTGTTGGAGCCGAGCCCTAATCGAGAAAACCGCCACCGAGGACAATTTCCTCGTACGTCAGATGCTTTCCGGCATCAAAGCGGAAACGTTAATCAACAAGAAGTTGCCTAAGAAGACTGTGTGTCATAGGAAGATCGTGAGGCGAAGCAAGAAGATCTTGAGGAGGAAATCGAAATCAGCGAGCGAAGAGGCTGCAGCAAAAGCTAAGAGACTCGTCAAGAGACGGACTCAAGGATTAAGAAACGTTGTACCTGGTGGTGAGTTGATGAGCAATGACGTCTTGTTGCTTCAAGAAACGTTAGATTACATTGTGTCGCTTCAAACGCAAGTAAATGTTATGAGAAGTATTGTTGATGCTGCCGAGGCCGAAATTGAGAGATAA

Protein Analysis

180

Amino Acids

20.43

Weight (kDa)

10.28

Isoelectric Point (pI)

57.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 5 - 66 1.1e-11 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30410 AT4G30410
malus_domestica MD13G1260000.v1.1 MD16G1262200.v1.1
prunus_persica Prupe.1G097600_v2.0.a1
pyrus_communis pycom16g23100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 441
AciI CCGC 2 cut(s) 192, 242
AclI AACGTT 3 cut(s) 248, 405, 458
AcsI RAATTY 1 cut(s) 29
AcyI GRCGYC 2 cut(s) 140, 438
AfaI GTAC 2 cut(s) 216, 411
AgsI TTSAA 3 cut(s) 59, 452, 482
AhdI GACNNNNNGTC 1 cut(s) 282
AjnI CCWGG 1 cut(s) 412
AjuI GAANNNNNNNTTGG 2 cut(s) 148, 180
AluBI AGCT 3 cut(s) 15, 118, 365
AluI AGCT 3 cut(s) 15, 118, 365
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 3 cut(s) 147, 364, 376
AoxI GGCC 1 cut(s) 525
ApeKI GCWGC 4 cut(s) 4, 353, 356, 518
ApoI RAATTY 1 cut(s) 29
ArsI GACNNNNNNTTYG 2 cut(s) 52, 84
AsuHPI GGTGA 1 cut(s) 431
BanII GRGCYC 2 cut(s) 17, 178
BauI CACGAG 2 cut(s) 85, 95
BbsI GAAGAC 2 cut(s) 47, 281
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 4 cut(s) 16, 340, 368, 505
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BciT130I CCWGG 1 cut(s) 414
BcoDI GTCTC 3 cut(s) 147, 364, 376
BfmI CTRYAG 2 cut(s) 123, 354
BglII AGATCT 1 cut(s) 315
BisI GCNGC 4 cut(s) 5, 354, 357, 519
BlsI GCNGC 4 cut(s) 6, 355, 358, 520
Bme1390I CCNGG 1 cut(s) 414
BmeRI GACNNNNNGTC 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 3 cut(s) 213, 243, 505
BpiI GAAGAC 2 cut(s) 47, 281
BplI GAGNNNNNCTC 2 cut(s) 373, 405
BpuEI CTTGAG 2 cut(s) 340, 375
BsaHI GRCGYC 2 cut(s) 140, 438
BsaJI CCNNGG 2 cut(s) 198, 522
Bse3DI GCAATG 2 cut(s) 141, 439
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 2 cut(s) 198, 522
BseMI GCAATG 2 cut(s) 141, 439
BseRI GAGGAG 1 cut(s) 337
BseXI GCAGC 4 cut(s) 16, 340, 368, 505
BshFI GGCC 1 cut(s) 527
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 1 cut(s) 231
BsiWI CGTACG 1 cut(s) 214
BsmAI GTCTC 3 cut(s) 147, 364, 376
BsmBI CGTCTC 2 cut(s) 147, 376
BsnI GGCC 1 cut(s) 527
Bsp1286I GDGCHC 2 cut(s) 17, 178
Bsp143I GATC 2 cut(s) 294, 315
BspACI CCGC 2 cut(s) 192, 242
BspANI GGCC 1 cut(s) 527
BspLI GGNNCC 1 cut(s) 170
BspMAI CTGCAG 2 cut(s) 127, 358
BsrDI GCAATG 2 cut(s) 141, 439
BssECI CCNNGG 2 cut(s) 198, 522
BssMI GATC 2 cut(s) 294, 315
BssNI GRCGYC 2 cut(s) 140, 438
BssSI CACGAG 2 cut(s) 85, 95
Bst2BI CACGAG 2 cut(s) 85, 95
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 342
BstACI GRCGYC 2 cut(s) 140, 438
BstAPI GCANNNNNTGC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 3 cut(s) 146, 270, 366
BstKTI GATC 2 cut(s) 297, 318
BstMAI GTCTC 3 cut(s) 147, 364, 376
BstMBI GATC 2 cut(s) 294, 315
BstMWI GCNNNNNNNGC 4 cut(s) 131, 362, 484, 524
BstNI CCWGG 1 cut(s) 414
BstSCI CCNGG 1 cut(s) 412
BstSFI CTRYAG 2 cut(s) 123, 354
BstV1I GCAGC 4 cut(s) 16, 340, 368, 505
BstV2I GAAGAC 2 cut(s) 47, 281
BstX2I RGATCY 1 cut(s) 315
BstYI RGATCY 1 cut(s) 315
BsuRI GGCC 1 cut(s) 527
Cac8I GCNNGC 1 cut(s) 343
CseI GACGC 2 cut(s) 79, 129
CsiI ACCWGGT 1 cut(s) 412
Csp6I GTAC 2 cut(s) 215, 410
CviJI RGCY 8 cut(s) 7, 15, 118, 171, 176, 353, 365, 527
CviKI_1 RGCY 8 cut(s) 7, 15, 118, 171, 176, 353, 365, 527
CviQI GTAC 2 cut(s) 215, 410
DdeI CTNAG 3 cut(s) 146, 270, 366
DpnI GATC 2 cut(s) 296, 317
DpnII GATC 2 cut(s) 294, 315
DriI GACNNNNNGTC 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 342
Eam1105I GACNNNNNGTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 342
Ecl136II GAGCTC 1 cut(s) 15
Eco24I GRGCYC 2 cut(s) 17, 178
Eco53kI GAGCTC 1 cut(s) 15
EcoICRI GAGCTC 1 cut(s) 15
EcoRI GAATTC 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 412
EcoT38I GRGCYC 2 cut(s) 17, 178
Esp3I CGTCTC 2 cut(s) 147, 376
FaiI YATR 2 cut(s) 288, 500
FalI AAGNNNNNCTT 2 cut(s) 302, 334
Fnu4HI GCNGC 4 cut(s) 5, 354, 357, 519
FriOI GRGCYC 2 cut(s) 17, 178
Fsp4HI GCNGC 4 cut(s) 5, 354, 357, 519
GluI GCNGC 4 cut(s) 5, 354, 357, 519
HaeIII GGCC 1 cut(s) 527
HapII CCGG 1 cut(s) 231
HgaI GACGC 2 cut(s) 79, 129
Hin1I GRCGYC 2 cut(s) 140, 438
HinfI GANTC 2 cut(s) 372, 388
HpaII CCGG 1 cut(s) 231
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 5 cut(s) 184, 298, 319, 379, 452
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 6 cut(s) 129, 217, 248, 405, 438, 458
HpyCH4V TGCA 4 cut(s) 4, 125, 134, 356
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 362, 484, 524
HpyF3I CTNAG 3 cut(s) 146, 270, 366
HpySE526I ACGT 6 cut(s) 129, 217, 248, 405, 438, 458
Hsp92I GRCGYC 2 cut(s) 140, 438
Kzo9I GATC 2 cut(s) 294, 315
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 3 cut(s) 244, 399, 426
Lsp1109I GCAGC 4 cut(s) 16, 340, 368, 505
LweI GCATC 3 cut(s) 213, 243, 505
MabI ACCWGGT 1 cut(s) 412
MaeII ACGT 6 cut(s) 129, 217, 248, 405, 438, 458
MalI GATC 2 cut(s) 296, 317
MboI GATC 2 cut(s) 294, 315
MboII GAAGA 6 cut(s) 38, 47, 286, 304, 325, 359
MflI RGATCY 1 cut(s) 315
MhlI GDGCHC 2 cut(s) 17, 178
MluCI AATT 3 cut(s) 29, 205, 531
MlyI GAGTC 2 cut(s) 366, 382
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 7 cut(s) 193, 221, 294, 315, 318, 343, 517
MseI TTAA 2 cut(s) 251, 398
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 1 cut(s) 414
MvaI CCWGG 1 cut(s) 414
MwoI GCNNNNNNNGC 4 cut(s) 131, 362, 484, 524
NdeII GATC 2 cut(s) 294, 315
NlaIV GGNNCC 1 cut(s) 170
NmeAIII GCCGAG 1 cut(s) 197
PcsI WCGNNNNNNNCGW 1 cut(s) 338
Pfl23II CGTACG 1 cut(s) 214
PkrI GCNGC 4 cut(s) 6, 355, 358, 520
PleI GAGTC 2 cut(s) 366, 382
PpsI GAGTC 2 cut(s) 366, 382
Psp124BI GAGCTC 1 cut(s) 17
Psp1406I AACGTT 3 cut(s) 248, 405, 458
Psp6I CCWGG 1 cut(s) 412
PspGI CCWGG 1 cut(s) 412
PspLI CGTACG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 170
PstI CTGCAG 2 cut(s) 127, 358
PsuI RGATCY 1 cut(s) 315
RsaI GTAC 2 cut(s) 216, 411
RsaNI GTAC 2 cut(s) 215, 410
SacI GAGCTC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 251, 398
SatI GCNGC 4 cut(s) 5, 354, 357, 519
Sau3AI GATC 2 cut(s) 294, 315
SchI GAGTC 2 cut(s) 366, 382
ScrFI CCNGG 1 cut(s) 414
SduI GDGCHC 2 cut(s) 17, 178
SexAI ACCWGGT 1 cut(s) 412
SfaNI GCATC 3 cut(s) 213, 243, 505
SfcI CTRYAG 2 cut(s) 123, 354
SmlI CTYRAG 2 cut(s) 319, 390
SmoI CTYRAG 2 cut(s) 319, 390
Sse9I AATT 3 cut(s) 29, 205, 531
SsiI CCGC 2 cut(s) 192, 242
SspI AATATT 1 cut(s) 63
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 412
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 6 cut(s) 132, 220, 251, 408, 441, 461
TaqI TCGA 3 cut(s) 74, 183, 332
TasI AATT 3 cut(s) 29, 205, 531
Tru1I TTAA 2 cut(s) 251, 398
Tru9I TTAA 2 cut(s) 251, 398
TseI GCWGC 4 cut(s) 4, 353, 356, 518
TspDTI ATGAA 2 cut(s) 35, 39
TspGWI ACGGA 2 cut(s) 56, 400
XapI RAATTY 1 cut(s) 29
ZraI GACGTC 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.