Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0020170

Physical Location & Seq

Genomic Coordinates Forward (+)

23665298 .. 23665798

Gene Structure 501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g23100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGACCAACTTAGACAGAAAGAAGGCTATCAAGTTATCCGCAGATATAGCCATGGCTTCTACAAGAAATGGAACTACACGTTGGAGCAACGCCGTCATAGCCAATGCTACCCACAGCAACGGTGACAATAACAGAATCTTCTTTGAGCGTATACTGGCTGGTGGTGATGGTGGTCGTCGTCATTGTCCCGAGCACTGTGGAAGAACGAAAGCTTCGAGATCAGTGTCATCAGTGATGCACAAGAAGATCTTGAAGAAGAGCCGGAGGGTATGTAGTAGAACTGTGTTGGGGAGGAAACATAACCTAGCAAAAACCGATTCCATTGCAAAGAAATTGGTCCGGAAGAAAACACAAGTGCTCAAGAGTCTTGTTCCTGGAGGAGAATCCATGGATGAGCTCTCTTTGGTTGTGGAAACCCTAGATTATATCGTGTCTCTGCGAACTCAGGTTGAGGTAATGCGGTGTCTTGCCACCACCGCGGAGTTAATAAATGGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0040008 GO:0042221 GO:0043401 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.3

Weight (kDa)

10.44

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBH1_N	PF26576	3 - 38	1.3e-07	IBH1-like, N-terminal domain
bHLH_SAC51	PF23173	109 - 152	4.9e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30410 AT4G30410
malus_domestica	MD13G1260000.v1.1 MD16G1262200.v1.1
prunus_persica	Prupe.1G097600_v2.0.a1
pyrus_communis	pycom16g23100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	151
AccII	CGCG	1 cut(s)	479
AccIII	TCCGGA	1 cut(s)	339
AciI	CCGC	4 cut(s)	39, 460, 477, 479
AfaI	GTAC	1 cut(s)	496
AflIII	ACRYGT	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	373
AjuI	GAANNNNNNNTTGG	2 cut(s)	64, 96
AluBI	AGCT	2 cut(s)	212, 397
AluI	AGCT	2 cut(s)	212, 397
Alw21I	GWGCWC	3 cut(s)	195, 360, 399
Alw26I	GTCTC	1 cut(s)	438
Ama87I	CYCGRG	1 cut(s)	188
Aor13HI	TCCGGA	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	337
AsuHPI	GGTGA	2 cut(s)	134, 176
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	399
Bbv12I	GWGCWC	3 cut(s)	195, 360, 399
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	1 cut(s)	77
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	1 cut(s)	375
BcoDI	GTCTC	1 cut(s)	438
BfaI	CTAG	2 cut(s)	305, 419
BglII	AGATCT	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	337
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	337
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	344
BsaJI	CCNNGG	3 cut(s)	51, 387, 477
BsaWI	WCCGGW	1 cut(s)	339
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bse1I	ACTGG	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	321
BseAI	TCCGGA	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	3 cut(s)	51, 387, 477
BseGI	GGATG	1 cut(s)	397
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	393
Bsh1236I	CGCG	1 cut(s)	479
BsiHKAI	GWGCWC	3 cut(s)	195, 360, 399
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	2 cut(s)	262, 340
BslFI	GGGAC	1 cut(s)	171
BsmAI	GTCTC	1 cut(s)	438
BsmFI	GGGAC	1 cut(s)	171
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	3 cut(s)	195, 360, 399
Bsp13I	TCCGGA	1 cut(s)	339
Bsp143I	GATC	2 cut(s)	218, 246
Bsp19I	CCATGG	2 cut(s)	51, 387
BspACI	CCGC	4 cut(s)	39, 460, 477, 479
BspCNI	CTCAG	1 cut(s)	457
BspEI	TCCGGA	1 cut(s)	339
BspFNI	CGCG	1 cut(s)	479
BspQI	GCTCTTC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	3 cut(s)	51, 387, 477
BssMI	GATC	2 cut(s)	218, 246
BssNAI	GTATAC	1 cut(s)	152
BssT1I	CCWWGG	2 cut(s)	51, 387
Bst1107I	GTATAC	1 cut(s)	152
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	3 cut(s)	122, 197, 283
Bst6I	CTCTTC	1 cut(s)	251
BstDEI	CTNAG	2 cut(s)	10, 444
BstDSI	CCRYGG	3 cut(s)	51, 387, 477
BstF5I	GGATG	1 cut(s)	397
BstFNI	CGCG	1 cut(s)	479
BstKTI	GATC	2 cut(s)	221, 249
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	2 cut(s)	218, 246
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 98, 476
BstNI	CCWGG	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	373
BstUI	CGCG	1 cut(s)	479
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BstZ17I	GTATAC	1 cut(s)	152
BtgI	CCRYGG	3 cut(s)	51, 387, 477
BtsCI	GGATG	1 cut(s)	397
BtsIMutI	CAGTG	3 cut(s)	193, 228, 237
Cfr13I	GGNCC	1 cut(s)	337
Cfr42I	CCGCGG	1 cut(s)	480
Csp6I	GTAC	1 cut(s)	495
CviAII	CATG	2 cut(s)	52, 388
CviJI	RGCY	8 cut(s)	26, 50, 56, 101, 158, 212, 261, 397
CviKI_1	RGCY	8 cut(s)	26, 50, 56, 101, 158, 212, 261, 397
CviQI	GTAC	1 cut(s)	495
DdeI	CTNAG	2 cut(s)	10, 444
DpnI	GATC	2 cut(s)	220, 248
DpnII	GATC	2 cut(s)	218, 246
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Ecl136II	GAGCTC	1 cut(s)	397
Eco130I	CCWWGG	2 cut(s)	51, 387
Eco24I	GRGCYC	1 cut(s)	399
Eco47I	GGWCC	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	397
Eco88I	CYCGRG	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	373
EcoT14I	CCWWGG	2 cut(s)	51, 387
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	2 cut(s)	51, 387
FaeI	CATG	2 cut(s)	55, 391
FaiI	YATR	9 cut(s)	47, 53, 98, 152, 271, 300, 389, 426, 499
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	2 cut(s)	51, 387
FblI	GTMKAC	1 cut(s)	151
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	1 cut(s)	399
FspBI	CTAG	2 cut(s)	305, 419
GsuI	CTGGAG	1 cut(s)	396
HapII	CCGG	2 cut(s)	262, 340
Hin1II	CATG	2 cut(s)	55, 391
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	4 cut(s)	135, 317, 364, 383
HpaII	CCGG	2 cut(s)	262, 340
HphI	GGTGA	2 cut(s)	134, 176
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188III	TCNNGA	5 cut(s)	188, 216, 250, 340, 361
Hpy8I	GTNNAC	1 cut(s)	152
Hpy99I	CGWCG	1 cut(s)	180
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	3 cut(s)	122, 197, 283
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	2 cut(s)	238, 326
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 98, 476
HpyF3I	CTNAG	2 cut(s)	10, 444
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	2 cut(s)	55, 391
Kpn2I	TCCGGA	1 cut(s)	339
KspI	CCGCGG	1 cut(s)	480
Kzo9I	GATC	2 cut(s)	218, 246
LguI	GCTCTTC	1 cut(s)	251
LmnI	GCTCC	1 cut(s)	84
LpnPI	CCDG	7 cut(s)	140, 144, 275, 353, 360, 387, 431
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	2 cut(s)	305, 419
MaeII	ACGT	1 cut(s)	79
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	2 cut(s)	220, 248
MboI	GATC	2 cut(s)	218, 246
MboII	GAAGA	6 cut(s)	130, 213, 256, 265, 268, 355
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	3 cut(s)	195, 360, 399
MluCI	AATT	1 cut(s)	332
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	4 cut(s)	258, 285, 371, 445
MroI	TCCGGA	1 cut(s)	339
MseI	TTAA	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	479
MspI	CCGG	2 cut(s)	262, 340
MspR9I	CCNGG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	375
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	3 cut(s)	47, 98, 476
NcoI	CCATGG	2 cut(s)	51, 387
NdeII	GATC	2 cut(s)	218, 246
NlaIII	CATG	2 cut(s)	55, 391
NmuCI	GTSAC	1 cut(s)	122
PciSI	GCTCTTC	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PfeI	GAWTC	3 cut(s)	135, 317, 383
PfoI	TCCNGGA	1 cut(s)	373
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspPI	GGNCC	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	246
RsaI	GTAC	1 cut(s)	496
RsaNI	GTAC	1 cut(s)	495
SacI	GAGCTC	1 cut(s)	399
SacII	CCGCGG	1 cut(s)	480
SapI	GCTCTTC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	485
Sau3AI	GATC	2 cut(s)	218, 246
Sau96I	GGNCC	1 cut(s)	337
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	3 cut(s)	195, 360, 399
SetI	ASST	6 cut(s)	82, 214, 306, 399, 450, 456
SfaNI	GCATC	1 cut(s)	225
Sfr303I	CCGCGG	1 cut(s)	480
SgrBI	CCGCGG	1 cut(s)	480
SinI	GGWCC	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	1 cut(s)	332
SsiI	CCGC	4 cut(s)	39, 460, 477, 479
SspMI	CTAG	2 cut(s)	305, 419
SstI	GAGCTC	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	373
StyI	CCWWGG	2 cut(s)	51, 387
TaaI	ACNGT	3 cut(s)	122, 197, 283
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	1 cut(s)	215
TasI	AATT	1 cut(s)	332
TfiI	GAWTC	3 cut(s)	135, 317, 383
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TscAI	CASTG	3 cut(s)	200, 228, 237
TseFI	GTSAC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	122
TspRI	CASTG	3 cut(s)	200, 228, 237
VpaK11BI	GGWCC	1 cut(s)	337
XmiI	GTMKAC	1 cut(s)	151
XspI	CTAG	2 cut(s)	305, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.