Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0020170

Physical Location & Seq

Genomic Coordinates Forward (+)

31782277 .. 31783485

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1260000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGACCAACTTAGACAGAAAGAAGGCTATCAAGTTGTCAGCAGATATAGCCATGGCTTCAACAAGAAATGGAACTACAAGTTGGAGCCGCGCCGTCATAGCCAATGCTACTGACAAGAACGACGGCAATAACAGAATCGTGGTCGAGCGTATACTGGGTGGTGCTGCTGCTGCTGCTGCTGCTGGTTGTCCTCGTTGTCATCCTGAGCACTGTGAGATTAAGAAAGCTTCAAGATCAGTGTCGTCCGTGGTGCACAAGAAGATCTTGAAAAAGAGCCGGAGGGTACGTAGTACTAATGTGTTGAGGAGGAAACGTGCAAAAACCCATCCGATTACAAAGAGATTGGTCCGGAAGAAAACACAAGTGCTCAAGAGTCTTGTTCCTGGAGGACAATCCATGGATGAGCTCTCTTTGATTGAGGAAACACTAGATTATATCGTGTCACTGAGAGCTCAGGTTGAGGTAATGCGGTGTCTTGCCACCACCGCTGAGTTAATAAATGGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0040008 GO:0042221 GO:0043401 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

18.53

Weight (kDa)

10.58

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBH1_N	PF26576	3 - 37	1.2e-07	IBH1-like, N-terminal domain
bHLH_SAC51	PF23173	114 - 155	5.6e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30410 AT4G30410
malus_domestica	MD13G1260000.v1.1 MD16G1262200.v1.1
prunus_persica	Prupe.1G097600_v2.0.a1
pyrus_communis	pycom16g23100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	151
AccII	CGCG	1 cut(s)	90
AccIII	TCCGGA	1 cut(s)	348
AciI	CCGC	3 cut(s)	88, 469, 486
AfaI	GTAC	3 cut(s)	285, 292, 505
AgsI	TTSAA	3 cut(s)	60, 231, 268
AjnI	CCWGG	1 cut(s)	382
AjuI	GAANNNNNNNTTGG	2 cut(s)	64, 96
AluBI	AGCT	3 cut(s)	227, 406, 452
AluI	AGCT	3 cut(s)	227, 406, 452
Alw21I	GWGCWC	5 cut(s)	210, 255, 369, 408, 454
Alw44I	GTGCAC	1 cut(s)	251
Aor13HI	TCCGGA	1 cut(s)	348
ApaLI	GTGCAC	1 cut(s)	251
ApeKI	GCWGC	6 cut(s)	164, 167, 170, 173, 176, 179
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	255
BanII	GRGCYC	2 cut(s)	408, 454
Bbv12I	GWGCWC	5 cut(s)	210, 255, 369, 408, 454
BbvI	GCAGC	6 cut(s)	151, 154, 157, 160, 163, 166
BccI	CCATC	1 cut(s)	333
BceAI	ACGGC	2 cut(s)	77, 139
BciT130I	CCWGG	1 cut(s)	384
BfaI	CTAG	1 cut(s)	428
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	7 cut(s)	88, 165, 168, 171, 174, 177, 180
BlsI	GCNGC	7 cut(s)	89, 166, 169, 172, 175, 178, 181
BmcAI	AGTACT	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	86
BmrFI	CCNGG	1 cut(s)	384
BmrI	ACTGGG	1 cut(s)	164
BmuI	ACTGGG	1 cut(s)	164
BpmI	CTGGAG	1 cut(s)	405
Bpu10I	CCTNAGC	2 cut(s)	204, 453
BpuEI	CTTGAG	1 cut(s)	353
BsaAI	YACGTR	1 cut(s)	287
BsaJI	CCNNGG	3 cut(s)	51, 246, 396
BsaWI	WCCGGW	1 cut(s)	348
BsaXI	ACNNNNNCTCC	4 cut(s)	271, 298, 301, 328
Bse1I	ACTGG	1 cut(s)	159
BseAI	TCCGGA	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	3 cut(s)	51, 246, 396
BseGI	GGATG	3 cut(s)	199, 325, 406
BseMII	CTCAG	4 cut(s)	195, 437, 467, 480
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	319
BseSI	GKGCMC	1 cut(s)	255
BseXI	GCAGC	6 cut(s)	151, 154, 157, 160, 163, 166
Bsh1236I	CGCG	1 cut(s)	90
BsiHKAI	GWGCWC	5 cut(s)	210, 255, 369, 408, 454
BsiSI	CCGG	2 cut(s)	277, 349
Bsp1286I	GDGCHC	5 cut(s)	210, 255, 369, 408, 454
Bsp13I	TCCGGA	1 cut(s)	348
Bsp143I	GATC	2 cut(s)	233, 261
Bsp19I	CCATGG	2 cut(s)	51, 396
BspACI	CCGC	3 cut(s)	88, 469, 486
BspCNI	CTCAG	4 cut(s)	196, 438, 466, 481
BspEI	TCCGGA	1 cut(s)	348
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	3 cut(s)	51, 246, 396
BssMI	GATC	2 cut(s)	233, 261
BssNAI	GTATAC	1 cut(s)	152
BssT1I	CCWWGG	2 cut(s)	51, 396
Bst1107I	GTATAC	1 cut(s)	152
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	212
BstBAI	YACGTR	1 cut(s)	287
BstDEI	CTNAG	5 cut(s)	10, 204, 446, 453, 489
BstDSI	CCRYGG	3 cut(s)	51, 246, 396
BstF5I	GGATG	3 cut(s)	199, 325, 406
BstFNI	CGCG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	2 cut(s)	236, 264
BstMBI	GATC	2 cut(s)	233, 261
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 98, 170, 173, 176, 179, 485
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	382
BstSLI	GKGCMC	1 cut(s)	255
BstSNI	TACGTA	1 cut(s)	287
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	6 cut(s)	151, 154, 157, 160, 163, 166
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BstZ17I	GTATAC	1 cut(s)	152
BtgI	CCRYGG	3 cut(s)	51, 246, 396
BtsCI	GGATG	3 cut(s)	199, 325, 406
BtsIMutI	CAGTG	3 cut(s)	208, 243, 443
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	346
Csp6I	GTAC	3 cut(s)	284, 291, 504
CviAII	CATG	2 cut(s)	52, 397
CviJI	RGCY	9 cut(s)	26, 50, 56, 87, 101, 227, 276, 406, 452
CviKI_1	RGCY	9 cut(s)	26, 50, 56, 87, 101, 227, 276, 406, 452
CviQI	GTAC	3 cut(s)	284, 291, 504
DdeI	CTNAG	5 cut(s)	10, 204, 446, 453, 489
DpnI	GATC	2 cut(s)	235, 263
DpnII	GATC	2 cut(s)	233, 261
Ecl136II	GAGCTC	2 cut(s)	406, 452
Eco105I	TACGTA	1 cut(s)	287
Eco130I	CCWWGG	2 cut(s)	51, 396
Eco24I	GRGCYC	2 cut(s)	408, 454
Eco47I	GGWCC	1 cut(s)	346
Eco53kI	GAGCTC	2 cut(s)	406, 452
EcoICRI	GAGCTC	2 cut(s)	406, 452
EcoRII	CCWGG	1 cut(s)	382
EcoT14I	CCWWGG	2 cut(s)	51, 396
EcoT38I	GRGCYC	2 cut(s)	408, 454
ErhI	CCWWGG	2 cut(s)	51, 396
FaeI	CATG	2 cut(s)	55, 400
FaiI	YATR	7 cut(s)	47, 53, 98, 152, 398, 435, 508
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FatI	CATG	2 cut(s)	51, 396
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	7 cut(s)	88, 165, 168, 171, 174, 177, 180
FokI	GGATG	3 cut(s)	186, 312, 413
FriOI	GRGCYC	2 cut(s)	408, 454
Fsp4HI	GCNGC	7 cut(s)	88, 165, 168, 171, 174, 177, 180
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	7 cut(s)	88, 165, 168, 171, 174, 177, 180
GsuI	CTGGAG	1 cut(s)	405
HapII	CCGG	2 cut(s)	277, 349
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	2 cut(s)	55, 400
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	2 cut(s)	135, 373
HpaII	CCGG	2 cut(s)	277, 349
Hpy166II	GTNNAC	2 cut(s)	152, 253
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	5 cut(s)	203, 231, 265, 349, 370
Hpy8I	GTNNAC	2 cut(s)	152, 253
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	2 cut(s)	286, 313
HpyCH4V	TGCA	2 cut(s)	253, 317
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 98, 170, 173, 176, 179, 485
HpyF3I	CTNAG	5 cut(s)	10, 204, 446, 453, 489
HpySE526I	ACGT	2 cut(s)	286, 313
Hsp92II	CATG	2 cut(s)	55, 400
HspAI	GCGC	1 cut(s)	90
Kpn2I	TCCGGA	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	233, 261
LmnI	GCTCC	1 cut(s)	84
LpnPI	CCDG	8 cut(s)	140, 168, 216, 290, 362, 369, 396, 440
Lsp1109I	GCAGC	6 cut(s)	151, 154, 157, 160, 163, 166
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	2 cut(s)	286, 313
MaeIII	GTNAC	1 cut(s)	441
MalI	GATC	2 cut(s)	235, 263
MboI	GATC	2 cut(s)	233, 261
MboII	GAAGA	2 cut(s)	271, 364
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	5 cut(s)	210, 255, 369, 408, 454
MlyI	GAGTC	1 cut(s)	382
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	7 cut(s)	201, 273, 297, 300, 380, 412, 454
MroI	TCCGGA	1 cut(s)	348
MseI	TTAA	2 cut(s)	219, 494
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	2 cut(s)	277, 349
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	7 cut(s)	47, 98, 170, 173, 176, 179, 485
NcoI	CCATGG	2 cut(s)	51, 396
NdeII	GATC	2 cut(s)	233, 261
NlaIII	CATG	2 cut(s)	55, 400
NlaIV	GGNNCC	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	441
PfeI	GAWTC	1 cut(s)	135
PfoI	TCCNGGA	1 cut(s)	382
PkrI	GCNGC	7 cut(s)	89, 166, 169, 172, 175, 178, 181
PleI	GAGTC	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	381
Ppu21I	YACGTR	1 cut(s)	287
Psp124BI	GAGCTC	2 cut(s)	408, 454
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	86
PspPI	GGNCC	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	261
RsaI	GTAC	3 cut(s)	285, 292, 505
RsaNI	GTAC	3 cut(s)	284, 291, 504
SacI	GAGCTC	2 cut(s)	408, 454
SaqAI	TTAA	2 cut(s)	219, 494
SatI	GCNGC	7 cut(s)	88, 165, 168, 171, 174, 177, 180
Sau3AI	GATC	2 cut(s)	233, 261
Sau96I	GGNCC	1 cut(s)	346
ScaI	AGTACT	1 cut(s)	292
SchI	GAGTC	1 cut(s)	382
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	5 cut(s)	210, 255, 369, 408, 454
SetI	ASST	7 cut(s)	229, 289, 316, 408, 454, 459, 465
SinI	GGWCC	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
SnaBI	TACGTA	1 cut(s)	287
SsiI	CCGC	3 cut(s)	88, 469, 486
SspMI	CTAG	1 cut(s)	428
SstI	GAGCTC	2 cut(s)	408, 454
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	2 cut(s)	51, 396
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	2 cut(s)	289, 316
TaqI	TCGA	1 cut(s)	144
TatI	WGTACW	1 cut(s)	290
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	2 cut(s)	219, 494
Tru9I	TTAA	2 cut(s)	219, 494
TscAI	CASTG	3 cut(s)	215, 243, 450
TseFI	GTSAC	1 cut(s)	441
TseI	GCWGC	6 cut(s)	164, 167, 170, 173, 176, 179
Tsp45I	GTSAC	1 cut(s)	441
TspGWI	ACGGA	1 cut(s)	235
TspRI	CASTG	3 cut(s)	215, 243, 450
VneI	GTGCAC	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	151
XspI	CTAG	1 cut(s)	428
ZrmI	AGTACT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.