AT4G30860

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013529
Physical Location & Seq
Forward (+)
15024444 .. 15027672
3229 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30860.1

Sequence Viewer

Length: 1494 bp
ATGTTAGATCTGGGAAACATGTCTATGTCTGCATCTGTTGCTCTCACTTGTTGCCCTTCTTTTCTTCCGGCGGCTTCAGGCCCTGAATTAGCCAAATCTATCAATTCCCCGGAAAATCTAGCCGGAGAATGCAATGGGAAACATTTACCAATGATTCCACCGGAGGAAGAGGTCAAGGACATTAAAATTGCTAATGGAGTCACTGCTTTTACCCGGAAACAGAATCCGTCTGACAGAGTCAAGAAAGGGTTTGTCTTGGATGATCATGTGAAGGATTGGGTCAAGAGAAGAGTGGCTTCTGGTGTTTCAGAGTCGACATGTTTCCTTCCTTTTCTTGTTGGTGCCAAGAAAATGGTTGATTGTCTTGTTTGCCATAAGCCGGTGTACCCGGGGGAAGACTTATCGTGTTCTGTTCGCGGCTGCCAAGGCGCTTATCACTCGCTTTGTGCGAAAGAAAGTCTTGGTTTTTCTAAGTCAAGCAAATTTAAATGCCCTCAACATGAGTGCTTTGTCTGCAAGCAAAGAACACAATGGCGGTGTGTTAAGTGTCCAATGGCTGCTCATGATAAACATTCTCCATGGTCAAAAGAAATACTTCACTTAAAAGACCAACCAGGAAGAGCAGTTTGTTGGAGGCATCCAACTGATTGGCGGCTAGACACAAAGCATGCAGTTGCACAGAGTGAGATTGAGGAAGTCTTTTGCCAGTTGCCTTTGCCATATGTGGAAGAGGAGTTTAAGATTGACTTAGCATGGAAAGATTCTGTTGTGAAGGAAGATCCGCCTTCTTATGTGCACATTAGACGCAATATTTACCTCGTTAAGAAAAAGCGTGATAATGCTAATGATGGTGTTGGGTGCACAAATTGTGGCCCTAATTGCGATAGAAGCTGTGTTTGCAGGGTTCAATGCATAAGCTGTTCAAAGGGATGCAGCTGTCCTGAAAGTTGTGGAAACAGACCATTCCGCAAAGAGAAAAAGATCAAAATTGTTAAGACTGAACATTGCGGTTGGGGAGTTGAGGCAGCAGAATCAATCAACAAAGAGGACTTCATTGTCGAATACATTGGTGAAGTGATTAGTGATGCTCAATGTGAGCAAAGGCTTTGGGATATGAAACACAAAGGCATGAAAGACTTTTACATGTGTGAGATTCAAAAAGACTTCACGATTGATGCTACCTTCAAAGGGAACGCCTCTCGGTTTCTGAACCACAGTTGCAACCCAAACTGTGTATTGGAAAAGTGGCAAGTTGAAGGTGAGACCCGTGTGGGTGTCTTTGCAGCTCGTCAAATAGAAGCAGGAGAGCCACTTACATATGACTACAGATTTGTGCAGTTTGGTCCTGAAGTAAAGTGCAATTGTGGTTCTGAAAACTGTCAAGGTTATCTTGGGACAAAGAGGAAAGAACCAAACTGTTTGGTTGTATCTTGGGGAGCAAAACGCAGAAGATTGTTTCACCGACCTATAGCCCGTAAACCGCAGCAAGATTAG

Protein Analysis

497

Amino Acids

56.12

Weight (kDa)

8.55

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 337 - 442 1.8e-25 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013529)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30860
fragaria_vesca FvH4_4g08820 FvH4_4g08820
malus_domestica MD16G1258900.v1.1
prunus_persica Prupe.1G101500_v2.0.a1 Prupe.1G101500_v2.0.a1 Prupe.1G101500_v2.0.a1
pyrus_communis pycom16g22640
rosa_chinensis RchiOBHm_Chr4g0405361
rosa_laevigata RLG00000008848
rosa_multiflora Rmu_sc0000161.1_g000080
rosa_roxburghii Rroxscaffold_5G00349790
rosa_rugosa Rorug04G0057700
rosa_samantha Rh4AG131200 Rh4BG125800 Rh4CG138100 Rh4DG125200
rosa_wichuraiana Rw4G010630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1055
AccB1I GGYRCC 1 cut(s) 341
AccI GTMKAC 1 cut(s) 314
AccII CGCG 1 cut(s) 417
AciI CCGC 8 cut(s) 71, 417, 535, 652, 782, 967, 1008, 1481
AclWI GGATC 1 cut(s) 773
AcsI RAATTY 1 cut(s) 482
AcuI CTGAAG 2 cut(s) 60, 1368
AdeI CACNNNGTG 1 cut(s) 683
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 2 cut(s) 379, 1188
AflIII ACRYGT 3 cut(s) 18, 317, 1143
AgsI TTSAA 5 cut(s) 908, 924, 1157, 1186, 1256
AjnI CCWGG 1 cut(s) 613
AluBI AGCT 4 cut(s) 891, 918, 936, 1286
AluI AGCT 4 cut(s) 891, 918, 936, 1286
Alw21I GWGCWC 2 cut(s) 798, 863
Alw26I GTCTC 1 cut(s) 1256
Alw44I GTGCAC 2 cut(s) 794, 859
AlwI GGATC 1 cut(s) 773
AlwNI CAGNNNCTG 1 cut(s) 83
Ama87I CYCGRG 1 cut(s) 388
AoxI GGCC 2 cut(s) 79, 871
ApaLI GTGCAC 2 cut(s) 794, 859
ApeKI GCWGC 6 cut(s) 420, 557, 933, 1025, 1283, 1483
ApoI RAATTY 1 cut(s) 482
ArsI GACNNNNNNTTYG 2 cut(s) 1313, 1345
Asp700I GAANNNNTTC 1 cut(s) 594
AspLEI GCGC 1 cut(s) 431
AspS9I GGNCC 3 cut(s) 80, 872, 1343
AsuC2I CCSGG 4 cut(s) 110, 214, 389, 390
AsuHPI GGTGA 3 cut(s) 1082, 1271, 1451
AvaI CYCGRG 1 cut(s) 388
AvaII GGWCC 1 cut(s) 1343
BaeGI GKGCMC 2 cut(s) 798, 863
BanI GGYRCC 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 402
Bbv12I GWGCWC 2 cut(s) 798, 863
BbvI GCAGC 5 cut(s) 407, 544, 945, 1037, 1295
BccI CCATC 1 cut(s) 842
BciT130I CCWGG 1 cut(s) 615
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 4 cut(s) 110, 214, 389, 390
BcoDI GTCTC 1 cut(s) 1256
BfaI CTAG 2 cut(s) 119, 656
BfmI CTRYAG 2 cut(s) 1324, 1467
BfoI RGCGCY 1 cut(s) 432
BglII AGATCT 1 cut(s) 7
BisI GCNGC 9 cut(s) 72, 418, 421, 558, 653, 934, 1026, 1284, 1484
BlsI GCNGC 9 cut(s) 73, 419, 422, 559, 654, 935, 1027, 1285, 1485
Bme1390I CCNGG 5 cut(s) 110, 214, 389, 390, 615
Bme18I GGWCC 1 cut(s) 1343
BmeT110I CYCGRG 1 cut(s) 388
BmgT120I GGNCC 3 cut(s) 80, 872, 1343
BmiI GGNNCC 1 cut(s) 343
BmrFI CCNGG 5 cut(s) 110, 214, 389, 390, 615
BmsI GCATC 5 cut(s) 41, 646, 920, 1075, 1165
BpiI GAAGAC 1 cut(s) 402
BpuMI CCSGG 4 cut(s) 110, 214, 389, 390
BsaI GGTCTC 1 cut(s) 1256
BsaJI CCNNGG 5 cut(s) 108, 388, 389, 424, 578
BsaWI WCCGGW 1 cut(s) 160
Bsc4I CCNNNNNNNGG 2 cut(s) 379, 1188
Bse118I RCCGGY 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 706
Bse3DI GCAATG 2 cut(s) 139, 1003
BseBI CCWGG 1 cut(s) 615
BseDI CCNNGG 5 cut(s) 108, 388, 389, 424, 578
BseGI GGATG 3 cut(s) 265, 637, 935
BseLI CCNNNNNNNGG 2 cut(s) 379, 1188
BseMI GCAATG 2 cut(s) 139, 1003
BseNI ACTGG 1 cut(s) 706
BseRI GAGGAG 1 cut(s) 746
BseSI GKGCMC 2 cut(s) 798, 863
BseXI GCAGC 5 cut(s) 407, 544, 945, 1037, 1295
BsgI GTGCAG 1 cut(s) 1355
Bsh1236I CGCG 1 cut(s) 417
BshFI GGCC 2 cut(s) 81, 873
BshNI GGYRCC 1 cut(s) 341
BsiHKAI GWGCWC 2 cut(s) 798, 863
BsiHKCI CYCGRG 1 cut(s) 388
BsiSI CCGG 7 cut(s) 68, 110, 123, 161, 214, 380, 389
BslFI GGGAC 1 cut(s) 1408
BslI CCNNNNNNNGG 2 cut(s) 379, 1188
BsmAI GTCTC 1 cut(s) 1256
BsmFI GGGAC 1 cut(s) 1408
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 2 cut(s) 81, 873
Bso31I GGTCTC 1 cut(s) 1256
BsoBI CYCGRG 1 cut(s) 388
Bsp1286I GDGCHC 2 cut(s) 798, 863
Bsp143I GATC 4 cut(s) 7, 262, 778, 981
Bsp19I CCATGG 1 cut(s) 578
BspACI CCGC 8 cut(s) 71, 417, 535, 652, 782, 967, 1008, 1481
BspANI GGCC 2 cut(s) 81, 873
BspFNI CGCG 1 cut(s) 417
BspHI TCATGA 1 cut(s) 562
BspLI GGNNCC 1 cut(s) 343
BspPI GGATC 1 cut(s) 773
BspQI GCTCTTC 1 cut(s) 613
BspT107I GGYRCC 1 cut(s) 341
BspTNI GGTCTC 1 cut(s) 1256
BsrDI GCAATG 2 cut(s) 139, 1003
BsrFI RCCGGY 1 cut(s) 379
BsrI ACTGG 1 cut(s) 706
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 5 cut(s) 108, 388, 389, 424, 578
BssMI GATC 4 cut(s) 7, 262, 778, 981
BssT1I CCWWGG 2 cut(s) 424, 578
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 4 cut(s) 1217, 1232, 1379, 1418
Bst6I CTCTTC 4 cut(s) 162, 283, 613, 723
BstAPI GCANNNNNTGC 1 cut(s) 38
BstC8I GCNNGC 2 cut(s) 518, 669
BstDEI CTNAG 2 cut(s) 471, 748
BstDSI CCRYGG 1 cut(s) 578
BstF5I GGATG 3 cut(s) 265, 637, 935
BstFNI CGCG 1 cut(s) 417
BstH2I RGCGCY 1 cut(s) 432
BstHHI GCGC 1 cut(s) 431
BstKTI GATC 4 cut(s) 10, 265, 781, 984
BstMAI GTCTC 1 cut(s) 1256
BstMBI GATC 4 cut(s) 7, 262, 778, 981
BstMWI GCNNNNNNNGC 6 cut(s) 38, 426, 513, 879, 888, 897
BstNI CCWGG 1 cut(s) 615
BstNSI RCATGY 4 cut(s) 22, 321, 671, 1147
BstSCI CCNGG 5 cut(s) 108, 212, 387, 388, 613
BstSFI CTRYAG 2 cut(s) 1324, 1467
BstSLI GKGCMC 2 cut(s) 798, 863
BstUI CGCG 1 cut(s) 417
BstV1I GCAGC 5 cut(s) 407, 544, 945, 1037, 1295
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 2 cut(s) 7, 778
BstXI CCANNNNNNTGG 2 cut(s) 352, 648
BstYI RGATCY 2 cut(s) 7, 778
BsuRI GGCC 2 cut(s) 81, 873
BtgI CCRYGG 1 cut(s) 578
BtsCI GGATG 3 cut(s) 265, 637, 935
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 2 cut(s) 518, 669
CaiI CAGNNNCTG 1 cut(s) 83
CciI TCATGA 1 cut(s) 562
CfoI GCGC 1 cut(s) 431
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 3 cut(s) 80, 872, 1343
Cfr9I CCCGGG 1 cut(s) 388
CseI GACGC 1 cut(s) 813
Csp6I GTAC 1 cut(s) 385
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 2 cut(s) 471, 748
DpnI GATC 4 cut(s) 9, 264, 780, 983
DpnII GATC 4 cut(s) 7, 262, 778, 981
DraI TTTAAA 1 cut(s) 487
DraIII CACNNNGTG 1 cut(s) 683
DrdI GACNNNNNNGTC 1 cut(s) 1055
DseDI GACNNNNNNGTC 1 cut(s) 1055
Eam1104I CTCTTC 4 cut(s) 162, 283, 613, 723
EarI CTCTTC 4 cut(s) 162, 283, 613, 723
EciI GGCGGA 1 cut(s) 771
Eco130I CCWWGG 2 cut(s) 424, 578
Eco31I GGTCTC 1 cut(s) 1256
Eco47I GGWCC 1 cut(s) 1343
Eco57I CTGAAG 2 cut(s) 60, 1368
Eco88I CYCGRG 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 613
EcoT14I CCWWGG 2 cut(s) 424, 578
EcoT22I ATGCAT 1 cut(s) 914
ErhI CCWWGG 2 cut(s) 424, 578
FaqI GGGAC 1 cut(s) 1408
FauNDI CATATG 2 cut(s) 721, 1318
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 1 cut(s) 314
Fnu4HI GCNGC 9 cut(s) 72, 418, 421, 558, 653, 934, 1026, 1284, 1484
FokI GGATG 3 cut(s) 272, 624, 942
Fsp4HI GCNGC 9 cut(s) 72, 418, 421, 558, 653, 934, 1026, 1284, 1484
FspBI CTAG 2 cut(s) 119, 656
GlaI GCGC 1 cut(s) 430
GluI GCNGC 9 cut(s) 72, 418, 421, 558, 653, 934, 1026, 1284, 1484
HaeII RGCGCY 1 cut(s) 432
HaeIII GGCC 2 cut(s) 81, 873
HapII CCGG 7 cut(s) 68, 110, 123, 161, 214, 380, 389
HgaI GACGC 1 cut(s) 813
HhaI GCGC 1 cut(s) 431
Hin6I GCGC 1 cut(s) 429
HinP1I GCGC 1 cut(s) 429
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
HinfI GANTC 8 cut(s) 154, 198, 223, 237, 311, 761, 1031, 1153
HpaII CCGG 7 cut(s) 68, 110, 123, 161, 214, 380, 389
HphI GGTGA 3 cut(s) 1082, 1271, 1451
Hpy166II GTNNAC 5 cut(s) 315, 385, 796, 861, 1478
Hpy188I TCNGA 4 cut(s) 232, 310, 1209, 1372
Hpy188III TCNNGA 6 cut(s) 241, 283, 563, 941, 1168, 1346
Hpy8I GTNNAC 5 cut(s) 315, 385, 796, 861, 1478
HpyAV CCTTC 7 cut(s) 66, 265, 335, 766, 795, 1192, 1250
HpyCH4III ACNGT 4 cut(s) 1217, 1232, 1379, 1418
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 426, 513, 879, 888, 897
HpyF3I CTNAG 2 cut(s) 471, 748
HspAI GCGC 1 cut(s) 429
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 4 cut(s) 7, 262, 778, 981
LguI GCTCTTC 1 cut(s) 613
LmnI GCTCC 1 cut(s) 1436
Lsp1109I GCAGC 5 cut(s) 407, 544, 945, 1037, 1295
LweI GCATC 5 cut(s) 41, 646, 920, 1075, 1165
MaeI CTAG 2 cut(s) 119, 656
MaeIII GTNAC 1 cut(s) 199
MalI GATC 4 cut(s) 9, 264, 780, 983
MboI GATC 4 cut(s) 7, 262, 778, 981
MboII GAAGA 8 cut(s) 56, 179, 300, 407, 630, 740, 788, 1461
MfeI CAATTG 1 cut(s) 1360
MflI RGATCY 2 cut(s) 7, 778
MhlI GDGCHC 2 cut(s) 798, 863
MluCI AATT 8 cut(s) 86, 103, 186, 482, 865, 877, 987, 1360
MlyI GAGTC 3 cut(s) 207, 246, 320
MmeI TCCRAC 2 cut(s) 611, 665
Mph1103I ATGCAT 1 cut(s) 914
MroXI GAANNNNTTC 1 cut(s) 594
MseI TTAA 7 cut(s) 183, 486, 543, 602, 738, 822, 993
MslI CAYNNNNRTG 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 936
MspI CCGG 7 cut(s) 68, 110, 123, 161, 214, 380, 389
MspR9I CCNGG 5 cut(s) 110, 214, 389, 390, 615
MunI CAATTG 1 cut(s) 1360
Mva1269I GAATGC 1 cut(s) 134
MvaI CCWGG 1 cut(s) 615
MvnI CGCG 1 cut(s) 417
MwoI GCNNNNNNNGC 6 cut(s) 38, 426, 513, 879, 888, 897
NciI CCSGG 4 cut(s) 110, 214, 389, 390
NcoI CCATGG 1 cut(s) 578
NdeI CATATG 2 cut(s) 721, 1318
NdeII GATC 4 cut(s) 7, 262, 778, 981
NlaIV GGNNCC 1 cut(s) 343
NmuCI GTSAC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 914
NspI RCATGY 4 cut(s) 22, 321, 671, 1147
PaeI GCATGC 1 cut(s) 671
PagI TCATGA 1 cut(s) 562
PciI ACATGT 3 cut(s) 18, 317, 1143
PciSI GCTCTTC 1 cut(s) 613
PcsI WCGNNNNNNNCGW 1 cut(s) 446
PctI GAATGC 1 cut(s) 134
PdmI GAANNNNTTC 1 cut(s) 594
PfeI GAWTC 5 cut(s) 154, 223, 761, 1031, 1153
PflFI GACNNNGTC 1 cut(s) 236
PkrI GCNGC 9 cut(s) 73, 419, 422, 559, 654, 935, 1027, 1285, 1485
PleI GAGTC 3 cut(s) 206, 245, 319
PpsI GAGTC 3 cut(s) 206, 245, 319
PscI ACATGT 3 cut(s) 18, 317, 1143
Psp6I CCWGG 1 cut(s) 613
PspGI CCWGG 1 cut(s) 613
PspN4I GGNNCC 1 cut(s) 343
PspPI GGNCC 3 cut(s) 80, 872, 1343
PstNI CAGNNNCTG 1 cut(s) 83
PsuI RGATCY 2 cut(s) 7, 778
PsyI GACNNNGTC 1 cut(s) 236
PvuII CAGCTG 1 cut(s) 936
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 23
SalI GTCGAC 1 cut(s) 313
SapI GCTCTTC 1 cut(s) 613
SaqAI TTAA 7 cut(s) 183, 486, 543, 602, 738, 822, 993
SatI GCNGC 9 cut(s) 72, 418, 421, 558, 653, 934, 1026, 1284, 1484
Sau3AI GATC 4 cut(s) 7, 262, 778, 981
Sau96I GGNCC 3 cut(s) 80, 872, 1343
SchI GAGTC 3 cut(s) 207, 246, 320
ScrFI CCNGG 5 cut(s) 110, 214, 389, 390, 615
SduI GDGCHC 2 cut(s) 798, 863
SfaNI GCATC 5 cut(s) 41, 646, 920, 1075, 1165
SfcI CTRYAG 2 cut(s) 1324, 1467
SinI GGWCC 1 cut(s) 1343
SmaI CCCGGG 1 cut(s) 390
SmiI ATTTAAAT 1 cut(s) 487
SmiMI CAYNNNNRTG 1 cut(s) 23
SphI GCATGC 1 cut(s) 671
Sse9I AATT 8 cut(s) 86, 103, 186, 482, 865, 877, 987, 1360
SsiI CCGC 8 cut(s) 71, 417, 535, 652, 782, 967, 1008, 1481
SspI AATATT 1 cut(s) 811
SspMI CTAG 2 cut(s) 119, 656
StyD4I CCNGG 5 cut(s) 108, 212, 387, 388, 613
StyI CCWWGG 2 cut(s) 424, 578
SwaI ATTTAAAT 1 cut(s) 487
TaaI ACNGT 4 cut(s) 1217, 1232, 1379, 1418
TaqI TCGA 2 cut(s) 314, 1059
TasI AATT 8 cut(s) 86, 103, 186, 482, 865, 877, 987, 1360
TauI GCSGC 3 cut(s) 74, 420, 655
TfiI GAWTC 5 cut(s) 154, 223, 761, 1031, 1153
Tru1I TTAA 7 cut(s) 183, 486, 543, 602, 738, 822, 993
Tru9I TTAA 7 cut(s) 183, 486, 543, 602, 738, 822, 993
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 6 cut(s) 420, 557, 933, 1025, 1283, 1483
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 3 cut(s) 1042, 1130, 1145
TspGWI ACGGA 1 cut(s) 216
TspMI CCCGGG 1 cut(s) 388
TspRI CASTG 1 cut(s) 208
Tth111I GACNNNGTC 1 cut(s) 236
VneI GTGCAC 2 cut(s) 794, 859
VpaK11BI GGWCC 1 cut(s) 1343
XapI RAATTY 1 cut(s) 482
XceI RCATGY 4 cut(s) 22, 321, 671, 1147
XmaI CCCGGG 1 cut(s) 388
XmiI GTMKAC 1 cut(s) 314
XmnI GAANNNNTTC 1 cut(s) 594
XspI CTAG 2 cut(s) 119, 656
Zsp2I ATGCAT 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.