Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000161.1

Orthogroup ID

OG0013529

Physical Location & Seq

Genomic Coordinates Reverse (-)

295113 .. 301612

Gene Structure 6500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000161.1_g000080.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

atgccggacctcgcgaatctctctatctcggattctccgaccgtcactcactgccctaacatcaaatcccactcggccacaacagagagctcggtcaaaaccctagcgtttgaccgcgactgcgaccagaggacgatggggttcgcgactctgcacaacgccaacggtgctggaagttccaattgcaagagtttggaggaccatgtcaggcattgggtcacccacagaatggaatcggggattgccgagacccgcagctcattgcctttcctttgcggtgcgaagacattggaggtattctttcgcttgcctctaccttacactgctgaggagttcaagattgacctaacttggaaacacacggagaacaatatagagcctcctccatatacgcacatcaggcgtaatatttacctagtcaagaagaagcgagatgatgttgatgatgatgttggatgcagaggttgcacttctgtatgctctctggattgtgtttgcagggttcaatgcataagctgttcaaaggcttgccattgttctgaaaattgcacaaaccgtccatttctgaaggagaagaagatcagaatcgtcaagaccgcacactgtggttggggagccgaggcagctgagtccgttaagaaaggcgatttcataatcgagtatattggggaagttattaatgatgcgttgtgcgaacaaaggctttgggacatgaaatacaaagaagtgaagaatttctatatgtgtgaaattcgaaaagacttcacaatcgacgctacttttaaaggaaatccatcacgatttctaaatcacagctgtgatccgaactgcgtccttgaaaagtggcaagttgagggggaaacacgtgtcggtgtgtttgctgcaagatcaatagaagtcggagagccattaacatatgattatagatttgtgcaatttggacccgaggtgaagtgctgttgcggtgcatcaaattgtcaaggctatcttggcatcaagaaaaagatttgtaaggtggatcttttctgggggaagaaacgcaagagaacaccaactgcttgcatagctatccttaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

359

Amino Acids

40.66

Weight (kDa)

8.41

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30860
fragaria_vesca	FvH4_4g08820 FvH4_4g08820
malus_domestica	MD16G1258900.v1.1
prunus_persica	Prupe.1G101500_v2.0.a1 Prupe.1G101500_v2.0.a1 Prupe.1G101500_v2.0.a1
pyrus_communis	pycom16g22640
rosa_chinensis	RchiOBHm_Chr4g0405361
rosa_laevigata	RLG00000008848
rosa_multiflora	Rmu_sc0000161.1_g000080
rosa_roxburghii	Rroxscaffold_5G00349790
rosa_rugosa	Rorug04G0057700
rosa_samantha	Rh4AG131200 Rh4BG125800 Rh4CG138100 Rh4DG125200
rosa_wichuraiana	Rw4G010630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccII	CGCG	3 cut(s)	14, 117, 146
AciI	CCGC	5 cut(s)	115, 253, 276, 597, 963
AclWI	GGATC	2 cut(s)	815, 1026
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	2 cut(s)	733, 750
AcuI	CTGAAG	1 cut(s)	587
AcvI	CACGTG	1 cut(s)	866
AdeI	CACNNNGTG	1 cut(s)	605
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflIII	ACRYGT	2 cut(s)	863, 865
AgsI	TTSAA	4 cut(s)	337, 506, 522, 839
AleI	CACNNNNGTG	1 cut(s)	816
AluBI	AGCT	6 cut(s)	90, 258, 516, 626, 816, 1067
AluI	AGCT	6 cut(s)	90, 258, 516, 626, 816, 1067
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	2 cut(s)	815, 1026
Ama87I	CYCGRG	1 cut(s)	944
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	3 cut(s)	255, 623, 881
ApoI	RAATTY	2 cut(s)	733, 750
AseI	ATTAAT	1 cut(s)	678
Asp700I	GAANNNNTTC	1 cut(s)	734
AspS9I	GGNCC	3 cut(s)	7, 199, 941
AsuHPI	GGTGA	2 cut(s)	211, 961
AsuII	TTCGAA	1 cut(s)	754
AvaI	CYCGRG	1 cut(s)	944
AvaII	GGWCC	3 cut(s)	7, 199, 941
AxyI	CCTNAGG	1 cut(s)	1073
BanII	GRGCYC	1 cut(s)	92
BbrPI	CACGTG	1 cut(s)	866
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	92
BbvCI	CCTCAGC	1 cut(s)	327
BbvI	GCAGC	3 cut(s)	267, 635, 868
BccI	CCATC	2 cut(s)	130, 802
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	2 cut(s)	104, 416
BisI	GCNGC	3 cut(s)	256, 624, 882
BlsI	GCNGC	3 cut(s)	257, 625, 883
Bme18I	GGWCC	3 cut(s)	7, 199, 941
BmeT110I	CYCGRG	1 cut(s)	944
BmgT120I	GGNCC	3 cut(s)	7, 199, 941
BmiI	GGNNCC	2 cut(s)	616, 943
BmsI	GCATC	4 cut(s)	446, 673, 977, 1002
BpiI	GAAGAC	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	327
Bpu14I	TTCGAA	1 cut(s)	754
BsaAI	YACGTR	1 cut(s)	866
BsaBI	GATNNNNATC	1 cut(s)	584
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	618, 945
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse21I	CCTNAGG	1 cut(s)	1073
Bse3DI	GCAATG	1 cut(s)	260
Bse8I	GATNNNNATC	1 cut(s)	584
BseDI	CCNNGG	2 cut(s)	618, 945
BseGI	GGATG	1 cut(s)	461
BseJI	GATNNNNATC	1 cut(s)	584
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	2 cut(s)	318, 618
BseRI	GAGGAG	2 cut(s)	344, 372
BseXI	GCAGC	3 cut(s)	267, 635, 868
BsgI	GTGCAG	1 cut(s)	137
Bsh1236I	CGCG	3 cut(s)	14, 117, 146
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	77
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	92
BsiHKCI	CYCGRG	1 cut(s)	944
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	722
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	722
BsnI	GGCC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	242
BsoBI	CYCGRG	1 cut(s)	944
Bsp119I	TTCGAA	1 cut(s)	754
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	4 cut(s)	579, 820, 887, 1018
Bsp68I	TCGCGA	2 cut(s)	14, 146
BspACI	CCGC	5 cut(s)	115, 253, 276, 597, 963
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	2 cut(s)	319, 619
BspFNI	CGCG	3 cut(s)	14, 117, 146
BspLI	GGNNCC	2 cut(s)	616, 943
BspPI	GGATC	2 cut(s)	815, 1026
BspT104I	TTCGAA	1 cut(s)	754
BspTNI	GGTCTC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	260
BssECI	CCNNGG	2 cut(s)	618, 945
BssMI	GATC	4 cut(s)	579, 820, 887, 1018
Bst4CI	ACNGT	4 cut(s)	43, 167, 557, 605
BstAPI	GCANNNNNTGC	1 cut(s)	465
BstBAI	YACGTR	1 cut(s)	866
BstBI	TTCGAA	1 cut(s)	754
BstC8I	GCNNGC	3 cut(s)	308, 529, 1060
BstDEI	CTNAG	3 cut(s)	327, 627, 1073
BstEII	GGTNACC	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	461
BstFNI	CGCG	3 cut(s)	14, 117, 146
BstKTI	GATC	4 cut(s)	582, 823, 890, 1021
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	4 cut(s)	579, 820, 887, 1018
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	6 cut(s)	167, 400, 465, 623, 990, 1064
BstPI	GGTNACC	1 cut(s)	217
BstUI	CGCG	3 cut(s)	14, 117, 146
BstV1I	GCAGC	3 cut(s)	267, 635, 868
BstV2I	GAAGAC	1 cut(s)	290
BstX2I	RGATCY	1 cut(s)	1018
BstYI	RGATCY	1 cut(s)	1018
Bsu36I	CCTNAGG	1 cut(s)	1073
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	461
BtsI	GCAGTG	2 cut(s)	49, 321
BtsIMutI	CAGTG	3 cut(s)	49, 321, 601
BtuMI	TCGCGA	2 cut(s)	14, 146
Cac8I	GCNNGC	3 cut(s)	308, 529, 1060
Cfr13I	GGNCC	3 cut(s)	7, 199, 941
CseI	GACGC	2 cut(s)	782, 820
CviAII	CATG	2 cut(s)	203, 712
DdeI	CTNAG	3 cut(s)	327, 627, 1073
DpnI	GATC	4 cut(s)	581, 822, 889, 1020
DpnII	GATC	4 cut(s)	579, 820, 887, 1018
DraI	TTTAAA	1 cut(s)	784
DraIII	CACNNNGTG	1 cut(s)	605
EaeI	YGGCCR	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	242
Eco47I	GGWCC	3 cut(s)	7, 199, 941
Eco53kI	GAGCTC	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	587
Eco72I	CACGTG	1 cut(s)	866
Eco81I	CCTNAGG	1 cut(s)	1073
Eco88I	CYCGRG	1 cut(s)	944
Eco91I	GGTNACC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	90
EcoO65I	GGTNACC	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	512
EcoT38I	GRGCYC	1 cut(s)	92
FaeI	CATG	2 cut(s)	206, 715
FalI	AAGNNNNNCTT	2 cut(s)	972, 1004
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	2 cut(s)	202, 711
FauI	CCCGC	1 cut(s)	260
FauNDI	CATATG	1 cut(s)	916
Fnu4HI	GCNGC	3 cut(s)	256, 624, 882
FokI	GGATG	1 cut(s)	468
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	3 cut(s)	256, 624, 882
FspBI	CTAG	2 cut(s)	104, 416
GluI	GCNGC	3 cut(s)	256, 624, 882
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	5
HgaI	GACGC	2 cut(s)	782, 820
Hin1II	CATG	2 cut(s)	206, 715
HinfI	GANTC	6 cut(s)	16, 32, 148, 233, 585, 629
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	2 cut(s)	211, 961
Hpy188I	TCNGA	7 cut(s)	31, 39, 541, 567, 584, 825, 902
Hpy188III	TCNNGA	8 cut(s)	13, 145, 337, 421, 485, 592, 798, 997
Hpy99I	CGWCG	1 cut(s)	776
HpyAV	CCTTC	1 cut(s)	562
HpyCH4III	ACNGT	4 cut(s)	43, 167, 557, 605
HpyCH4IV	ACGT	1 cut(s)	865
HpyF10VI	GCNNNNNNNGC	6 cut(s)	167, 400, 465, 623, 990, 1064
HpyF3I	CTNAG	3 cut(s)	327, 627, 1073
HpySE526I	ACGT	1 cut(s)	865
Hsp92II	CATG	2 cut(s)	206, 715
Kzo9I	GATC	4 cut(s)	579, 820, 887, 1018
LmnI	GCTCC	1 cut(s)	614
LpnPI	CCDG	8 cut(s)	18, 140, 156, 193, 385, 470, 484, 1012
Lsp1109I	GCAGC	3 cut(s)	267, 635, 868
LweI	GCATC	4 cut(s)	446, 673, 977, 1002
MaeI	CTAG	2 cut(s)	104, 416
MaeII	ACGT	1 cut(s)	865
MaeIII	GTNAC	2 cut(s)	43, 217
MalI	GATC	4 cut(s)	581, 822, 889, 1020
MboI	GATC	4 cut(s)	579, 820, 887, 1018
MboII	GAAGA	6 cut(s)	295, 436, 586, 589, 742, 1045
MfeI	CAATTG	1 cut(s)	181
MflI	RGATCY	1 cut(s)	1018
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	6 cut(s)	181, 544, 733, 750, 935, 973
MlyI	GAGTC	2 cut(s)	142, 638
MmeI	TCCRAC	3 cut(s)	62, 433, 880
Mph1103I	ATGCAT	1 cut(s)	512
MroXI	GAANNNNTTC	1 cut(s)	734
MseI	TTAA	4 cut(s)	636, 678, 783, 911
MslI	CAYNNNNRTG	1 cut(s)	816
MspA1I	CMGCKG	2 cut(s)	626, 816
MspI	CCGG	1 cut(s)	5
MunI	CAATTG	1 cut(s)	181
MvnI	CGCG	3 cut(s)	14, 117, 146
MwoI	GCNNNNNNNGC	6 cut(s)	167, 400, 465, 623, 990, 1064
NdeI	CATATG	1 cut(s)	916
NdeII	GATC	4 cut(s)	579, 820, 887, 1018
NlaIII	CATG	2 cut(s)	206, 715
NlaIV	GGNNCC	2 cut(s)	616, 943
NmeAIII	GCCGAG	3 cut(s)	53, 271, 643
NmuCI	GTSAC	2 cut(s)	43, 217
NruI	TCGCGA	2 cut(s)	14, 146
NsiI	ATGCAT	1 cut(s)	512
NspV	TTCGAA	1 cut(s)	754
OliI	CACNNNNGTG	1 cut(s)	816
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	734
PfeI	GAWTC	4 cut(s)	16, 32, 233, 585
PflFI	GACNNNGTC	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	3 cut(s)	257, 625, 883
PleI	GAGTC	2 cut(s)	142, 637
PmaCI	CACGTG	1 cut(s)	866
PmlI	CACGTG	1 cut(s)	866
PpsI	GAGTC	2 cut(s)	142, 637
Ppu21I	YACGTR	1 cut(s)	866
PshBI	ATTAAT	1 cut(s)	678
Psp124BI	GAGCTC	1 cut(s)	92
PspCI	CACGTG	1 cut(s)	866
PspEI	GGTNACC	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	616, 943
PspPI	GGNCC	3 cut(s)	7, 199, 941
PsuI	RGATCY	1 cut(s)	1018
PsyI	GACNNNGTC	1 cut(s)	203
PvuII	CAGCTG	2 cut(s)	626, 816
RruI	TCGCGA	2 cut(s)	14, 146
RseI	CAYNNNNRTG	1 cut(s)	816
SacI	GAGCTC	1 cut(s)	92
SaqAI	TTAA	4 cut(s)	636, 678, 783, 911
SatI	GCNGC	3 cut(s)	256, 624, 882
Sau3AI	GATC	4 cut(s)	579, 820, 887, 1018
Sau96I	GGNCC	3 cut(s)	7, 199, 941
SchI	GAGTC	2 cut(s)	142, 638
SduI	GDGCHC	1 cut(s)	92
SfaNI	GCATC	4 cut(s)	446, 673, 977, 1002
SfuI	TTCGAA	1 cut(s)	754
SinI	GGWCC	3 cut(s)	7, 199, 941
SmiMI	CAYNNNNRTG	1 cut(s)	816
Sse9I	AATT	6 cut(s)	181, 544, 733, 750, 935, 973
SsiI	CCGC	5 cut(s)	115, 253, 276, 597, 963
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	2 cut(s)	104, 416
SstI	GAGCTC	1 cut(s)	92
TaaI	ACNGT	4 cut(s)	43, 167, 557, 605
TaiI	ACGT	1 cut(s)	868
TaqI	TCGA	3 cut(s)	657, 754, 771
TaqII	GACCGA	1 cut(s)	82
TasI	AATT	6 cut(s)	181, 544, 733, 750, 935, 973
TfiI	GAWTC	4 cut(s)	16, 32, 233, 585
Tru1I	TTAA	4 cut(s)	636, 678, 783, 911
Tru9I	TTAA	4 cut(s)	636, 678, 783, 911
TscAI	CASTG	3 cut(s)	56, 328, 608
TseFI	GTSAC	2 cut(s)	43, 217
TseI	GCWGC	3 cut(s)	255, 623, 881
Tsp45I	GTSAC	2 cut(s)	43, 217
TspDTI	ATGAA	2 cut(s)	640, 728
TspGWI	ACGGA	2 cut(s)	377, 622
TspRI	CASTG	3 cut(s)	56, 328, 608
Tth111I	GACNNNGTC	1 cut(s)	203
Van91I	CCANNNNNTGG	1 cut(s)	229
VpaK11BI	GGWCC	3 cut(s)	7, 199, 941
VspI	ATTAAT	1 cut(s)	678
XapI	RAATTY	2 cut(s)	733, 750
XmnI	GAANNNNTTC	1 cut(s)	734
XspI	CTAG	2 cut(s)	104, 416
Zsp2I	ATGCAT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.