Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011941

Physical Location & Seq

Genomic Coordinates Forward (+)

15373988 .. 15377172

Gene Structure 3185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G31780.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGAGTACCAGAGTGCTTGCGCAGGTGTTTATTACGGATTTGTGGACAGATCATACGCCCTGGCCGTTCAACCAGCTTCCCAGGAGCTATAATTTTCTGGTGAAACATGGAACTCTGTGGAAAATGACTTATTATGGTACATCTCCACGCATTGTTCATCAATCTAATTTTGCTGCAACTTCCACTTTTATTGCCAGGGAAATCGCCCAAGGGTTAATGAAATATCAACCAGATATCATAATCAGTGTTCATCCGTTGATGCAACATGTCCCACTTCGTGTCCTAAGATCAAAAGGCTTGCTTAAGAAAATCGTGTTCACCACGGTTATTACAGACTTAAGCACTTGCCATCCTACATGGTTTCATAAGCTTGTGACAAGATGTTATTGCCCATCAACAGAAGTGGCAAAAAGGGCTCAAAAAGCAGGACTTGAAACATCACAAATCAAAGTTTATGGCCTCCCTGTTCGACCTTCCTTTGTGAAACCAGTTCGCCCAAAGGTTGAATTAAGAAGGGAGCTAGGGATGGATGAGAATCTTCCAGCTGTTTTGTTAATGGGTGGAGGAGAAGGGATGGGTCCCATCGAGGCAACAGCAAGAGCACTTGCAGATGCTTTGTATGATAAGAATCTTGGTGAAGCAGTAGGTCAGGTTCTTATAATCTGTGGACGGAACAAGAAACTCCAAAGCAAATTAAGTTCCTTAGACTGGAAAATCCCTGTCCAGGTTAAGGGGTTTATAACGAAAATGGAGGAATGTATGGGTGCCTGTGACTGCATCATAACAAAGGCTGGTCCAGGCACTATAGCTGAAGCTATGATAAGAGGGTTACCGATAATCTTAAACGGTTACATCGCTGGTCAAGAGGCAGGGAATGTACCGTACGTGGTGGAAAACGGATGTGGGAAATTCTCAAAATCACCGAAAGAGATATCGAAGATTGTAGCGGATTGGTTTGGACCGGCATCGAAAGAGTTGGAGATAATGTCACAGAATGCATTGAGGCTGGCTAAACCAGAAGCAGTGTTCAAGATAGTGCATGATATGCACGAGCTTGTCCGTAAAAAAAATAGTCTTCCTCAACTCTCTTGCACTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006643 GO:0006664 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008610 GO:0009058 GO:0009247 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009668 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0016020 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0035250 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046509 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061024 GO:0061458 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

366

Amino Acids

40.61

Weight (kDa)

9.45

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	155 - 289	3.4e-49	Monogalactosyldiacylglycerol (MGDG) synthase
MGDG_synth	PF06925	314 - 349	2.5e-07	Monogalactosyldiacylglycerol (MGDG) synthase
Glyco_tran_28_C	PF04101	376 - 474	2.2e-11	Glycosyltransferase family 28 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31780 AT4G31780 AT4G31780
fragaria_vesca	FvH4_2g41310
malus_domestica	MD08G1052400.v1.1 MD15G1043100.v1.1
prunus_persica	Prupe.1G396500_v2.0.a1
pyrus_communis	pycom08g04370 pycom15g04010
rosa_chinensis	RchiOBHm_Chr6g0299211
rosa_laevigata	RLG00000011453
rosa_roxburghii	Rroxscaffold_7G00168910
rosa_rugosa	Rorug06G0286300 Rorug06G0286300
rosa_samantha	Rh6AG397400 Rh6BG406000 Rh6CG412100 Rh6DG398800
rosa_wichuraiana	Rw6G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	659, 740
AarI	CACCTGC	1 cut(s)	13
Acc16I	TGCGCA	1 cut(s)	21
Acc36I	ACCTGC	1 cut(s)	13
AccB1I	GGYRCC	1 cut(s)	764
AciI	CCGC	1 cut(s)	947
AcoI	YGGCCR	1 cut(s)	62
AcsI	RAATTY	1 cut(s)	908
AcuI	CTGAAG	1 cut(s)	831
AdeI	CACNNNGTG	1 cut(s)	278
AfaI	GTAC	4 cut(s)	7, 139, 879, 884
AfiI	CCNNNNNNNGG	3 cut(s)	708, 724, 730
AflII	CTTAAG	2 cut(s)	302, 337
AflIII	ACRYGT	1 cut(s)	265
AgsI	TTSAA	4 cut(s)	70, 434, 506, 1030
AjnI	CCWGG	5 cut(s)	59, 80, 194, 723, 796
AluBI	AGCT	8 cut(s)	76, 87, 370, 520, 545, 809, 815, 1054
AluI	AGCT	8 cut(s)	76, 87, 370, 520, 545, 809, 815, 1054
Alw21I	GWGCWC	1 cut(s)	604
AoxI	GGCC	2 cut(s)	62, 457
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	908
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	3 cut(s)	578, 794, 959
AsuHPI	GGTGA	4 cut(s)	112, 310, 647, 912
AvaII	GGWCC	3 cut(s)	578, 794, 959
BanI	GGYRCC	1 cut(s)	764
BanII	GRGCYC	1 cut(s)	418
BauI	CACGAG	1 cut(s)	1049
BbsI	GAAGAC	1 cut(s)	1067
Bbv12I	GWGCWC	1 cut(s)	604
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	5 cut(s)	357, 400, 520, 568, 590
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	5 cut(s)	61, 82, 196, 725, 798
BfaI	CTAG	1 cut(s)	521
BfmI	CTRYAG	1 cut(s)	804
BfrI	CTTAAG	2 cut(s)	302, 337
BfuAI	ACCTGC	1 cut(s)	13
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
Bme1390I	CCNGG	5 cut(s)	61, 82, 196, 725, 798
Bme18I	GGWCC	3 cut(s)	578, 794, 959
BmgT120I	GGNCC	3 cut(s)	578, 794, 959
BmiI	GGNNCC	3 cut(s)	579, 580, 766
BmrFI	CCNGG	5 cut(s)	61, 82, 196, 725, 798
BmsI	GCATC	4 cut(s)	249, 601, 786, 974
BpiI	GAAGAC	1 cut(s)	1067
BsaAI	YACGTR	1 cut(s)	886
BsaBI	GATNNNNATC	2 cut(s)	534, 627
BsaJI	CCNNGG	5 cut(s)	59, 80, 195, 208, 321
BsaXI	ACNNNNNCTCC	2 cut(s)	971, 1001
Bsc4I	CCNNNNNNNGG	3 cut(s)	708, 724, 730
Bse118I	RCCGGY	1 cut(s)	961
Bse1I	ACTGG	2 cut(s)	488, 713
Bse8I	GATNNNNATC	2 cut(s)	534, 627
BseBI	CCWGG	5 cut(s)	61, 82, 196, 725, 798
BseDI	CCNNGG	5 cut(s)	59, 80, 195, 208, 321
BseGI	GGATG	6 cut(s)	250, 349, 531, 535, 579, 905
BseJI	GATNNNNATC	2 cut(s)	534, 627
BseLI	CCNNNNNNNGG	3 cut(s)	708, 724, 730
BseNI	ACTGG	2 cut(s)	488, 713
BseRI	GAGGAG	1 cut(s)	579
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	2 cut(s)	64, 459
BshNI	GGYRCC	1 cut(s)	764
BsiHKAI	GWGCWC	1 cut(s)	604
BsiSI	CCGG	1 cut(s)	962
BsiWI	CGTACG	1 cut(s)	882
BslFI	GGGAC	2 cut(s)	254, 564
BslI	CCNNNNNNNGG	3 cut(s)	708, 724, 730
BsmFI	GGGAC	2 cut(s)	254, 564
BsmI	GAATGC	1 cut(s)	1000
BsnI	GGCC	2 cut(s)	64, 459
Bsp1286I	GDGCHC	2 cut(s)	418, 604
Bsp143I	GATC	2 cut(s)	49, 287
BspACI	CCGC	1 cut(s)	947
BspANI	GGCC	2 cut(s)	64, 459
BspLI	GGNNCC	3 cut(s)	579, 580, 766
BspMI	ACCTGC	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	764
BspTI	CTTAAG	2 cut(s)	302, 337
BsrFI	RCCGGY	1 cut(s)	961
BsrI	ACTGG	2 cut(s)	488, 713
BssAI	RCCGGY	1 cut(s)	961
BssECI	CCNNGG	5 cut(s)	59, 80, 195, 208, 321
BssMI	GATC	2 cut(s)	49, 287
BssSI	CACGAG	1 cut(s)	1049
BssT1I	CCWWGG	1 cut(s)	208
Bst2BI	CACGAG	1 cut(s)	1049
Bst2UI	CCWGG	5 cut(s)	61, 82, 196, 725, 798
Bst4CI	ACNGT	3 cut(s)	325, 848, 882
BstAFI	CTTAAG	2 cut(s)	302, 337
BstAPI	GCANNNNNTGC	1 cut(s)	1045
BstBAI	YACGTR	1 cut(s)	886
BstC8I	GCNNGC	3 cut(s)	18, 299, 1008
BstDEI	CTNAG	2 cut(s)	284, 703
BstDSI	CCRYGG	1 cut(s)	321
BstEII	GGTNACC	1 cut(s)	828
BstF5I	GGATG	6 cut(s)	250, 349, 531, 535, 579, 905
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	2 cut(s)	52, 290
BstMBI	GATC	2 cut(s)	49, 287
BstMWI	GCNNNNNNNGC	3 cut(s)	413, 422, 1045
BstNI	CCWGG	5 cut(s)	61, 82, 196, 725, 798
BstNSI	RCATGY	1 cut(s)	269
BstPI	GGTNACC	1 cut(s)	828
BstSCI	CCNGG	5 cut(s)	59, 80, 194, 723, 796
BstSFI	CTRYAG	1 cut(s)	804
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	1067
BsuRI	GGCC	2 cut(s)	64, 459
BtgI	CCRYGG	1 cut(s)	321
BtgZI	GCGATG	1 cut(s)	838
BtsCI	GGATG	6 cut(s)	250, 349, 531, 535, 579, 905
BtsI	GCAGTG	2 cut(s)	1029, 1092
BtsIMutI	CAGTG	3 cut(s)	250, 1029, 1092
BveI	ACCTGC	1 cut(s)	13
Cac8I	GCNNGC	3 cut(s)	18, 299, 1008
CfoI	GCGC	1 cut(s)	22
Cfr10I	RCCGGY	1 cut(s)	961
Cfr13I	GGNCC	3 cut(s)	578, 794, 959
Csp6I	GTAC	4 cut(s)	6, 138, 878, 883
CspCI	CAANNNNNGTGG	4 cut(s)	172, 207, 384, 419
CviAII	CATG	4 cut(s)	107, 266, 357, 1040
CviQI	GTAC	4 cut(s)	6, 138, 878, 883
DdeI	CTNAG	2 cut(s)	284, 703
DpnI	GATC	2 cut(s)	51, 289
DpnII	GATC	2 cut(s)	49, 287
DraIII	CACNNNGTG	1 cut(s)	278
EaeI	YGGCCR	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	418
Eco32I	GATATC	2 cut(s)	235, 933
Eco47I	GGWCC	3 cut(s)	578, 794, 959
Eco57I	CTGAAG	1 cut(s)	831
Eco91I	GGTNACC	1 cut(s)	828
EcoO109I	RGGNCCY	1 cut(s)	578
EcoO65I	GGTNACC	1 cut(s)	828
EcoRII	CCWGG	5 cut(s)	59, 80, 194, 723, 796
EcoRV	GATATC	2 cut(s)	235, 933
EcoT14I	CCWWGG	1 cut(s)	208
EcoT22I	ATGCAT	1 cut(s)	1000
EcoT38I	GRGCYC	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	4 cut(s)	110, 269, 360, 1043
FalI	AAGNNNNNCTT	4 cut(s)	285, 317, 414, 446
FaqI	GGGAC	2 cut(s)	254, 564
FatI	CATG	4 cut(s)	106, 265, 356, 1039
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	6 cut(s)	237, 336, 538, 542, 586, 912
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	521
FspI	TGCGCA	1 cut(s)	21
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	64, 459
HapII	CCGG	1 cut(s)	962
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	4 cut(s)	110, 269, 360, 1043
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	535, 628
HpaII	CCGG	1 cut(s)	962
HphI	GGTGA	4 cut(s)	112, 310, 647, 912
Hpy166II	GTNNAC	3 cut(s)	45, 318, 668
Hpy188III	TCNNGA	2 cut(s)	863, 1030
Hpy8I	GTNNAC	3 cut(s)	45, 318, 668
HpyAV	CCTTC	3 cut(s)	483, 507, 563
HpyCH4III	ACNGT	3 cut(s)	325, 848, 882
HpyCH4IV	ACGT	1 cut(s)	885
HpyCH4V	TGCA	8 cut(s)	176, 262, 608, 777, 998, 1039, 1048, 1092
HpyF10VI	GCNNNNNNNGC	3 cut(s)	413, 422, 1045
HpyF3I	CTNAG	2 cut(s)	284, 703
HpySE526I	ACGT	1 cut(s)	885
Hsp92II	CATG	4 cut(s)	110, 269, 360, 1043
HspAI	GCGC	1 cut(s)	20
KflI	GGGWCCC	1 cut(s)	578
Kzo9I	GATC	2 cut(s)	49, 287
LmnI	GCTCC	2 cut(s)	84, 517
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	4 cut(s)	249, 601, 786, 974
MaeI	CTAG	1 cut(s)	521
MaeII	ACGT	1 cut(s)	885
MaeIII	GTNAC	5 cut(s)	373, 770, 828, 848, 987
MalI	GATC	2 cut(s)	51, 289
MboI	GATC	2 cut(s)	49, 287
MboII	GAAGA	3 cut(s)	530, 949, 1067
MhlI	GDGCHC	2 cut(s)	418, 604
MluCI	AATT	5 cut(s)	91, 166, 506, 692, 908
MmeI	TCCRAC	1 cut(s)	957
MnlI	CCTC	8 cut(s)	470, 557, 580, 745, 818, 859, 996, 1089
Mph1103I	ATGCAT	1 cut(s)	1000
MseI	TTAA	8 cut(s)	215, 303, 338, 509, 554, 695, 729, 842
MspA1I	CMGCKG	1 cut(s)	545
MspCI	CTTAAG	2 cut(s)	302, 337
MspI	CCGG	1 cut(s)	962
MspR9I	CCNGG	5 cut(s)	61, 82, 196, 725, 798
Mva1269I	GAATGC	1 cut(s)	1000
MvaI	CCWGG	5 cut(s)	61, 82, 196, 725, 798
MwoI	GCNNNNNNNGC	3 cut(s)	413, 422, 1045
NdeII	GATC	2 cut(s)	49, 287
NlaIII	CATG	4 cut(s)	110, 269, 360, 1043
NlaIV	GGNNCC	3 cut(s)	579, 580, 766
NmuCI	GTSAC	3 cut(s)	373, 770, 987
NsbI	TGCGCA	1 cut(s)	21
NsiI	ATGCAT	1 cut(s)	1000
NspI	RCATGY	1 cut(s)	269
PaqCI	CACCTGC	1 cut(s)	13
PciI	ACATGT	1 cut(s)	265
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PctI	GAATGC	1 cut(s)	1000
PfeI	GAWTC	2 cut(s)	535, 628
Pfl23II	CGTACG	1 cut(s)	882
PkrI	GCNGC	1 cut(s)	175
Ppu21I	YACGTR	1 cut(s)	886
PpuMI	RGGWCCY	1 cut(s)	578
PscI	ACATGT	1 cut(s)	265
PsiI	TTATAA	2 cut(s)	659, 740
Psp5II	RGGWCCY	1 cut(s)	578
Psp6I	CCWGG	5 cut(s)	59, 80, 194, 723, 796
PspEI	GGTNACC	1 cut(s)	828
PspGI	CCWGG	5 cut(s)	59, 80, 194, 723, 796
PspLI	CGTACG	1 cut(s)	882
PspN4I	GGNNCC	3 cut(s)	579, 580, 766
PspPI	GGNCC	3 cut(s)	578, 794, 959
PspPPI	RGGWCCY	1 cut(s)	578
PsrI	GAACNNNNNNTAC	2 cut(s)	636, 668
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	4 cut(s)	7, 139, 879, 884
RsaNI	GTAC	4 cut(s)	6, 138, 878, 883
SaqAI	TTAA	8 cut(s)	215, 303, 338, 509, 554, 695, 729, 842
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	2 cut(s)	49, 287
Sau96I	GGNCC	3 cut(s)	578, 794, 959
ScrFI	CCNGG	5 cut(s)	61, 82, 196, 725, 798
SduI	GDGCHC	2 cut(s)	418, 604
SfaNI	GCATC	4 cut(s)	249, 601, 786, 974
SfcI	CTRYAG	1 cut(s)	804
SinI	GGWCC	3 cut(s)	578, 794, 959
SmlI	CTYRAG	2 cut(s)	302, 337
SmoI	CTYRAG	2 cut(s)	302, 337
Sse9I	AATT	5 cut(s)	91, 166, 506, 692, 908
SsiI	CCGC	1 cut(s)	947
SspMI	CTAG	1 cut(s)	521
StyD4I	CCNGG	5 cut(s)	59, 80, 194, 723, 796
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	3 cut(s)	325, 848, 882
TaiI	ACGT	1 cut(s)	888
TaqI	TCGA	4 cut(s)	469, 585, 935, 968
TasI	AATT	5 cut(s)	91, 166, 506, 692, 908
TfiI	GAWTC	2 cut(s)	535, 628
Tru1I	TTAA	8 cut(s)	215, 303, 338, 509, 554, 695, 729, 842
Tru9I	TTAA	8 cut(s)	215, 303, 338, 509, 554, 695, 729, 842
TscAI	CASTG	3 cut(s)	250, 1029, 1099
TseFI	GTSAC	3 cut(s)	373, 770, 987
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	3 cut(s)	373, 770, 987
TspDTI	ATGAA	4 cut(s)	146, 233, 239, 353
TspGWI	ACGGA	5 cut(s)	50, 243, 685, 912, 1049
TspRI	CASTG	3 cut(s)	250, 1029, 1099
Vha464I	CTTAAG	2 cut(s)	302, 337
VpaK11BI	GGWCC	3 cut(s)	578, 794, 959
XapI	RAATTY	1 cut(s)	908
XceI	RCATGY	1 cut(s)	269
XspI	CTAG	1 cut(s)	521
Zsp2I	ATGCAT	1 cut(s)	1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.