Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002838

Physical Location & Seq

Genomic Coordinates Reverse (-)

43643721 .. 43648568

Gene Structure 4848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0286300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

ATGAATTACCGCGTTCCCGAATTCGAAATGGAGGGAGATTACTCACTTCCGGCATCTTCTCCTCGCTCGAGAAAATCCACCATGCCGGAAGATGAGGTCATGGAGCTGCTGTGGCAGAACGGACAGGTGGTGATGCAGAGCCAAACCCAGAGGTCCGGACATAAGAAGTCCAAATATGACGCTGTTATTCCCGAACATACCAGACCTCCGGCAGCGCAACCGCCGCCGGTGAATCAACCTCAAAACCCGCAGCTGTTTATGCAGGAAGACGAAATGGCCGCCTGGCTACAGTGCCCTCTCGGCGACGACGATCCTTTCTGCGCCGAACTTCTTTATACCGATTCCAGAAACGCTCAATCCAACAACACCGCCGCCAACCTTCCACCGATTTCTCCGCCGCCGCCGCCTCGGCCGCCGATCCATCCGGCGCCGAGGAGGACCGAGCTCCCGAACTTCCTCCACTTCTCCAGGATGACCAACAACAACAACAATAAGTCTCGGTATGAATCCGCGGCGGTGGGGCCGTCGGGGTCGAAGAGGCTCGACGCCTCCAGCAACAATGCTAGCGGCGGCGGAAGAGGACTTGCCGCCACCGCTACGATGTCGTTCGGTGCCGCCGCCTCAGCCGGGAAAGACGCCGTGACGTGCGAGACGTCGCTGACGTCGTCCACCGGAGACTCCAGCGCGAGCGGCAGCCTAAGCGCCGAGCAGATGTCGATTCAGAAGCCGCCGCCGCCTCCGCCTCCGCCGCCGCCGGTGGAGGATCGGAAGCGCAAAGGGAGAGTGGCCGACGACGCCGAGTGTCAGAGCGAGGATGTGGAGTTTGAATCTGGGAGTGGAAAGAAGCAGACCCGGGGATCGAGTTCTACTAAGAGATCACGAGCTGCGGAGGTCCACAATCTCTCCGAAAGGAGACGTCGAGATAGGATCAATGAGAAGATGAGGTCTTTGCAAGAATTAATACCTCGTTGCAATAAGTCGGACAAAGCGTCAATGCTGGATGAAGCGATTGAGTATTTGAAATCACTTCAGTTGCAAGTACAGATGATGTCCATGGGATGCGGCATGGTCCCTATGATGTTTCCTGGTGTTCAGCAGTATATGCCAATGGGGATGGGAATGGGAATGGGCATGGGCATGGGAATGGGAATGGAAATGGGAATGAGTCGGCCTGTGATGCCATTTCCGAATGTGTTAGCTGGTTCCACCATTCCAACAGCACCTGCAACAGCTCATATGGGACCGAGGTTCCCTTTGCCACCATTTCAATTGCAGACTATGCTTCCCAATGATCCTAACAGAGTCCAAGCAACAAATCAGTCTGAACATATGTTAAACTCGCTTGGGACACAAAATCAGAACCAATCACGAGTAACAAATTTTGCGGATCCTTACCAGCAGTACTTCACTCCCCAGCAAATGCGGATGCAACTACAGCAGAATCAAGCCATGCCTCAGCCAAGTTCTAGCAAGCCGAGTTCCAGTATGGGACCTGAAAATCAAGAGAGTCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006643 GO:0006664 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008610 GO:0009058 GO:0009247 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009668 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0016020 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0035250 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046509 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061024 GO:0061458 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

505

Amino Acids

55.37

Weight (kDa)

7.09

Isoelectric Point (pI)

71.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	297 - 344	6.4e-13	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	303 - 346	1.5e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32140
fragaria_vesca	FvH4_2g28780 FvH4_2g28780 FvH4_2g28780 FvH4_2g41280 FvH4_2g41280
malus_domestica	MD08G1052500.v1.1 MD08G1157100.v1.1 MD15G1043000.v1.1 MD15G1128200.v1.1
prunus_persica	Prupe.1G396300_v2.0.a1 Prupe.1G396300_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1
pyrus_communis	pycom08g04380 pycom08g12940 pycom15g11540
rosa_chinensis	RchiOBHm_Chr6g0297541 RchiOBHm_Chr6g0299221
rosa_laevigata	RLG00000011452 RLG00000011585
rosa_multiflora	Rmu_ssc0000319.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168900 Rroxscaffold_7G00170380
rosa_rugosa	Rorug06G0273300 Rorug06G0273400 Rorug06G0286300
rosa_samantha	Rh6AG384400 Rh6AG397500 Rh6BG392500 Rh6BG406100 Rh6CG398400 Rh6CG412200 Rh6DG384900 Rh6DG398900
rosa_wichuraiana	Rw6G033480 Rw6G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1231
AatII	GACGTC	3 cut(s)	656, 665, 919
Acc36I	ACCTGC	1 cut(s)	1231
AccB1I	GGYRCC	2 cut(s)	427, 611
AccBSI	CCGCTC	1 cut(s)	690
AccII	CGCG	3 cut(s)	12, 512, 686
AccIII	TCCGGA	1 cut(s)	155
AclWI	GGATC	8 cut(s)	305, 412, 771, 865, 935, 1286, 1382, 1395
AcoI	YGGCCR	3 cut(s)	276, 410, 786
AcsI	RAATTY	2 cut(s)	20, 1378
AcuI	CTGAAG	1 cut(s)	1013
AcyI	GRCGYC	7 cut(s)	428, 546, 636, 653, 662, 795, 916
AfaI	GTAC	2 cut(s)	1041, 1403
AfiI	CCNNNNNNNGG	1 cut(s)	627
AgsI	TTSAA	3 cut(s)	827, 1021, 1268
AhdI	GACNNNNNGTC	1 cut(s)	988
AjiI	CACGTC	1 cut(s)	645
AjnI	CCWGG	3 cut(s)	281, 467, 1084
AluBI	AGCT	6 cut(s)	106, 253, 445, 884, 1199, 1232
AluI	AGCT	6 cut(s)	106, 253, 445, 884, 1199, 1232
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	4 cut(s)	501, 644, 669, 907
AlwI	GGATC	8 cut(s)	305, 412, 771, 865, 935, 1286, 1382, 1395
AlwNI	CAGNNNCTG	1 cut(s)	1223
Ama87I	CYCGRG	2 cut(s)	67, 852
Aor13HI	TCCGGA	1 cut(s)	155
AoxI	GGCC	5 cut(s)	276, 410, 521, 786, 1169
ApeKI	GCWGC	5 cut(s)	106, 212, 250, 693, 884
ApoI	RAATTY	2 cut(s)	20, 1378
AseI	ATTAAT	1 cut(s)	959
AspLEI	GCGC	6 cut(s)	217, 323, 430, 686, 704, 774
AspS9I	GGNCC	7 cut(s)	153, 438, 521, 892, 1069, 1241, 1490
AsuC2I	CCSGG	3 cut(s)	628, 853, 854
AsuHPI	GGTGA	2 cut(s)	142, 241
AsuII	TTCGAA	1 cut(s)	24
AsuNHI	GCTAGC	1 cut(s)	563
AvaI	CYCGRG	2 cut(s)	67, 852
AvaII	GGWCC	6 cut(s)	153, 438, 892, 1069, 1241, 1490
BaeGI	GKGCMC	1 cut(s)	296
BamHI	GGATCC	1 cut(s)	1387
BanI	GGYRCC	2 cut(s)	427, 611
BanII	GRGCYC	1 cut(s)	447
BauI	CACGAG	2 cut(s)	879, 1368
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	447
BbvCI	CCTCAGC	2 cut(s)	622, 1455
BbvI	GCAGC	5 cut(s)	93, 224, 262, 705, 871
BccI	CCATC	2 cut(s)	429, 1108
BceAI	ACGGC	2 cut(s)	508, 623
BciT130I	CCWGG	3 cut(s)	283, 469, 1086
BcnI	CCSGG	3 cut(s)	628, 853, 854
BcoDI	GTCTC	4 cut(s)	501, 644, 669, 907
BfaI	CTAG	2 cut(s)	564, 1467
BfmI	CTRYAG	2 cut(s)	287, 1433
BfoI	RGCGCY	2 cut(s)	431, 705
BfuAI	ACCTGC	1 cut(s)	1231
BglI	GCCNNNNNGGC	2 cut(s)	300, 409
BmcAI	AGTACT	1 cut(s)	1403
Bme1390I	CCNGG	6 cut(s)	283, 469, 628, 853, 854, 1086
Bme18I	GGWCC	6 cut(s)	153, 438, 892, 1069, 1241, 1490
BmeRI	GACNNNNNGTC	1 cut(s)	988
BmeT110I	CYCGRG	2 cut(s)	67, 852
BmgBI	CACGTC	1 cut(s)	645
BmgT120I	GGNCC	7 cut(s)	153, 438, 521, 892, 1069, 1241, 1490
BmiI	GGNNCC	9 cut(s)	429, 522, 613, 1071, 1204, 1242, 1250, 1389, 1491
BmrFI	CCNGG	6 cut(s)	283, 469, 628, 853, 854, 1086
BmsI	GCATC	5 cut(s)	62, 123, 1049, 1167, 1416
BmtI	GCTAGC	1 cut(s)	567
BpiI	GAAGAC	1 cut(s)	273
BpmI	CTGGAG	3 cut(s)	451, 535, 664
Bpu10I	CCTNAGC	3 cut(s)	622, 698, 1455
Bpu14I	TTCGAA	1 cut(s)	24
BpuMI	CCSGG	3 cut(s)	628, 853, 854
BsaHI	GRCGYC	7 cut(s)	428, 546, 636, 653, 662, 795, 916
BsaJI	CCNNGG	7 cut(s)	407, 431, 510, 852, 853, 1053, 1244
BsaWI	WCCGGW	2 cut(s)	155, 671
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 190, 220, 887, 917
Bsc4I	CCNNNNNNNGG	1 cut(s)	627
Bse118I	RCCGGY	2 cut(s)	226, 754
Bse1I	ACTGG	1 cut(s)	1482
BseAI	TCCGGA	1 cut(s)	155
BseBI	CCWGG	3 cut(s)	283, 469, 1086
BseDI	CCNNGG	7 cut(s)	407, 431, 510, 852, 853, 1053, 1244
BseGI	GGATG	7 cut(s)	421, 477, 820, 1006, 1064, 1119, 1431
BseLI	CCNNNNNNNGG	1 cut(s)	627
BseMII	CTCAG	2 cut(s)	636, 1469
BseNI	ACTGG	1 cut(s)	1482
BseRI	GAGGAG	2 cut(s)	51, 448
BseSI	GKGCMC	1 cut(s)	296
BseX3I	CGGCCG	1 cut(s)	410
BseXI	GCAGC	5 cut(s)	93, 224, 262, 705, 871
BseYI	CCCAGC	1 cut(s)	1413
Bsh1236I	CGCG	3 cut(s)	12, 512, 686
Bsh1285I	CGRYCG	1 cut(s)	413
BshFI	GGCC	5 cut(s)	278, 412, 523, 788, 1171
BshNI	GGYRCC	2 cut(s)	427, 611
BsiEI	CGRYCG	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	447
BsiHKCI	CYCGRG	2 cut(s)	67, 852
BslFI	GGGAC	4 cut(s)	1055, 1254, 1360, 1503
BslI	CCNNNNNNNGG	1 cut(s)	627
BsmAI	GTCTC	4 cut(s)	501, 644, 669, 907
BsmBI	CGTCTC	2 cut(s)	644, 907
BsmFI	GGGAC	4 cut(s)	1055, 1254, 1360, 1503
BsnI	GGCC	5 cut(s)	278, 412, 523, 788, 1171
BsoBI	CYCGRG	2 cut(s)	67, 852
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	2 cut(s)	296, 447
Bsp13I	TCCGGA	1 cut(s)	155
Bsp143I	GATC	8 cut(s)	310, 417, 763, 857, 875, 927, 1291, 1387
Bsp19I	CCATGG	1 cut(s)	1053
BspANI	GGCC	5 cut(s)	278, 412, 523, 788, 1171
BspCNI	CTCAG	2 cut(s)	635, 1468
BspEI	TCCGGA	1 cut(s)	155
BspFNI	CGCG	3 cut(s)	12, 512, 686
BspLI	GGNNCC	9 cut(s)	429, 522, 613, 1071, 1204, 1242, 1250, 1389, 1491
BspMI	ACCTGC	1 cut(s)	1231
BspOI	GCTAGC	1 cut(s)	567
BspPI	GGATC	8 cut(s)	305, 412, 771, 865, 935, 1286, 1382, 1395
BspT104I	TTCGAA	1 cut(s)	24
BspT107I	GGYRCC	2 cut(s)	427, 611
BsrBI	CCGCTC	1 cut(s)	690
BsrFI	RCCGGY	2 cut(s)	226, 754
BsrI	ACTGG	1 cut(s)	1482
BssAI	RCCGGY	2 cut(s)	226, 754
BssECI	CCNNGG	7 cut(s)	407, 431, 510, 852, 853, 1053, 1244
BssMI	GATC	8 cut(s)	310, 417, 763, 857, 875, 927, 1291, 1387
BssNI	GRCGYC	7 cut(s)	428, 546, 636, 653, 662, 795, 916
BssSI	CACGAG	2 cut(s)	879, 1368
BssT1I	CCWWGG	1 cut(s)	1053
Bst2BI	CACGAG	2 cut(s)	879, 1368
Bst2UI	CCWGG	3 cut(s)	283, 469, 1086
Bst4CI	ACNGT	1 cut(s)	291
Bst6I	CTCTTC	2 cut(s)	530, 571
BstACI	GRCGYC	7 cut(s)	428, 546, 636, 653, 662, 795, 916
BstAPI	GCANNNNNTGC	2 cut(s)	1102, 1279
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	3 cut(s)	565, 688, 1472
BstDEI	CTNAG	4 cut(s)	622, 698, 870, 1455
BstDSI	CCRYGG	2 cut(s)	510, 1053
BstF5I	GGATG	7 cut(s)	421, 477, 820, 1006, 1064, 1119, 1431
BstFNI	CGCG	3 cut(s)	12, 512, 686
BstH2I	RGCGCY	2 cut(s)	431, 705
BstHHI	GCGC	6 cut(s)	217, 323, 430, 686, 704, 774
BstKTI	GATC	8 cut(s)	313, 420, 766, 860, 878, 930, 1294, 1390
BstMAI	GTCTC	4 cut(s)	501, 644, 669, 907
BstMBI	GATC	8 cut(s)	310, 417, 763, 857, 875, 927, 1291, 1387
BstMCI	CGRYCG	1 cut(s)	413
BstNI	CCWGG	3 cut(s)	283, 469, 1086
BstSCI	CCNGG	6 cut(s)	281, 467, 626, 851, 852, 1084
BstSFI	CTRYAG	2 cut(s)	287, 1433
BstSLI	GKGCMC	1 cut(s)	296
BstUI	CGCG	3 cut(s)	12, 512, 686
BstV1I	GCAGC	5 cut(s)	93, 224, 262, 705, 871
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	1387
BstYI	RGATCY	1 cut(s)	1387
BstZI	CGGCCG	1 cut(s)	410
BsuRI	GGCC	5 cut(s)	278, 412, 523, 788, 1171
BtgI	CCRYGG	2 cut(s)	510, 1053
BtrI	CACGTC	1 cut(s)	645
BtsCI	GGATG	7 cut(s)	421, 477, 820, 1006, 1064, 1119, 1431
BtsIMutI	CAGTG	1 cut(s)	296
BveI	ACCTGC	1 cut(s)	1231
Cac8I	GCNNGC	3 cut(s)	565, 688, 1472
CaiI	CAGNNNCTG	1 cut(s)	1223
CfoI	GCGC	6 cut(s)	217, 323, 430, 686, 704, 774
Cfr10I	RCCGGY	2 cut(s)	226, 754
Cfr13I	GGNCC	7 cut(s)	153, 438, 521, 892, 1069, 1241, 1490
Cfr42I	CCGCGG	1 cut(s)	513
Cfr9I	CCCGGG	1 cut(s)	852
CseI	GACGC	5 cut(s)	188, 554, 644, 803, 978
Csp6I	GTAC	2 cut(s)	1040, 1402
CviAII	CATG	7 cut(s)	82, 100, 1054, 1066, 1132, 1138, 1450
CviQI	GTAC	2 cut(s)	1040, 1402
DdeI	CTNAG	4 cut(s)	622, 698, 870, 1455
DinI	GGCGCC	1 cut(s)	429
DpnI	GATC	8 cut(s)	312, 419, 765, 859, 877, 929, 1293, 1389
DpnII	GATC	8 cut(s)	310, 417, 763, 857, 875, 927, 1291, 1387
DriI	GACNNNNNGTC	1 cut(s)	988
EaeI	YGGCCR	3 cut(s)	276, 410, 786
EagI	CGGCCG	1 cut(s)	410
Eam1104I	CTCTTC	2 cut(s)	530, 571
Eam1105I	GACNNNNNGTC	1 cut(s)	988
EarI	CTCTTC	2 cut(s)	530, 571
EciI	GGCGGA	4 cut(s)	384, 588, 729, 735
Ecl136II	GAGCTC	1 cut(s)	445
EclXI	CGGCCG	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	1053
Eco24I	GRGCYC	1 cut(s)	447
Eco47I	GGWCC	6 cut(s)	153, 438, 892, 1069, 1241, 1490
Eco52I	CGGCCG	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	445
Eco57I	CTGAAG	1 cut(s)	1013
Eco88I	CYCGRG	2 cut(s)	67, 852
EcoICRI	GAGCTC	1 cut(s)	445
EcoO109I	RGGNCCY	1 cut(s)	1490
EcoRI	GAATTC	1 cut(s)	20
EcoRII	CCWGG	3 cut(s)	281, 467, 1084
EcoT14I	CCWWGG	1 cut(s)	1053
EcoT38I	GRGCYC	1 cut(s)	447
EgeI	GGCGCC	1 cut(s)	429
EheI	GGCGCC	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	1053
Esp3I	CGTCTC	2 cut(s)	644, 907
FaeI	CATG	7 cut(s)	85, 103, 1057, 1069, 1135, 1141, 1453
FaqI	GGGAC	4 cut(s)	1055, 1254, 1360, 1503
FatI	CATG	7 cut(s)	81, 99, 1053, 1065, 1131, 1137, 1449
FauI	CCCGC	1 cut(s)	255
FauNDI	CATATG	2 cut(s)	1236, 1329
FokI	GGATG	7 cut(s)	408, 484, 827, 1013, 1071, 1126, 1438
FriOI	GRGCYC	1 cut(s)	447
FspBI	CTAG	2 cut(s)	564, 1467
GlaI	GCGC	6 cut(s)	216, 322, 429, 685, 703, 773
GsaI	CCCAGC	1 cut(s)	1417
GsuI	CTGGAG	3 cut(s)	451, 535, 664
HaeII	RGCGCY	2 cut(s)	431, 705
HaeIII	GGCC	5 cut(s)	278, 412, 523, 788, 1171
HgaI	GACGC	5 cut(s)	188, 554, 644, 803, 978
HhaI	GCGC	6 cut(s)	217, 323, 430, 686, 704, 774
Hin1I	GRCGYC	7 cut(s)	428, 546, 636, 653, 662, 795, 916
Hin1II	CATG	7 cut(s)	85, 103, 1057, 1069, 1135, 1141, 1453
Hin6I	GCGC	6 cut(s)	215, 321, 428, 684, 702, 772
HinP1I	GCGC	6 cut(s)	215, 321, 428, 684, 702, 772
HphI	GGTGA	2 cut(s)	142, 241
Hpy166II	GTNNAC	2 cut(s)	669, 895
Hpy188I	TCNGA	8 cut(s)	723, 768, 807, 907, 982, 1188, 1324, 1359
Hpy8I	GTNNAC	2 cut(s)	669, 895
Hpy99I	CGWCG	9 cut(s)	308, 311, 529, 548, 658, 667, 794, 797, 921
HpyAV	CCTTC	1 cut(s)	389
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4IV	ACGT	4 cut(s)	644, 653, 662, 916
HpyCH4V	TGCA	8 cut(s)	136, 262, 952, 972, 1036, 1226, 1273, 1429
HpyF3I	CTNAG	4 cut(s)	622, 698, 870, 1455
HpySE526I	ACGT	4 cut(s)	644, 653, 662, 916
Hsp92I	GRCGYC	7 cut(s)	428, 546, 636, 653, 662, 795, 916
Hsp92II	CATG	7 cut(s)	85, 103, 1057, 1069, 1135, 1141, 1453
HspAI	GCGC	6 cut(s)	215, 321, 428, 684, 702, 772
KasI	GGCGCC	1 cut(s)	427
Kpn2I	TCCGGA	1 cut(s)	155
KspI	CCGCGG	1 cut(s)	513
Kzo9I	GATC	8 cut(s)	310, 417, 763, 857, 875, 927, 1291, 1387
LmnI	GCTCC	2 cut(s)	103, 450
Lsp1109I	GCAGC	5 cut(s)	93, 224, 262, 705, 871
LweI	GCATC	5 cut(s)	62, 123, 1049, 1167, 1416
MaeI	CTAG	2 cut(s)	564, 1467
MaeII	ACGT	4 cut(s)	644, 653, 662, 916
MaeIII	GTNAC	2 cut(s)	640, 1372
MalI	GATC	8 cut(s)	312, 419, 765, 859, 877, 929, 1293, 1389
MbiI	CCGCTC	1 cut(s)	690
MboI	GATC	8 cut(s)	310, 417, 763, 857, 875, 927, 1291, 1387
MboII	GAAGA	6 cut(s)	48, 101, 278, 547, 588, 949
MfeI	CAATTG	1 cut(s)	1268
MflI	RGATCY	1 cut(s)	1387
MhlI	GDGCHC	2 cut(s)	296, 447
MluCI	AATT	5 cut(s)	4, 20, 956, 1268, 1378
Mly113I	GGCGCC	1 cut(s)	428
MlyI	GAGTC	4 cut(s)	671, 1174, 1311, 1516
MmeI	TCCRAC	3 cut(s)	384, 960, 1238
MroI	TCCGGA	1 cut(s)	155
MseI	TTAA	2 cut(s)	959, 1334
MslI	CAYNNNNRTG	2 cut(s)	1136, 1142
MspA1I	CMGCKG	2 cut(s)	253, 512
MspR9I	CCNGG	6 cut(s)	283, 469, 628, 853, 854, 1086
MunI	CAATTG	1 cut(s)	1268
MvaI	CCWGG	3 cut(s)	283, 469, 1086
MvnI	CGCG	3 cut(s)	12, 512, 686
NarI	GGCGCC	1 cut(s)	428
NciI	CCSGG	3 cut(s)	628, 853, 854
NcoI	CCATGG	1 cut(s)	1053
NdeI	CATATG	2 cut(s)	1236, 1329
NdeII	GATC	8 cut(s)	310, 417, 763, 857, 875, 927, 1291, 1387
NheI	GCTAGC	1 cut(s)	563
NlaIII	CATG	7 cut(s)	85, 103, 1057, 1069, 1135, 1141, 1453
NlaIV	GGNNCC	9 cut(s)	429, 522, 613, 1071, 1204, 1242, 1250, 1389, 1491
NmeAIII	GCCGAG	6 cut(s)	279, 388, 456, 730, 823, 1500
NmuCI	GTSAC	1 cut(s)	640
NspV	TTCGAA	1 cut(s)	24
PaeR7I	CTCGAG	1 cut(s)	67
PaqCI	CACCTGC	1 cut(s)	1231
PcsI	WCGNNNNNNNCGW	5 cut(s)	306, 650, 659, 662, 986
PfeI	GAWTC	6 cut(s)	232, 341, 506, 718, 827, 1441
PflFI	GACNNNGTC	1 cut(s)	664
PfoI	TCCNGGA	1 cut(s)	467
PleI	GAGTC	4 cut(s)	671, 1173, 1310, 1515
PluTI	GGCGCC	1 cut(s)	431
PpsI	GAGTC	4 cut(s)	671, 1173, 1310, 1515
PpuMI	RGGWCCY	1 cut(s)	1490
PshBI	ATTAAT	1 cut(s)	959
Psp124BI	GAGCTC	1 cut(s)	447
Psp5II	RGGWCCY	1 cut(s)	1490
Psp6I	CCWGG	3 cut(s)	281, 467, 1084
PspFI	CCCAGC	1 cut(s)	1413
PspGI	CCWGG	3 cut(s)	281, 467, 1084
PspN4I	GGNNCC	9 cut(s)	429, 522, 613, 1071, 1204, 1242, 1250, 1389, 1491
PspPI	GGNCC	7 cut(s)	153, 438, 521, 892, 1069, 1241, 1490
PspPPI	RGGWCCY	1 cut(s)	1490
PstNI	CAGNNNCTG	1 cut(s)	1223
PsuI	RGATCY	1 cut(s)	1387
PsyI	GACNNNGTC	1 cut(s)	664
PvuII	CAGCTG	1 cut(s)	253
RsaI	GTAC	2 cut(s)	1041, 1403
RsaNI	GTAC	2 cut(s)	1040, 1402
RseI	CAYNNNNRTG	2 cut(s)	1136, 1142
SacI	GAGCTC	1 cut(s)	447
SacII	CCGCGG	1 cut(s)	513
SaqAI	TTAA	2 cut(s)	959, 1334
Sau3AI	GATC	8 cut(s)	310, 417, 763, 857, 875, 927, 1291, 1387
Sau96I	GGNCC	7 cut(s)	153, 438, 521, 892, 1069, 1241, 1490
ScaI	AGTACT	1 cut(s)	1403
SchI	GAGTC	4 cut(s)	671, 1174, 1311, 1516
ScrFI	CCNGG	6 cut(s)	283, 469, 628, 853, 854, 1086
SduI	GDGCHC	2 cut(s)	296, 447
SfaNI	GCATC	5 cut(s)	62, 123, 1049, 1167, 1416
SfcI	CTRYAG	2 cut(s)	287, 1433
SfoI	GGCGCC	1 cut(s)	429
Sfr274I	CTCGAG	1 cut(s)	67
Sfr303I	CCGCGG	1 cut(s)	513
SfuI	TTCGAA	1 cut(s)	24
SgrAI	CRCCGGYG	2 cut(s)	226, 754
SgrBI	CCGCGG	1 cut(s)	513
SinI	GGWCC	6 cut(s)	153, 438, 892, 1069, 1241, 1490
SlaI	CTCGAG	1 cut(s)	67
SmaI	CCCGGG	1 cut(s)	854
SmiMI	CAYNNNNRTG	2 cut(s)	1136, 1142
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse9I	AATT	5 cut(s)	4, 20, 956, 1268, 1378
SspDI	GGCGCC	1 cut(s)	427
SspMI	CTAG	2 cut(s)	564, 1467
SstI	GAGCTC	1 cut(s)	447
StyD4I	CCNGG	6 cut(s)	281, 467, 626, 851, 852, 1084
StyI	CCWWGG	1 cut(s)	1053
TaaI	ACNGT	1 cut(s)	291
TaiI	ACGT	4 cut(s)	647, 656, 665, 919
TaqI	TCGA	7 cut(s)	24, 68, 533, 543, 716, 860, 919
TaqII	GACCGA	2 cut(s)	455, 1258
TasI	AATT	5 cut(s)	4, 20, 956, 1268, 1378
TatI	WGTACW	2 cut(s)	1039, 1401
TfiI	GAWTC	6 cut(s)	232, 341, 506, 718, 827, 1441
Tru1I	TTAA	2 cut(s)	959, 1334
Tru9I	TTAA	2 cut(s)	959, 1334
TscAI	CASTG	1 cut(s)	296
TseFI	GTSAC	1 cut(s)	640
TseI	GCWGC	5 cut(s)	106, 212, 250, 693, 884
Tsp45I	GTSAC	1 cut(s)	640
TspDTI	ATGAA	3 cut(s)	17, 519, 1017
TspGWI	ACGGA	1 cut(s)	135
TspMI	CCCGGG	1 cut(s)	852
TspRI	CASTG	1 cut(s)	296
Tth111I	GACNNNGTC	1 cut(s)	664
VpaK11BI	GGWCC	6 cut(s)	153, 438, 892, 1069, 1241, 1490
VspI	ATTAAT	1 cut(s)	959
XapI	RAATTY	2 cut(s)	20, 1378
XhoI	CTCGAG	1 cut(s)	67
XmaI	CCCGGG	1 cut(s)	852
XspI	CTAG	2 cut(s)	564, 1467
ZraI	GACGTC	3 cut(s)	654, 663, 917
ZrmI	AGTACT	1 cut(s)	1403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.