Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002838

Physical Location & Seq

Genomic Coordinates Reverse (-)

35143328 .. 35147374

Gene Structure 4047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G396300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGGTTGGAAGTACAACGCGGGTTTGGGGTTGATTGGCACGGTTGTCTTCATATGGGTCGCTTCTGCAGAGGTTACTCAGAGAATTTTCACCGAGTACAAACAGCCGTTTGCATTGACTTATCTCGGGGTGTCTCTAATGGTGGTCTATCTACCTATAGCAGCTTTGAAACATTGGATCTGCAGCTTACTGAAACCAAATTTAGTTGATAATTTCTACAACAATGAGAGTGCCATGAGCACTTCAGTTGGGCTTGATATCCCACTTATAATAAATGAAATGCACCAGAGTCCAGAAACCGATGTTACAAGCTGCCCAGTTACTGACAAAGATTTTAGCAATACGGAAGAAGGGCGGCCTCTAATCGCTAAGAGTGAAGAAGATGAGTCTCACTTGCTTGAACGAAGTGATCAGCTTAGTCCCTGGGAAATTGCAAAATGTGGCTTAATTCTTACTCCAATATGGTTTCTTACAGAGTATCTGTCAAACTCTGCGCTGGCAAATACCAGTGTTGCTAGCACAACTGTCCTAACTTCTACATCGGGGCTCTTTACACTTTTCTTTGGAGCTCTTCTTCGTCAGGATTCCATAAGTATTCCAAAGATAGTTGCTGTCTTTGTCAGCATGGCTGGTGTTGCCATGACCACAGCTGGAAATACTTGGGCACCTGATGAACTGCTGAGCATCTCTGAGACTAGAAAGCACTCTATAACAGGAGACATTTGTGGTCTTCTCTCAGCAGCATCTTATGGATTATTTACAGTGTTACTTAAGAAATTTGCTGGATCAGAAGAGGAAGGAGATAAGGTTGACGTGCAGAAGCTCTTTGGATACGTTGGTCTCTTTACTCTGCTTGGTCTGTGGTGGCTTGTGTGGCCGCTCAATGCCATCGGGATTAAACCTTCTTTTGAGCTTCCACAATCGAAATCTGTTGGGGAAGTTGTGCTGTTAAATGGCTTCATGGGGAGTGTTCTTTCAGATTATTTTTGGGCACTTTCTGTGGTTTGGACTTCTCCATTGGTTGCAACGTTGGGCATGTCCTTGACAATTCCCCTTGCTATGGTAGCTGACATGGTAATTCACGGCCGCCATTTTTCTGCAGTCTACATCTTTGGTTGCATTCAGGTTTTTGCAGGTTTTGTGATGGCAAACCTTTCAGACAAGTTTTCTAGAAAGGAAGAGTTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

397

Amino Acids

43.39

Weight (kDa)

4.99

Isoelectric Point (pI)

30.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32140
fragaria_vesca	FvH4_2g28780 FvH4_2g28780 FvH4_2g28780 FvH4_2g41280 FvH4_2g41280
malus_domestica	MD08G1052500.v1.1 MD08G1157100.v1.1 MD15G1043000.v1.1 MD15G1128200.v1.1
prunus_persica	Prupe.1G396300_v2.0.a1 Prupe.1G396300_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1 Prupe.1G483500_v2.0.a1
pyrus_communis	pycom08g04380 pycom08g12940 pycom15g11540
rosa_chinensis	RchiOBHm_Chr6g0297541 RchiOBHm_Chr6g0299221
rosa_laevigata	RLG00000011452 RLG00000011585
rosa_multiflora	Rmu_ssc0000319.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168900 Rroxscaffold_7G00170380
rosa_rugosa	Rorug06G0273300 Rorug06G0273400 Rorug06G0286300
rosa_samantha	Rh6AG384400 Rh6AG397500 Rh6BG392500 Rh6BG406100 Rh6CG398400 Rh6CG412200 Rh6DG384900 Rh6DG398900
rosa_wichuraiana	Rw6G033480 Rw6G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	269
Acc36I	ACCTGC	1 cut(s)	1124
AccB1I	GGYRCC	1 cut(s)	664
AccBSI	CCGCTC	1 cut(s)	880
AccI	GTMKAC	1 cut(s)	1104
AccII	CGCG	1 cut(s)	20
AciI	CCGC	4 cut(s)	20, 355, 878, 1087
AclI	AACGTT	1 cut(s)	1028
AclWI	GGATC	2 cut(s)	185, 793
AcoI	YGGCCR	2 cut(s)	875, 1084
AcsI	RAATTY	3 cut(s)	84, 199, 776
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	2 cut(s)	14, 98
AfiI	CCNNNNNNNGG	1 cut(s)	1060
AflII	CTTAAG	1 cut(s)	770
AgsI	TTSAA	3 cut(s)	169, 401, 1186
AjiI	CACGTC	1 cut(s)	814
AjnI	CCWGG	1 cut(s)	422
AluBI	AGCT	9 cut(s)	164, 186, 312, 415, 569, 650, 823, 913, 1067
AluI	AGCT	9 cut(s)	164, 186, 312, 415, 569, 650, 823, 913, 1067
Alw21I	GWGCWC	2 cut(s)	242, 571
Alw26I	GTCTC	5 cut(s)	138, 393, 686, 711, 845
AlwI	GGATC	2 cut(s)	185, 793
AlwNI	CAGNNNCTG	1 cut(s)	323
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	3 cut(s)	356, 875, 1084
ApeKI	GCWGC	4 cut(s)	161, 183, 312, 740
ApoI	RAATTY	3 cut(s)	84, 199, 776
AspLEI	GCGC	1 cut(s)	496
AsuHPI	GGTGA	1 cut(s)	82
AsuNHI	GCTAGC	1 cut(s)	515
AvaI	CYCGRG	1 cut(s)	125
BaeGI	GKGCMC	2 cut(s)	667, 994
BaeI	ACNNNNGTAYC	2 cut(s)	823, 856
BanI	GGYRCC	1 cut(s)	664
BanII	GRGCYC	2 cut(s)	549, 571
BbsI	GAAGAC	2 cut(s)	40, 722
Bbv12I	GWGCWC	2 cut(s)	242, 571
BbvI	GCAGC	4 cut(s)	173, 195, 299, 752
BccI	CCATC	2 cut(s)	896, 1138
BceAI	ACGGC	2 cut(s)	91, 1099
BciT130I	CCWGG	1 cut(s)	424
BciVI	GTATCC	1 cut(s)	824
BclI	TGATCA	1 cut(s)	409
BcoDI	GTCTC	5 cut(s)	138, 393, 686, 711, 845
BfaI	CTAG	3 cut(s)	516, 696, 1170
BfmI	CTRYAG	4 cut(s)	66, 156, 181, 1098
BfrI	CTTAAG	1 cut(s)	770
BfuAI	ACCTGC	1 cut(s)	1124
BfuI	GTATCC	1 cut(s)	824
BisI	GCNGC	7 cut(s)	162, 184, 313, 356, 741, 878, 1087
BlpI	GCTNAGC	1 cut(s)	680
BlsI	GCNGC	7 cut(s)	163, 185, 314, 357, 742, 879, 1088
Bme1390I	CCNGG	1 cut(s)	424
BmeT110I	CYCGRG	1 cut(s)	125
BmgBI	CACGTC	1 cut(s)	814
BmiI	GGNNCC	1 cut(s)	666
BmrFI	CCNGG	1 cut(s)	424
BmrI	ACTGGG	1 cut(s)	311
BmsI	GCATC	2 cut(s)	693, 752
BmtI	GCTAGC	1 cut(s)	519
BmuI	ACTGGG	1 cut(s)	311
BpiI	GAAGAC	2 cut(s)	40, 722
Bpu1102I	GCTNAGC	1 cut(s)	680
BsaI	GGTCTC	1 cut(s)	845
BsaJI	CCNNGG	2 cut(s)	422, 423
BsaXI	ACNNNNNCTCC	2 cut(s)	792, 822
Bsc4I	CCNNNNNNNGG	1 cut(s)	1060
Bse1I	ACTGG	2 cut(s)	317, 507
BseBI	CCWGG	1 cut(s)	424
BseDI	CCNNGG	2 cut(s)	422, 423
BseLI	CCNNNNNNNGG	1 cut(s)	1060
BseMII	CTCAG	4 cut(s)	92, 671, 681, 750
BseNI	ACTGG	2 cut(s)	317, 507
BseSI	GKGCMC	2 cut(s)	667, 994
BseX3I	CGGCCG	1 cut(s)	1084
BseXI	GCAGC	4 cut(s)	173, 195, 299, 752
BsgI	GTGCAG	1 cut(s)	836
Bsh1236I	CGCG	1 cut(s)	20
Bsh1285I	CGRYCG	1 cut(s)	1087
BshFI	GGCC	3 cut(s)	358, 877, 1086
BshNI	GGYRCC	1 cut(s)	664
BsiEI	CGRYCG	1 cut(s)	1087
BsiHKAI	GWGCWC	2 cut(s)	242, 571
BsiHKCI	CYCGRG	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	1 cut(s)	1060
BsmAI	GTCTC	5 cut(s)	138, 393, 686, 711, 845
BsmFI	GGGAC	1 cut(s)	405
BsmI	GAATGC	1 cut(s)	1119
BsnI	GGCC	3 cut(s)	358, 877, 1086
Bso31I	GGTCTC	1 cut(s)	845
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	5 cut(s)	242, 549, 571, 667, 994
Bsp143I	GATC	3 cut(s)	177, 409, 785
Bsp1720I	GCTNAGC	1 cut(s)	680
BspACI	CCGC	4 cut(s)	20, 355, 878, 1087
BspANI	GGCC	3 cut(s)	358, 877, 1086
BspCNI	CTCAG	4 cut(s)	91, 672, 682, 749
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	666
BspMAI	CTGCAG	3 cut(s)	70, 185, 1102
BspMI	ACCTGC	1 cut(s)	1124
BspOI	GCTAGC	1 cut(s)	519
BspPI	GGATC	2 cut(s)	185, 793
BspQI	GCTCTTC	1 cut(s)	576
BspT107I	GGYRCC	1 cut(s)	664
BspTI	CTTAAG	1 cut(s)	770
BspTNI	GGTCTC	1 cut(s)	845
BsrBI	CCGCTC	1 cut(s)	880
BsrI	ACTGG	2 cut(s)	317, 507
BssECI	CCNNGG	2 cut(s)	422, 423
BssMI	GATC	3 cut(s)	177, 409, 785
Bst2UI	CCWGG	1 cut(s)	424
Bst4CI	ACNGT	3 cut(s)	43, 526, 763
Bst6I	CTCTTC	3 cut(s)	576, 786, 1173
BstAFI	CTTAAG	1 cut(s)	770
BstC8I	GCNNGC	2 cut(s)	498, 517
BstDEI	CTNAG	6 cut(s)	78, 369, 416, 680, 690, 736
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	3 cut(s)	180, 412, 788
BstMAI	GTCTC	5 cut(s)	138, 393, 686, 711, 845
BstMBI	GATC	3 cut(s)	177, 409, 785
BstMCI	CGRYCG	1 cut(s)	1087
BstMWI	GCNNNNNNNGC	3 cut(s)	635, 874, 1064
BstNI	CCWGG	1 cut(s)	424
BstNSI	RCATGY	1 cut(s)	1039
BstSCI	CCNGG	1 cut(s)	422
BstSFI	CTRYAG	4 cut(s)	66, 156, 181, 1098
BstSLI	GKGCMC	2 cut(s)	667, 994
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	4 cut(s)	173, 195, 299, 752
BstV2I	GAAGAC	2 cut(s)	40, 722
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BstZI	CGGCCG	1 cut(s)	1084
BsuI	GTATCC	1 cut(s)	824
BsuRI	GGCC	3 cut(s)	358, 877, 1086
BtrI	CACGTC	1 cut(s)	814
BtsIMutI	CAGTG	2 cut(s)	514, 768
BveI	ACCTGC	1 cut(s)	1124
Cac8I	GCNNGC	2 cut(s)	498, 517
CaiI	CAGNNNCTG	1 cut(s)	323
CfoI	GCGC	1 cut(s)	496
Csp6I	GTAC	2 cut(s)	13, 97
CviAII	CATG	6 cut(s)	235, 625, 640, 961, 1036, 1072
CviQI	GTAC	2 cut(s)	13, 97
DdeI	CTNAG	6 cut(s)	78, 369, 416, 680, 690, 736
DpnI	GATC	3 cut(s)	179, 411, 787
DpnII	GATC	3 cut(s)	177, 409, 785
EaeI	YGGCCR	2 cut(s)	875, 1084
EagI	CGGCCG	1 cut(s)	1084
Eam1104I	CTCTTC	3 cut(s)	576, 786, 1173
EarI	CTCTTC	3 cut(s)	576, 786, 1173
Ecl136II	GAGCTC	1 cut(s)	569
EclXI	CGGCCG	1 cut(s)	1084
Eco24I	GRGCYC	2 cut(s)	549, 571
Eco31I	GGTCTC	1 cut(s)	845
Eco32I	GATATC	1 cut(s)	259
Eco52I	CGGCCG	1 cut(s)	1084
Eco53kI	GAGCTC	1 cut(s)	569
Eco57I	CTGAAG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	125
EcoICRI	GAGCTC	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	422
EcoRV	GATATC	1 cut(s)	259
EcoT38I	GRGCYC	2 cut(s)	549, 571
FaeI	CATG	6 cut(s)	238, 628, 643, 964, 1039, 1075
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	6 cut(s)	234, 624, 639, 960, 1035, 1071
FauI	CCCGC	1 cut(s)	13
FauNDI	CATATG	1 cut(s)	53
FbaI	TGATCA	1 cut(s)	409
FblI	GTMKAC	1 cut(s)	1104
Fnu4HI	GCNGC	7 cut(s)	162, 184, 313, 356, 741, 878, 1087
FriOI	GRGCYC	2 cut(s)	549, 571
Fsp4HI	GCNGC	7 cut(s)	162, 184, 313, 356, 741, 878, 1087
FspBI	CTAG	3 cut(s)	516, 696, 1170
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	7 cut(s)	162, 184, 313, 356, 741, 878, 1087
HaeIII	GGCC	3 cut(s)	358, 877, 1086
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	6 cut(s)	238, 628, 643, 964, 1039, 1075
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HinfI	GANTC	3 cut(s)	289, 386, 584
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	811, 1105
Hpy188I	TCNGA	5 cut(s)	81, 691, 790, 979, 1159
Hpy188III	TCNNGA	4 cut(s)	293, 581, 892, 1170
Hpy8I	GTNNAC	2 cut(s)	811, 1105
HpyAV	CCTTC	3 cut(s)	344, 791, 912
HpyCH4III	ACNGT	3 cut(s)	43, 526, 763
HpyCH4IV	ACGT	3 cut(s)	813, 834, 1028
HpyF10VI	GCNNNNNNNGC	3 cut(s)	635, 874, 1064
HpyF3I	CTNAG	6 cut(s)	78, 369, 416, 680, 690, 736
HpySE526I	ACGT	3 cut(s)	813, 834, 1028
Hsp92II	CATG	6 cut(s)	238, 628, 643, 964, 1039, 1075
HspAI	GCGC	1 cut(s)	494
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	177, 409, 785
LguI	GCTCTTC	1 cut(s)	576
LmnI	GCTCC	1 cut(s)	566
Lsp1109I	GCAGC	4 cut(s)	173, 195, 299, 752
LweI	GCATC	2 cut(s)	693, 752
MaeI	CTAG	3 cut(s)	516, 696, 1170
MaeII	ACGT	3 cut(s)	813, 834, 1028
MaeIII	GTNAC	4 cut(s)	73, 304, 319, 765
MalI	GATC	3 cut(s)	179, 411, 787
MbiI	CCGCTC	1 cut(s)	880
MboI	GATC	3 cut(s)	177, 409, 785
MboII	GAAGA	9 cut(s)	40, 359, 389, 392, 563, 566, 722, 803, 1190
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	5 cut(s)	242, 549, 571, 667, 994
MluCI	AATT	8 cut(s)	84, 199, 211, 429, 447, 776, 1047, 1077
MlyI	GAGTC	2 cut(s)	298, 395
MnlI	CCTC	3 cut(s)	64, 369, 787
MseI	TTAA	4 cut(s)	446, 771, 897, 950
MspA1I	CMGCKG	1 cut(s)	650
MspCI	CTTAAG	1 cut(s)	770
MspR9I	CCNGG	1 cut(s)	424
Mva1269I	GAATGC	1 cut(s)	1119
MvaI	CCWGG	1 cut(s)	424
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	3 cut(s)	635, 874, 1064
NdeI	CATATG	1 cut(s)	53
NdeII	GATC	3 cut(s)	177, 409, 785
NheI	GCTAGC	1 cut(s)	515
NlaIII	CATG	6 cut(s)	238, 628, 643, 964, 1039, 1075
NlaIV	GGNNCC	1 cut(s)	666
NspI	RCATGY	1 cut(s)	1039
PasI	CCCWGGG	1 cut(s)	423
PciSI	GCTCTTC	1 cut(s)	576
PctI	GAATGC	1 cut(s)	1119
PfeI	GAWTC	1 cut(s)	584
PkrI	GCNGC	7 cut(s)	163, 185, 314, 357, 742, 879, 1088
PleI	GAGTC	2 cut(s)	297, 394
PpsI	GAGTC	2 cut(s)	297, 394
PsiI	TTATAA	1 cut(s)	269
Psp124BI	GAGCTC	1 cut(s)	571
Psp1406I	AACGTT	1 cut(s)	1028
Psp6I	CCWGG	1 cut(s)	422
PspGI	CCWGG	1 cut(s)	422
PspN4I	GGNNCC	1 cut(s)	666
PstI	CTGCAG	3 cut(s)	70, 185, 1102
PstNI	CAGNNNCTG	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	177
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	2 cut(s)	14, 98
RsaNI	GTAC	2 cut(s)	13, 97
SacI	GAGCTC	1 cut(s)	571
SapI	GCTCTTC	1 cut(s)	576
SaqAI	TTAA	4 cut(s)	446, 771, 897, 950
SatI	GCNGC	7 cut(s)	162, 184, 313, 356, 741, 878, 1087
Sau3AI	GATC	3 cut(s)	177, 409, 785
SchI	GAGTC	2 cut(s)	298, 395
ScrFI	CCNGG	1 cut(s)	424
SduI	GDGCHC	5 cut(s)	242, 549, 571, 667, 994
SfaNI	GCATC	2 cut(s)	693, 752
SfcI	CTRYAG	4 cut(s)	66, 156, 181, 1098
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
Sse9I	AATT	8 cut(s)	84, 199, 211, 429, 447, 776, 1047, 1077
SsiI	CCGC	4 cut(s)	20, 355, 878, 1087
SspMI	CTAG	3 cut(s)	516, 696, 1170
SstI	GAGCTC	1 cut(s)	571
StyD4I	CCNGG	1 cut(s)	422
TaaI	ACNGT	3 cut(s)	43, 526, 763
TaiI	ACGT	3 cut(s)	816, 837, 1031
TaqI	TCGA	1 cut(s)	923
TasI	AATT	8 cut(s)	84, 199, 211, 429, 447, 776, 1047, 1077
TatI	WGTACW	2 cut(s)	12, 96
TauI	GCSGC	3 cut(s)	358, 880, 1089
TfiI	GAWTC	1 cut(s)	584
Tru1I	TTAA	4 cut(s)	446, 771, 897, 950
Tru9I	TTAA	4 cut(s)	446, 771, 897, 950
TscAI	CASTG	2 cut(s)	514, 768
TseI	GCWGC	4 cut(s)	161, 183, 312, 740
TspDTI	ATGAA	4 cut(s)	40, 291, 687, 949
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	2 cut(s)	514, 768
Vha464I	CTTAAG	1 cut(s)	770
XapI	RAATTY	3 cut(s)	84, 199, 776
XbaI	TCTAGA	1 cut(s)	1169
XceI	RCATGY	1 cut(s)	1039
XmiI	GTMKAC	1 cut(s)	1104
XspI	CTAG	3 cut(s)	516, 696, 1170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.